Homology
BLAST of PI0020660 vs. ExPASy Swiss-Prot
Match:
Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)
HSP 1 Score: 521.2 bits (1341), Expect = 8.5e-147
Identity = 261/320 (81.56%), Postives = 297/320 (92.81%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TS+DLYS+D TV PVDF+ ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEP I INED+M+TL+ EEK +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319
BLAST of PI0020660 vs. ExPASy Swiss-Prot
Match:
Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)
HSP 1 Score: 484.2 bits (1245), Expect = 1.2e-135
Identity = 246/320 (76.88%), Postives = 284/320 (88.75%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVT+MYEP I INE++M TLT EEK +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YD+EVIKKAEAMGK GL++I + DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319
BLAST of PI0020660 vs. ExPASy Swiss-Prot
Match:
Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)
HSP 1 Score: 265.8 bits (678), Expect = 6.4e-70
Identity = 146/297 (49.16%), Postives = 199/297 (67.00%), Query Frame = 0
Query: 4 SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
S R P+++I E+++D F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL
Sbjct: 6 SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
DEFIAHRLGLIPL S+ ++RDC D +C+ CSVE L KC ++ DVTS
Sbjct: 66 DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125
Query: 124 DLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
DL S + V+PV S ++ E + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVS-SQVTSSNSE----QEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185
Query: 184 AATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDP--VTHQVMVVDPEAYTY 243
+ T+ ++P I +N++ ++ LT ++K WV SCPT+V+ P T QV + DP Y
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVY 245
Query: 244 DDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 299
E KKAE+ GK LV + ++D FIFTVES+GA+K ++L AI I+K+KL ++
Sbjct: 246 CLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
BLAST of PI0020660 vs. ExPASy Swiss-Prot
Match:
Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 1.8e-48
Identity = 119/290 (41.03%), Postives = 167/290 (57.59%), Query Frame = 0
Query: 6 YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122
Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
L S+ V+PV + + ++ I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182
Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDE 245
A V F Y+P ++ + + W +S ELD D YD
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242
Query: 246 VIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKL 295
+ + F + VES G+++ ++L+A+ LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
BLAST of PI0020660 vs. ExPASy Swiss-Prot
Match:
P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)
HSP 1 Score: 193.0 bits (489), Expect = 5.3e-48
Identity = 118/290 (40.69%), Postives = 167/290 (57.59%), Query Frame = 0
Query: 6 YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122
Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
L S+ V+PV + + ++ I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182
Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDE 245
A V F Y+P ++ + + W +S ELD D YD
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242
Query: 246 VIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKL 295
+ + F + VES G+++ ++L+A+ LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
BLAST of PI0020660 vs. ExPASy TrEMBL
Match:
A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)
HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 319/320 (99.69%), Postives = 319/320 (99.69%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. ExPASy TrEMBL
Match:
A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)
HSP 1 Score: 624.0 bits (1608), Expect = 3.4e-175
Identity = 318/320 (99.38%), Postives = 319/320 (99.69%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEK TWVESCPTRVFELDPVTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. ExPASy TrEMBL
Match:
A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)
HSP 1 Score: 610.5 bits (1573), Expect = 3.9e-171
Identity = 309/320 (96.56%), Postives = 317/320 (99.06%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEE++TWVESCPTRVFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. ExPASy TrEMBL
Match:
A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)
HSP 1 Score: 608.6 bits (1568), Expect = 1.5e-170
Identity = 309/320 (96.56%), Postives = 315/320 (98.44%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
+SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. ExPASy TrEMBL
Match:
A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)
HSP 1 Score: 608.6 bits (1568), Expect = 1.5e-170
Identity = 309/320 (96.56%), Postives = 315/320 (98.44%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
+SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. NCBI nr
Match:
XP_004138895.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_006771 [Cucumis sativus])
HSP 1 Score: 624.8 bits (1610), Expect = 4.2e-175
Identity = 319/320 (99.69%), Postives = 319/320 (99.69%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. NCBI nr
Match:
XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])
HSP 1 Score: 624.0 bits (1608), Expect = 7.1e-175
Identity = 318/320 (99.38%), Postives = 319/320 (99.69%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEK TWVESCPTRVFELDPVTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. NCBI nr
Match:
XP_038891253.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida])
HSP 1 Score: 613.2 bits (1580), Expect = 1.3e-171
Identity = 312/320 (97.50%), Postives = 316/320 (98.75%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH+DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHNDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDLYSSDHTVVPVDFSDSAAATGEALD+KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDSKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLM+TLT EEKRTWVESCPTRVFE D VTHQV VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMDTLTPEEKRTWVESCPTRVFEFDSVTHQVTVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. NCBI nr
Match:
XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])
HSP 1 Score: 610.5 bits (1573), Expect = 8.1e-171
Identity = 309/320 (96.56%), Postives = 317/320 (99.06%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEE++TWVESCPTRVFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. NCBI nr
Match:
XP_022927752.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022927753.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022988851.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_022988852.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_023530056.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023530057.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >KAG6588685.1 DNA-directed RNA polymerases II, IV and V subunit 3, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 608.6 bits (1568), Expect = 3.1e-170
Identity = 309/320 (96.56%), Postives = 315/320 (98.44%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
+SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
BLAST of PI0020660 vs. TAIR 10
Match:
AT2G15430.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 521.2 bits (1341), Expect = 6.0e-148
Identity = 261/320 (81.56%), Postives = 297/320 (92.81%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TS+DLYS+D TV PVDF+ ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVTFMYEP I INED+M+TL+ EEK +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319
BLAST of PI0020660 vs. TAIR 10
Match:
AT2G15400.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 484.2 bits (1245), Expect = 8.2e-137
Identity = 246/320 (76.88%), Postives = 284/320 (88.75%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
WSPAATVT+MYEP I INE++M TLT EEK +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240
Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
YD+EVIKKAEAMGK GL++I + DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300
Query: 301 DDTVEADDQFGELGAHMRGG 321
D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319
BLAST of PI0020660 vs. TAIR 10
Match:
AT2G15400.2 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 338.6 bits (867), Expect = 5.6e-93
Identity = 172/231 (74.46%), Postives = 200/231 (86.58%), Query Frame = 0
Query: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180
Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQV 232
WSPAATVT+MYEP I INE++M TLT EEK +ES PT+VF +DPVT QV
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230
BLAST of PI0020660 vs. TAIR 10
Match:
AT1G60850.2 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 129.4 bits (324), Expect = 5.1e-30
Identity = 101/319 (31.66%), Postives = 157/319 (49.22%), Query Frame = 0
Query: 3 GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G+ Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187
Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAATGEALDTK------GIIIVKLRRG 182
+ DL S + T P FS S + E + I+I KL G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247
Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRV 242
QE+ L A A KGIGK HAKWSP T + P + + ++ + L V CP V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307
Query: 243 FELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 298
F+++ + + V P T E ++ + + VD+ + ++ FIF +ESTG++
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367
BLAST of PI0020660 vs. TAIR 10
Match:
AT1G60850.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 129.4 bits (324), Expect = 5.1e-30
Identity = 101/319 (31.66%), Postives = 157/319 (49.22%), Query Frame = 0
Query: 3 GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G+ Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187
Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAATGEALDTK------GIIIVKLRRG 182
+ DL S + T P FS S + E + I+I KL G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247
Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRV 242
QE+ L A A KGIGK HAKWSP T + P + + ++ + L V CP V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307
Query: 243 FELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 298
F+++ + + V P T E ++ + + VD+ + ++ FIF +ESTG++
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q39211 | 8.5e-147 | 81.56 | DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3... | [more] |
Q39212 | 1.2e-135 | 76.88 | DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702... | [more] |
Q54DH7 | 6.4e-70 | 49.16 | DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689... | [more] |
Q3T0Q3 | 1.8e-48 | 41.03 | DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1... | [more] |
P97760 | 5.3e-48 | 40.69 | DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LHS1 | 2.0e-175 | 99.69 | RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ... | [more] |
A0A1S3B3P9 | 3.4e-175 | 99.38 | LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS... | [more] |
A0A6J1D221 | 3.9e-171 | 96.56 | DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ... | [more] |
A0A6J1JIE7 | 1.5e-170 | 96.56 | DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=... | [more] |
A0A6J1ELW4 | 1.5e-170 | 96.56 | DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O... | [more] |
Match Name | E-value | Identity | Description | |
XP_004138895.1 | 4.2e-175 | 99.69 | DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.... | [more] |
XP_008441761.1 | 7.1e-175 | 99.38 | PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni... | [more] |
XP_038891253.1 | 1.3e-171 | 97.50 | DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida] | [more] |
XP_022147788.1 | 8.1e-171 | 96.56 | DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >... | [more] |
XP_022927752.1 | 3.1e-170 | 96.56 | DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >X... | [more] |