Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGACTGTATTGATGGATGCCTTTGTGACAGGATTAGAACCAACCTTACAAGCTGAAGTGGTTAGCAGACACCTTAAAACATTGGAAGCATGTATGCGTGAGGCTCAGTTAGTCAGTGATCAAAATTTAGCCTTGCAATTAGCAAGAGCAGAGAAAGGAATCAGTGAAACCAGAGGAGGACCCATTCAAGGGAATAGGAACCAGGTCGAACCAGAAAGGGGAAATTAGAAGAAAAACGAATTTCCAATGAAACAAGTGACCATTCCTATTAAAGGAAATTTCGCATTGGGAGAACCAACAGTAAAAAGACTCTCTGACACAGAATTCCGAGCACGGCTAGATAAAGGACTTTGTTTCAGATGCAATGAGAAATACTCCCCTACTCATCGATGTAAAGTGAGGGAAAAAAGAGAACTAATGTTGTTTGTTTTCAATGAAGAAGAAGGATCAGAGGGAGAGGAAATAGAGGGGGAAAAGGAAGAAGAGATAGTGGAGTTGAAAATTTTAAAACTTCCTACTGGAACCGAAATGAAACTGAAGACCCTAATGGCATTTGAAGCGAAAGGAACCATGAAGATGAGAGGCACACTCAAAGGAAAAGAAGTCATTGTATTGATTGACAGCAGGGCCACTCATAATTTTTTGCATCAAGCGTTGGTGGATGAGTTGGTTTATTGGTAG
mRNA sequence
ATGGCAGAGACTGTATTGATGGATGCCTTTGTGACAGGATTAGAACCAACCTTACAAGCTGAAGTGGTTAGCAGACACCTTAAAACATTGGAAGCATGTATGCGTGAGGCTCAGTTAGTCAGTGATCAAAATTTAGCCTTGCAATTAGCAAGAGCAGAGAAAGGAATCAATAAAGGACTTTGTTTCAGATGCAATGAGAAATACTCCCCTACTCATCGATGTAAAGTGAGGGAAAAAAGAGAACTAATGTTGTTTGTTTTCAATGAAGAAGAAGGATCAGAGGGAGAGGAAATAGAGGGGGAAAAGGAAGAAGAGATAGTGGAGTTGAAAATTTTAAAACTTCCTACTGGAACCGAAATGAAACTGAAGACCCTAATGGCATTTGAAGCGAAAGGAACCATGAAGATGAGAGGCACACTCAAAGGAAAAGAAGTCATTGTATTGATTGACAGCAGGGCCACTCATAATTTTTTGCATCAAGCGTTGGTGGATGAGTTGGTTTATTGGTAG
Coding sequence (CDS)
ATGGCAGAGACTGTATTGATGGATGCCTTTGTGACAGGATTAGAACCAACCTTACAAGCTGAAGTGGTTAGCAGACACCTTAAAACATTGGAAGCATGTATGCGTGAGGCTCAGTTAGTCAGTGATCAAAATTTAGCCTTGCAATTAGCAAGAGCAGAGAAAGGAATCAATAAAGGACTTTGTTTCAGATGCAATGAGAAATACTCCCCTACTCATCGATGTAAAGTGAGGGAAAAAAGAGAACTAATGTTGTTTGTTTTCAATGAAGAAGAAGGATCAGAGGGAGAGGAAATAGAGGGGGAAAAGGAAGAAGAGATAGTGGAGTTGAAAATTTTAAAACTTCCTACTGGAACCGAAATGAAACTGAAGACCCTAATGGCATTTGAAGCGAAAGGAACCATGAAGATGAGAGGCACACTCAAAGGAAAAGAAGTCATTGTATTGATTGACAGCAGGGCCACTCATAATTTTTTGCATCAAGCGTTGGTGGATGAGTTGGTTTATTGGTAG
Protein sequence
MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKGINKGLCFRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMKLKTLMAFEAKGTMKMRGTLKGKEVIVLIDSRATHNFLHQALVDELVYW
Homology
BLAST of PI0020757 vs. ExPASy TrEMBL
Match:
A0A5A7TG20 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2228G00040 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 6.9e-42
Identity = 108/192 (56.25%), Postives = 131/192 (68.23%), Query Frame = 0
Query: 3 ETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARA---------- 62
E+VL D FVT LE LQAEVVSR +TLE CM+EAQLV+D NL L+LARA
Sbjct: 87 ESVLRDTFVTELELVLQAEVVSRWPQTLEECMKEAQLVNDHNLVLKLARAKLGVPKANGG 146
Query: 63 -----------EKGI-------NKGLCFRCNEKYSPTHRCKVREKRELMLFVFNEEEGS- 122
EKGI ++GL FRCNEKYS H+CKV+EKR+LMLF+ NEEE +
Sbjct: 147 ESSTTKTQGGSEKGIQQFRARLDRGLRFRCNEKYSHGHQCKVKEKRKLMLFILNEEESTV 206
Query: 123 EGEEIEGEKEEEIVELKILKLPTGTEMKLKTLMAFEAKGTMKMRGTLKGKEVIVLIDSRA 166
EG+ EG K+EE VELK L + G E+K K + F +KGTMK++G +KGKEVIVLID A
Sbjct: 207 EGDITEG-KDEEKVELKQLDITEGAEIKFKAITCFTSKGTMKLKGHVKGKEVIVLIDRGA 266
BLAST of PI0020757 vs. ExPASy TrEMBL
Match:
A0A5A7TIU7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G001280 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 102/225 (45.33%), Postives = 136/225 (60.44%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
MAE+VL+DAFVTGLEP+LQAEV+SRH +TLE CM+EAQLV+D+NLAL+L++ E G
Sbjct: 1 MAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMKEAQLVNDRNLALKLSKMELGMTEWE 60
Query: 61 ------------------------------------------------------INKGLC 120
+++GLC
Sbjct: 61 EGGSSKVKKLGDADKPPPRKTDFQMKQITITIKGNFKKGEPPMKRLSDAEFRARLDRGLC 120
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KYSP HRCK +EKRELM F+ NEEE +EG+ E E E VELK L+L ++
Sbjct: 121 FRCNDKYSPGHRCKTKEKRELMFFIMNEEEENEGDSHE-EVTEGTVELKTLELTEDIAIE 180
BLAST of PI0020757 vs. ExPASy TrEMBL
Match:
A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 103/225 (45.78%), Postives = 133/225 (59.11%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
MAE+VL+DAFVTGLEP+LQAEV+SRH +TLE CMREAQLV+D+N AL+L++ E G
Sbjct: 195 MAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNYALKLSKMELGMTEWE 254
Query: 61 ------------------------------------------------------INKGLC 120
+++GLC
Sbjct: 255 VGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLC 314
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KYSP HRCK +EKRELM F+ NEEE E + + E EE VELK L+L T ++
Sbjct: 315 FRCNDKYSPGHRCKTKEKRELMFFIMNEEEEDEEGDSQEEVIEETVELKTLELTDETAIE 374
BLAST of PI0020757 vs. ExPASy TrEMBL
Match:
A0A5A7SZS5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00640 PE=4 SV=1)
HSP 1 Score: 176.8 bits (447), Expect = 7.7e-41
Identity = 100/225 (44.44%), Postives = 133/225 (59.11%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
MAE+VL+D FVTGLEP+LQAEV+SRH +TLE CMREAQLV+D+NLAL+L++ E G
Sbjct: 167 MAESVLVDVFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTEWD 226
Query: 61 ------------------------------------------------------INKGLC 120
+++GLC
Sbjct: 227 EGGSSKVKKLGDADKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLC 286
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KYSP HRCK +EKRELM F+ NEEE +E + E EE VELK L+L ++
Sbjct: 287 FRCNDKYSPGHRCKTKEKRELMFFIMNEEEENEEGNNQEEVTEETVELKTLELTEDIAIE 346
BLAST of PI0020757 vs. ExPASy TrEMBL
Match:
A0A5D3CW02 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00980 PE=4 SV=1)
HSP 1 Score: 176.8 bits (447), Expect = 7.7e-41
Identity = 102/225 (45.33%), Postives = 135/225 (60.00%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARA-------- 60
MAE+VL+DAFVTGLEP+LQAEV+SRH +TLE CM+EAQLV+D+NLAL+L +
Sbjct: 156 MAESVLVDAFVTGLEPSLQAEVISRHPQTLEECMKEAQLVNDRNLALKLTKMELRMTEWD 215
Query: 61 EKGINKG---------------------------------------------------LC 120
E+G +KG LC
Sbjct: 216 ERGSSKGKKTGENEKVMPRKTDFQMKQITIPIKGHFKKGEPPVKRLSDAKFRARLDRELC 275
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KY+P HRCK +EKRELM F+ NEEE +E + E E +ELK L+L TE++
Sbjct: 276 FRCNDKYTPGHRCKTKEKRELMFFIMNEEEETEEVHSKDETTERTMELKNLELTEDTEIE 335
BLAST of PI0020757 vs. NCBI nr
Match:
XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])
HSP 1 Score: 182.6 bits (462), Expect = 2.9e-42
Identity = 103/225 (45.78%), Postives = 134/225 (59.56%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
M E+VL DAF+TGLEP LQAEVVSR+ TLE CMREAQLV+D+NLALQ ++AE G
Sbjct: 194 MTESVLRDAFLTGLEPNLQAEVVSRNPLTLEECMREAQLVNDRNLALQWSKAEGGGRNYK 253
Query: 61 ------------------------------------------------------INKGLC 120
++KGLC
Sbjct: 254 KGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVKRLSDAEFRARLDKGLC 313
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
F+CNE+YSP HRCK+++KRELMLF+ NEEE E E+ E EE++EL L L GTE++
Sbjct: 314 FKCNERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLELNQLTLEEGTEIE 373
BLAST of PI0020757 vs. NCBI nr
Match:
KAA0040209.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 108/192 (56.25%), Postives = 131/192 (68.23%), Query Frame = 0
Query: 3 ETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARA---------- 62
E+VL D FVT LE LQAEVVSR +TLE CM+EAQLV+D NL L+LARA
Sbjct: 87 ESVLRDTFVTELELVLQAEVVSRWPQTLEECMKEAQLVNDHNLVLKLARAKLGVPKANGG 146
Query: 63 -----------EKGI-------NKGLCFRCNEKYSPTHRCKVREKRELMLFVFNEEEGS- 122
EKGI ++GL FRCNEKYS H+CKV+EKR+LMLF+ NEEE +
Sbjct: 147 ESSTTKTQGGSEKGIQQFRARLDRGLRFRCNEKYSHGHQCKVKEKRKLMLFILNEEESTV 206
Query: 123 EGEEIEGEKEEEIVELKILKLPTGTEMKLKTLMAFEAKGTMKMRGTLKGKEVIVLIDSRA 166
EG+ EG K+EE VELK L + G E+K K + F +KGTMK++G +KGKEVIVLID A
Sbjct: 207 EGDITEG-KDEEKVELKQLDITEGAEIKFKAITCFTSKGTMKLKGHVKGKEVIVLIDRGA 266
BLAST of PI0020757 vs. NCBI nr
Match:
KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 4.2e-41
Identity = 103/225 (45.78%), Postives = 133/225 (59.11%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
MAE+VL+DAFVTGLEP+LQAEV+SRH +TLE CMREAQLV+D+N AL+L++ E G
Sbjct: 195 MAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNYALKLSKMELGMTEWE 254
Query: 61 ------------------------------------------------------INKGLC 120
+++GLC
Sbjct: 255 VGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLC 314
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KYSP HRCK +EKRELM F+ NEEE E + + E EE VELK L+L T ++
Sbjct: 315 FRCNDKYSPGHRCKTKEKRELMFFIMNEEEEDEEGDSQEEVIEETVELKTLELTDETAIE 374
BLAST of PI0020757 vs. NCBI nr
Match:
KAA0043244.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 4.2e-41
Identity = 102/225 (45.33%), Postives = 136/225 (60.44%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKG----- 60
MAE+VL+DAFVTGLEP+LQAEV+SRH +TLE CM+EAQLV+D+NLAL+L++ E G
Sbjct: 1 MAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMKEAQLVNDRNLALKLSKMELGMTEWE 60
Query: 61 ------------------------------------------------------INKGLC 120
+++GLC
Sbjct: 61 EGGSSKVKKLGDADKPPPRKTDFQMKQITITIKGNFKKGEPPMKRLSDAEFRARLDRGLC 120
Query: 121 FRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEMK 167
FRCN+KYSP HRCK +EKRELM F+ NEEE +EG+ E E E VELK L+L ++
Sbjct: 121 FRCNDKYSPGHRCKTKEKRELMFFIMNEEEENEGDSHE-EVTEGTVELKTLELTEDIAIE 180
BLAST of PI0020757 vs. NCBI nr
Match:
KAA0033896.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 176.8 bits (447), Expect = 1.6e-40
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 0
Query: 1 MAETVLMDAFVTGLEPTLQAEVVSRHLKTLEACMREAQLVSDQNLALQLARAEKGINKGL 60
M+E+VL+DAF+TGLE LQAEV+S H TLE CMREAQ+ Q L + ++KGL
Sbjct: 156 MSESVLIDAFITGLETNLQAEVISHHPVTLEDCMREAQMAESQVKCLSDSEFRARLDKGL 215
Query: 61 CFRCNEKYSPTHRCKVREKRELMLFVFNEEEGSEGEEIEGEKEEEIVELKILKLPTGTEM 120
CF CN+KYS HRCK + RELM+F+ N EE E E+ + E E E VE + L++ TE+
Sbjct: 216 CFHCNDKYSLGHRCKGKTNRELMVFITNAEEELENEKEKEEVETEEVEFETLEVKRKTEI 275
Query: 121 KLKTLMAFEAKGTMKMRGTLKGKEVIVLIDSRATHNFLHQALVDEL 167
L+T++ F +KGTMK+RGT+KG++VI+LIDS ATHNF+HQ +V EL
Sbjct: 276 SLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIVQEL 321
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TG20 | 6.9e-42 | 56.25 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7TIU7 | 2.0e-41 | 45.33 | Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| A0A5A7UYM1 | 2.0e-41 | 45.78 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7SZS5 | 7.7e-41 | 44.44 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3CW02 | 7.7e-41 | 45.33 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_031745528.1 | 2.9e-42 | 45.78 | uncharacterized protein LOC116405915 [Cucumis sativus] | [more] |
| KAA0040209.1 | 1.4e-41 | 56.25 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0061073.1 | 4.2e-41 | 45.78 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0043244.1 | 4.2e-41 | 45.33 | Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0033896.1 | 1.6e-40 | 54.22 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
