PI0020401 (gene) Melon (PI 482460) v1

Overview


Name	PI0020401
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Chalcone synthase
Location	chr03: 11725171 .. 11725501 (+)
RNA-Seq Expression	PI0020401
Synteny	PI0020401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAAACATGGAGCTCCATCATTGGATGCTCGCCAAGAAATGATGCAAGAAGAAGTTCCCAAATTAGGAAAAGAAGCAGCTTTGAAAGCCATTCAAGAATGGGGTCAACCAATCTCAAATATTACACATCTCATATTTTGCACTACTTCAACCAAACTTCATTCCTGGGCCTGATTGCCATCTCTCTAAGCTTCTTGGACTTAACAACTCCACAAAAAAATTCATGTTATATAACCAAGGTTGTTTTGTAGCTGGAACTGCACTTCGTTTAGCTAAGGATCTTGCAAGATCGATTGGACATTTTGGTTGGTCAAGCCTTATTTTCTGA

mRNA sequence

ATGTGCAAACATGGAGCTCCATCATTGGATGCTCGCCAAGAAATGATGCAAGAAGAAGTTCCCAAATTAGGAAAAGAAGCAGCTTTGAAAGCCATTCAAGAATGGGGTTGTTTTGTAGCTGGAACTGCACTTCGTTTAGCTAAGGATCTTGCAAGATCGATTGGACATTTTGGTTGGTCAAGCCTTATTTTCTGA

Coding sequence (CDS)

ATGTGCAAACATGGAGCTCCATCATTGGATGCTCGCCAAGAAATGATGCAAGAAGAAGTTCCCAAATTAGGAAAAGAAGCAGCTTTGAAAGCCATTCAAGAATGGGGTTGTTTTGTAGCTGGAACTGCACTTCGTTTAGCTAAGGATCTTGCAAGATCGATTGGACATTTTGGTTGGTCAAGCCTTATTTTCTGA

Protein sequence

MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEWGCFVAGTALRLAKDLARSIGHFGWSSLIF

Homology

[Close]

BLAST of PI0020401 vs. ExPASy Swiss-Prot
Match: P30081 (Chalcone synthase 7 OS=Glycine max OX=3847 GN=CHS7 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-09
Identity = 39/98 (39.80%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC + APSLDARQ+M+  EVPKLGKEAA+KAI+EW                         
Sbjct: 83  MCAYMAPSLDARQDMVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADY 142

[Close]

BLAST of PI0020401 vs. ExPASy Swiss-Prot
Match: Q9ZRR8 (Chalcone synthase OS=Casuarina glauca OX=3522 GN=CHS1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-09
Identity = 38/98 (38.78%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC + APSLDARQ+M+  E+PKLGKEAA+KAI+EW                         
Sbjct: 83  MCAYMAPSLDARQDMVVVEIPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADY 142

[Close]

BLAST of PI0020401 vs. ExPASy Swiss-Prot
Match: Q9AU11 (Polyketide synthase 1 OS=Rubus idaeus OX=32247 GN=PKS1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-09
Identity = 38/98 (38.78%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC++ APSLDARQ+M+  E+PKLGKEAA KAI+EW                         
Sbjct: 83  MCEYMAPSLDARQDMVVVEIPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADY 142

[Close]

BLAST of PI0020401 vs. ExPASy Swiss-Prot
Match: Q9AU10 (Inactive polyketide synthase 2 OS=Rubus idaeus OX=32247 GN=PKS2 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-09
Identity = 38/98 (38.78%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC++ APSLDARQ+M+  E+PKLGKEAA KAI+EW                         
Sbjct: 83  MCEYMAPSLDARQDMVVVEIPKLGKEAATKAIKEWGQLKSKITHLVFCTTSGVDMPGADY 142

[Close]

BLAST of PI0020401 vs. ExPASy Swiss-Prot
Match: Q9AU09 (Polyketide synthase 3 OS=Rubus idaeus OX=32247 GN=PKS3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-09
Identity = 38/98 (38.78%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC++ APSLDARQ+M+  E+PKLGKEAA KAI+EW                         
Sbjct: 83  MCEYMAPSLDARQDMVVVEIPKLGKEAATKAIKEWGQLKSKITHLVFCTTSGVDMPGADY 142

[Close]

BLAST of PI0020401 vs. ExPASy TrEMBL
Match: A0A5D3D594 (Chalcone synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00380 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 50/96 (52.08%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 1  MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEWG------------------------ 52
          MCKHGAPSLDARQEMMQ+EVPKLGKEAALKAIQEWG                        
Sbjct: 1  MCKHGAPSLDARQEMMQKEVPKLGKEAALKAIQEWGQPFSNITHLIFCTTSINSIPGPDC 60

[Close]

BLAST of PI0020401 vs. ExPASy TrEMBL
Match: A0A6A3B2H2 (Chalcone synthase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG01233 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 6  APSLDARQEMMQEEVPKLGKEAALKAIQEWGCFVAGTALRLAKDLARS 54
          APSLDA Q+++  EVPKLGKEAA KAI+EWGCF  G  LRLAKDLA +
Sbjct: 23 APSLDAPQDIVVVEVPKLGKEAATKAIKEWGCFAGGIVLRLAKDLAEN 70

[Close]

BLAST of PI0020401 vs. ExPASy TrEMBL
Match: A0A1R3J345 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07979 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-09
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW----------------GCFVAGTAL 54
           MC + APSLDARQ++  E VPKLG+EAA KAI+EW                GCF  GTAL
Sbjct: 85  MCTYMAPSLDARQDITVEAVPKLGQEAAAKAIKEWLLDLSPSVKRFMVYLQGCFAGGTAL 144

[Close]

BLAST of PI0020401 vs. ExPASy TrEMBL
Match: M0T5Z0 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------GCFVAGT 54
           +C + APSLDARQ+++  E+PKLGKEAA+KAI+EW                  GCF  GT
Sbjct: 83  ICAYMAPSLDARQDIVVVEIPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGQGCFAGGT 142

[Close]

BLAST of PI0020401 vs. ExPASy TrEMBL
Match: M0RHJ6 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------GCFVAGT 54
           +C + APSLDARQ+++  EVPKLGKEAA+KAI+EW                  GCF  GT
Sbjct: 83  VCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGQGCFAGGT 142

[Close]

BLAST of PI0020401 vs. NCBI nr
Match: TYK18690.1 (chalcone synthase [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 50/96 (52.08%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 1  MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEWG------------------------ 52
          MCKHGAPSLDARQEMMQ+EVPKLGKEAALKAIQEWG                        
Sbjct: 1  MCKHGAPSLDARQEMMQKEVPKLGKEAALKAIQEWGQPFSNITHLIFCTTSINSIPGPDC 60

[Close]

BLAST of PI0020401 vs. NCBI nr
Match: QHO06554.1 (Stilbene synthase [Arachis hypogaea])

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW--------------GCFVAGTALRL 54
           MC + APSLDAR++MM  EVP++GKEAA KAI+EW              GCF  GT LRL
Sbjct: 83  MCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGLDPSVKRYMMYHQGCFAGGTVLRL 142

[Close]

BLAST of PI0020401 vs. NCBI nr
Match: KAG5534638.1 (hypothetical protein RHGRI_022680 [Rhododendron griersonianum])

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW-----------------GCFVAGTA 54
           +C++ APSLDARQ+M+  EVPKLGKEAA KAI+EW                 GCF  GT 
Sbjct: 87  VCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGGCFAGGTV 146

[Close]

BLAST of PI0020401 vs. NCBI nr
Match: KAE8710078.1 (Chalcone synthase [Hibiscus syriacus])

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 6  APSLDARQEMMQEEVPKLGKEAALKAIQEWGCFVAGTALRLAKDLARS 54
          APSLDA Q+++  EVPKLGKEAA KAI+EWGCF  G  LRLAKDLA +
Sbjct: 23 APSLDAPQDIVVVEVPKLGKEAATKAIKEWGCFAGGIVLRLAKDLAEN 70

[Close]

BLAST of PI0020401 vs. NCBI nr
Match: OMO89220.1 (hypothetical protein CCACVL1_07979 [Corchorus capsularis])

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-09
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW----------------GCFVAGTAL 54
           MC + APSLDARQ++  E VPKLG+EAA KAI+EW                GCF  GTAL
Sbjct: 85  MCTYMAPSLDARQDITVEAVPKLGQEAAAKAIKEWLLDLSPSVKRFMVYLQGCFAGGTAL 144

[Close]

BLAST of PI0020401 vs. TAIR 10
Match: AT5G13930.1 (Chalcone and stilbene synthase family protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-09
Identity = 36/98 (36.73%), Postives = 44/98 (44.90%), Query Frame = 0


Query: 1   MCKHGAPSLDARQEMMQEEVPKLGKEAALKAIQEW------------------------- 54
           MC + APSLD RQ+++  EVPKLGKEAA+KAI+EW                         
Sbjct: 88  MCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADY 147

The following BLAST results are available for this feature:

BLAST of PI0020401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30081	3.7e-09	39.80	Chalcone synthase 7 OS=Glycine max OX=3847 GN=CHS7 PE=3 SV=1	[more]
Q9ZRR8	4.8e-09	38.78	Chalcone synthase OS=Casuarina glauca OX=3522 GN=CHS1 PE=2 SV=1	[more]
Q9AU11	4.8e-09	38.78	Polyketide synthase 1 OS=Rubus idaeus OX=32247 GN=PKS1 PE=1 SV=1	[more]
Q9AU10	4.8e-09	38.78	Inactive polyketide synthase 2 OS=Rubus idaeus OX=32247 GN=PKS2 PE=3 SV=1	[more]
Q9AU09	4.8e-09	38.78	Polyketide synthase 3 OS=Rubus idaeus OX=32247 GN=PKS3 PE=1 SV=1	[more]

BLAST of PI0020401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D594	5.7e-13	52.08	Chalcone synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00...	[more]
A0A6A3B2H2	2.2e-09	70.83	Chalcone synthase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG0...	[more]
A0A1R3J345	3.8e-09	55.07	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07979 PE=3 ...	[more]
M0T5Z0	1.1e-08	50.70	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1	[more]
M0RHJ6	1.5e-08	50.70	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1	[more]

BLAST of PI0020401 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18690.1	1.2e-12	52.08	chalcone synthase [Cucumis melo var. makuwa]	[more]
QHO06554.1	2.7e-09	55.22	Stilbene synthase [Arachis hypogaea]	[more]
KAG5534638.1	4.6e-09	54.29	hypothetical protein RHGRI_022680 [Rhododendron griersonianum]	[more]
KAE8710078.1	4.6e-09	70.83	Chalcone synthase [Hibiscus syriacus]	[more]
OMO89220.1	7.9e-09	55.07	hypothetical protein CCACVL1_07979 [Corchorus capsularis]	[more]

BLAST of PI0020401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13930.1	3.8e-09	36.73	Chalcone and stilbene synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016039	Thiolase-like	GENE3D	3.40.47.10		coord: 1..37 e-value: 2.5E-7 score: 32.2
IPR016039	Thiolase-like	SUPERFAMILY	53901	Thiolase-like	coord: 2..53
IPR001099	Chalcone/stilbene synthase, N-terminal	PFAM	PF00195	Chal_sti_synt_N	coord: 1..36 e-value: 1.4E-9 score: 37.7
IPR011141	Polyketide synthase, type III	PANTHER	PTHR11877	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	coord: 1..36
None	No IPR available	PANTHER	PTHR11877:SF62	CHALCONE SYNTHASE 7	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020401.1	PI0020401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030639	polyketide biosynthetic process
biological_process	GO:0009058	biosynthetic process
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0016746	acyltransferase activity