PI0020640 (gene) Melon (PI 482460) v1

Overview


Name	PI0020640
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 26137380 .. 26138307 (+)
RNA-Seq Expression	PI0020640
Synteny	PI0020640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGGAAGCCTCCGTAAACCGACGCTTGCAGTTGGTGGAACAAGCCATTGAAGAAATCCGAAAAGGACAATCGGATAGGCAACAATCGATAGAAGATTTGACTAACCTCATCACTCAAATTCATGTGCAACCCTTAGAAGAAGCAAATCAAGAACGGCAAGAAGTACCAAGAAACCAAGCTGCAGCAAATCAAGAACGTCCAAGAAACCAAGTTGTTCACTTCCATAACAATCAACTCTACGAGAACAACTTACCAGGCTACTTGATGGATGATTCCGACTCTTCTGATGAAGATAATTTGCTGAATATCCATCAAGGTCTGCAAAGAGGACTCGGTCTTCGACCATATTTTCAAGAAAATCAAGAAATAAGAATGAAGGTGGATCTTCCTACTTTCAATGGTCGAATGGACGTGGAAAAGTTTCTTGATTGGATCAAGAATGTAGAAAAAAATTTTGACTATGCTAATACCCCAACACAAGAAAGTCCGGTTAGTGGCCTTCAAGCTCCAAGGTGGCACTAGTGCTTGGTGGGATCAATTACAAAATAACAGGTGGCTATTTGGTAAACAACCTATTAGAAGCTGGCCAAAGATGCTAAGGCTCATGAAAAAACGATTTCTGCCAATCAACTACCAACAACTACTTTACGAGCAATATCAACAATGTCACCAAGGCTCTAGAAATATCATGGACTACACAGAAGAGTTCTATAGACTAGGCACTCGCAACAATCTTCCTGAAACTGAACACCAACAAATTTCCAGATTTATTCACGATTTGCGTGATGAAATTAAGGACGTTGTCAACTTACATCCACTTACTTTTCTTTCAGATGCTATTTCCTTGGCGTCCAAGATTGAAGAAAGTGACGAGATCAAGAAAACCAAGACTTATCAAATAAAGAGCCATTGGGATAAATAG

mRNA sequence

ATGGATGCGGAAGCCTCCGTAAACCGACGCTTGCAGTTGGTGGAACAAGCCATTGAAGAAATCCGAAAAGGACAATCGGATAGGCAACAATCGATAGAAGATTTGACTAACCTCATCACTCAAATTCATGTGCAACCCTTAGAAGAAGCAAATCAAGAACGGCAAGAAGTACCAAGAAACCAAGCTGCAGCAAATCAAGAACGTCCAAGAAACCAAGTTGTTCACTTCCATAACAATCAACTCTACGAGAACAACTTACCAGGCTACTTGATGGATGATTCCGACTCTTCTGATGAAGATAATTTGCTGAATATCCATCAAGATGCTATTTCCTTGGCGTCCAAGATTGAAGAAAGTGACGAGATCAAGAAAACCAAGACTTATCAAATAAAGAGCCATTGGGATAAATAG

Coding sequence (CDS)

ATGGATGCGGAAGCCTCCGTAAACCGACGCTTGCAGTTGGTGGAACAAGCCATTGAAGAAATCCGAAAAGGACAATCGGATAGGCAACAATCGATAGAAGATTTGACTAACCTCATCACTCAAATTCATGTGCAACCCTTAGAAGAAGCAAATCAAGAACGGCAAGAAGTACCAAGAAACCAAGCTGCAGCAAATCAAGAACGTCCAAGAAACCAAGTTGTTCACTTCCATAACAATCAACTCTACGAGAACAACTTACCAGGCTACTTGATGGATGATTCCGACTCTTCTGATGAAGATAATTTGCTGAATATCCATCAAGATGCTATTTCCTTGGCGTCCAAGATTGAAGAAAGTGACGAGATCAAGAAAACCAAGACTTATCAAATAAAGAGCCATTGGGATAAATAG

Protein sequence

MDAEASVNRRLQLVEQAIEEIRKGQSDRQQSIEDLTNLITQIHVQPLEEANQERQEVPRNQAAANQERPRNQVVHFHNNQLYENNLPGYLMDDSDSSDEDNLLNIHQDAISLASKIEESDEIKKTKTYQIKSHWDK

Homology

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BLAST of PI0020640 vs. ExPASy TrEMBL
Match: A0A5D3DIZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001160 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 29  QQSIEDLTNLITQIHVQPLEEANQERQEVPRNQAAANQERPRNQVVHFHNNQLYENNLPG 88
           QQSI DLTNL T+IHVQPL EA Q     PRNQAAANQE PR+Q VH HNNQLY NNL G
Sbjct: 2   QQSIVDLTNLFTRIHVQPLGEAIQP----PRNQAAANQEHPRDQAVHIHNNQLYGNNLSG 61

Query: 89  YLMDDSDSSDEDNLLNIHQD---AISLASKIEESDEIKKTKT 128
           YL+DDS+SSDEDNLLNIHQ+    +      +E  EI+   T
Sbjct: 62  YLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKNT 99

[Close]

BLAST of PI0020640 vs. NCBI nr
Match: KAA0045133.1 (hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK23604.1 hypothetical protein E5676_scaffold500G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-21
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 29  QQSIEDLTNLITQIHVQPLEEANQERQEVPRNQAAANQERPRNQVVHFHNNQLYENNLPG 88
           QQSI DLTNL T+IHVQPL EA Q     PRNQAAANQE PR+Q VH HNNQLY NNL G
Sbjct: 2   QQSIVDLTNLFTRIHVQPLGEAIQP----PRNQAAANQEHPRDQAVHIHNNQLYGNNLSG 61

Query: 89  YLMDDSDSSDEDNLLNIHQD---AISLASKIEESDEIKKTKT 128
           YL+DDS+SSDEDNLLNIHQ+    +      +E  EI+   T
Sbjct: 62  YLLDDSNSSDEDNLLNIHQEPQRRLDFRPYFQEDQEIRMKNT 99

[Close]

BLAST of PI0020640 vs. NCBI nr
Match: XP_031745730.1 (uncharacterized protein LOC116406187 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-10
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 51  NQERQEVPRNQAAANQERPRNQVVHFHNNQLYENNLPGYLMDDSDSSDEDNLLNIHQD-- 110
           NQERQE P N +  NQE  RNQ +H HNN+LY NN+PG  + DSDSSDEDNLLNIHQ+  
Sbjct: 628 NQERQERPIN-SVVNQELLRNQPIHIHNNRLYGNNVPGNFLSDSDSSDEDNLLNIHQEPQ 687

Query: 111 -AISLASKIEESDEIK 124
             + L    +E  EI+
Sbjct: 688 QRLGLRPYFQEDQEIR 702

The following BLAST results are available for this feature:

BLAST of PI0020640 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIZ0	2.4e-21	63.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045133.1	5.0e-21	63.73	hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK2360...	[more]
XP_031745730.1	8.9e-10	56.58	uncharacterized protein LOC116406187 [Cucumis sativus]	[more]

BLAST of PI0020640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020640.1	PI0020640.1	mRNA