Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCGCGACCGGTAACTACCGGAGGAATAGAGGAATCATCAAGTAAGGAAAATCTGTAGAGAGTAATATCGAAGGTGGAGGAACGACTTCCAGCGAAGTTAAAGCTGAGGAAGGAGATAACTCAAGTGATCGAAGTAAGTTCAAAAAGGTGGAAATGCCGGTTTTCAGTGGGACAGATCCCGATTCGTGGCTGTTCAGAGCAGATCAGTATTTTCAGATTCATAAATTGTCTGATTTGGAGAAGATGACTGTAGCGGTTATCAGTTTTCACGAAGCCGCCCTTGACTGGTATAGATCGCAAGAAGAATGCGAGCCATTCAAAGACTGCACGAATCTGAAATAGAGGCTGATGGTTCGATTTCGATTGGTGAGAGAAGGATCAATTTGCGGACGATTTTTGGCAATCAAACAGGAATCAACGGTGGAGGAATATCGAAATTTGTTTGATAAGTTGGTGGGGCTGTTACCACAATTGCCGAAGGAAGTATTGGAGGAGACGTTCATGAATGGGGTGAGTCCATGGATCAAAGCTAAGGTCGAGTGTTGGGGGCCGGTTGGGCTTGCACAAATGATGAAACTAGCCCAACGCGTGGAGAACCGAGAGATTACAAGGAAGGAATCGGGCCTTGAATTAAATAGAGAAGGTAAGGTCCAAACTCAACCATTTTTTATTAAGTCCAATTTTGTATTCCCTGTGAAAGATAACAAAGGTGGAGAGAAATTTTCGATAAGAACAATTATGTTGCGAGGAGCAATGACGACCGGAGTTCAGCGTGAAGGATCGGCGAAGCGAATGACGAATGCGGAATTTCAGGCCAAGAGAGATAAGGGATCATATTCCAATGTGATGAACGATATTTTGCAGGGCATCGCTGCAAAATGA
mRNA sequence
ATGAAAGCGCGACCGGTAACTACCGGAGGAATAGAGGAATCATCAAAGAGTAATATCGAAGGTGGAGGAACGACTTCCAGCGAAGTTAAAGCTGAGGAAGGAGATAACTCAAGTGATCGAAGTAAGTTCAAAAAGGTGGAAATGCCGGTTTTCAGTGGGACAGATCCCGATTCGTGGCTGTTCAGAGCAGATCAGTATTTTCAGATTCATAAATTGTCTGATTTGGAGAAGATGACTGTAGCGGTTATCAGTTTTCACGAAGCCGCCCTTGACTGGCTGATGGTTCGATTTCGATTGGTGAGAGAAGGATCAATTTGCGGACGATTTTTGGCAATCAAACAGGAATCAACGGTGGAGGAATATCGAAATTTGTTTGATAAGTTGGTGGGGCTGTTACCACAATTGCCGAAGGAAGTATTGGAGGAGACGTTCATGAATGGGGTGAGTCCATGGATCAAAGCTAAGGTCGAGTGTTGGGGGCCGGTTGGGCTTGCACAAATGATGAAACTAGCCCAACGCGTGGAGAACCGAGAGATTACAAGGAAGGAATCGGGCCTTGAATTAAATAGAGAAGGTAAGGTCCAAACTCAACCATTTTTTATTAAGTCCAATTTTGTATTCCCTGTGAAAGATAACAAAGGTGGAGAGAAATTTTCGATAAGAACAATTATGTTGCGAGGAGCAATGACGACCGGAGTTCAGCGTGAAGGATCGGCGAAGCGAATGACGAATGCGGAATTTCAGGCCAAGAGAGATAAGGGATCATATTCCAATGTGATGAACGATATTTTGCAGGGCATCGCTGCAAAATGA
Coding sequence (CDS)
ATGAAAGCGCGACCGGTAACTACCGGAGGAATAGAGGAATCATCAAAGAGTAATATCGAAGGTGGAGGAACGACTTCCAGCGAAGTTAAAGCTGAGGAAGGAGATAACTCAAGTGATCGAAGTAAGTTCAAAAAGGTGGAAATGCCGGTTTTCAGTGGGACAGATCCCGATTCGTGGCTGTTCAGAGCAGATCAGTATTTTCAGATTCATAAATTGTCTGATTTGGAGAAGATGACTGTAGCGGTTATCAGTTTTCACGAAGCCGCCCTTGACTGGCTGATGGTTCGATTTCGATTGGTGAGAGAAGGATCAATTTGCGGACGATTTTTGGCAATCAAACAGGAATCAACGGTGGAGGAATATCGAAATTTGTTTGATAAGTTGGTGGGGCTGTTACCACAATTGCCGAAGGAAGTATTGGAGGAGACGTTCATGAATGGGGTGAGTCCATGGATCAAAGCTAAGGTCGAGTGTTGGGGGCCGGTTGGGCTTGCACAAATGATGAAACTAGCCCAACGCGTGGAGAACCGAGAGATTACAAGGAAGGAATCGGGCCTTGAATTAAATAGAGAAGGTAAGGTCCAAACTCAACCATTTTTTATTAAGTCCAATTTTGTATTCCCTGTGAAAGATAACAAAGGTGGAGAGAAATTTTCGATAAGAACAATTATGTTGCGAGGAGCAATGACGACCGGAGTTCAGCGTGAAGGATCGGCGAAGCGAATGACGAATGCGGAATTTCAGGCCAAGAGAGATAAGGGATCATATTCCAATGTGATGAACGATATTTTGCAGGGCATCGCTGCAAAATGA
Protein sequence
MKARPVTTGGIEESSKSNIEGGGTTSSEVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHEAALDWLMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKLVGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLELNREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQAKRDKGSYSNVMNDILQGIAAK
Homology
BLAST of PI0020328 vs. ExPASy TrEMBL
Match:
A0A5A7VLX0 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00050 PE=4 SV=1)
HSP 1 Score: 255.8 bits (652), Expect = 2.1e-64
Identity = 146/248 (58.87%), Postives = 169/248 (68.15%), Query Frame = 0
Query: 17 SNIEGGGTTSSEV-------KAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQI 76
S I+G T + EV KAE +N S+R+KFKKV MPVF+G+DPDSWLF+AD YFQI
Sbjct: 79 STIDGDETLTKEVKNKGQTSKAEGDENFSNRNKFKKVNMPVFNGSDPDSWLFQADHYFQI 138
Query: 77 HKLSDLEKMTVAVISFHEAALDWLMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKLV 136
HKLSDLEK+TV VISF AALDW RF+AIKQE+T+EEYRNLFDKLV
Sbjct: 139 HKLSDLEKLTVEVISFDGAALDWY--------------RFVAIKQETTMEEYRNLFDKLV 198
Query: 137 GLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLELN 196
LPQLPKEVLEETFMNG+ WIKA+VECW AQMMKLAQR ENRE+TR E+GL+ N
Sbjct: 199 APLPQLPKEVLEETFMNGLYLWIKAEVECW----FAQMMKLAQRAENREVTRGEAGLKTN 258
Query: 197 REGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQA 256
EGK Q+ K V +NK G RTI L G T +REG +TNAEFQA
Sbjct: 259 LEGKSQSTLPHNKLTNPSKVSENKSGGTVPKRTITLHGTTTIENRREGPVHTLTNAEFQA 308
Query: 257 KRDKGSYS 258
+RDKG +S
Sbjct: 319 RRDKGLFS 308
BLAST of PI0020328 vs. ExPASy TrEMBL
Match:
A0A5A7TCS3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00660 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 138/266 (51.88%), Postives = 177/266 (66.54%), Query Frame = 0
Query: 14 SSKSNIEGGGTTS------SEVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYF 73
SSK+ IE T+ E K EEG ++DRSKFKKVEMP+F+GTDPDSWLFRAD+YF
Sbjct: 72 SSKTRIEETTITAISNDPKVEGKTEEGP-ATDRSKFKKVEMPIFTGTDPDSWLFRADRYF 131
Query: 74 QIHKLSDLEKMTVAVISFHEAALDW-------------------LMVRFRLVREGSICGR 133
+IH LSDLEK+TVAVISF ALDW ++VRFR +R+G++ GR
Sbjct: 132 KIHNLSDLEKLTVAVISFDGPALDWYRSQEEREAFKGWQDLKQKMLVRFRSIRDGTLVGR 191
Query: 134 FLAIKQESTVEEYRNLFDKLVGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMM 193
FL IKQE+TVEEYRN FDK + + L VLEETFMNG+SPW+K+++E W PVGLAQMM
Sbjct: 192 FLTIKQETTVEEYRNRFDKYLAPVAFLQPVVLEETFMNGLSPWLKSEMETWEPVGLAQMM 251
Query: 194 KLAQRVENREITRKESGLELNREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGA 253
K+A ++ENRE+ RKE GL + K + ++ P +N + +RTI LR
Sbjct: 252 KMALKIENREMVRKECGLSSAYDSKAAQRTTNTRNVNPSPTNENATAGGWPMRTITLREV 311
Query: 254 MTTGVQREGSAKRMTNAEFQAKRDKG 255
T +REG KR+T+AEFQA+R+KG
Sbjct: 312 ATGENRREGPTKRLTDAEFQARREKG 336
BLAST of PI0020328 vs. ExPASy TrEMBL
Match:
A0A5A7T4Y0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001090 PE=4 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 6.2e-61
Identity = 131/246 (53.25%), Postives = 166/246 (67.48%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
E K EE + S DRSKFKKVEMPVF GT+PDSWLFRAD+YF+IH L++ EK+TVAVISF
Sbjct: 191 ETKTEE-ERSVDRSKFKKVEMPVFDGTEPDSWLFRADRYFKIHNLTNSEKLTVAVISFDG 250
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
ALDW ++VRFR REG++ GRFL IKQE+TVEEYRN FDKL
Sbjct: 251 PALDWYRSQEEREAFAGWDDLKQKMLVRFRATREGTLVGRFLTIKQETTVEEYRNRFDKL 310
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG+SPW+K++VE P GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 311 LAPVASLPTVVLEETFMNGLSPWLKSEVETLEPNGLAQMMKLALKIENRELVRRECGLIS 370
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K +P K+ +K+ + +RTI LR T +REG KR+++AEFQ
Sbjct: 371 AYDSKTGHKPLQTKNTIATAMKEGTTSGSWPMRTITLREVATGDNRREGPTKRLSDAEFQ 430
BLAST of PI0020328 vs. ExPASy TrEMBL
Match:
A0A5A7TML6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001190 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 8.2e-61
Identity = 132/246 (53.66%), Postives = 165/246 (67.07%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
EVK EE + DRSKFKKVEMPVF GTDPDSWLFRAD+YF+IH L+D E++TVAVISF
Sbjct: 94 EVKTEE-ERPVDRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVISFDG 153
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
LDW ++VRFR REG++ GRFL IKQESTVEEYRN FDKL
Sbjct: 154 PTLDWYRSQEEREAFTGWDDLKLKMLVRFRATREGTLVGRFLTIKQESTVEEYRNRFDKL 213
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG++PW+K++VE P+GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 214 LAPVASLPTVVLEETFMNGLNPWLKSEVETLEPIGLAQMMKLALKIENRELVRRECGLVS 273
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K+ + KS K+ + +RTI LR T +REG KR++NAEFQ
Sbjct: 274 AYDSKMGHKQQQAKSPVAAATKEGTVSGSWPMRTITLREVGTGDNRREGPTKRLSNAEFQ 333
BLAST of PI0020328 vs. ExPASy TrEMBL
Match:
A0A5A7UVI2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005060 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 8.2e-61
Identity = 132/246 (53.66%), Postives = 166/246 (67.48%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
EVK EE + S D+SKFKKVEMPVF GTDPDSWLFRAD+YF+IH L+D EK+TVAVISF
Sbjct: 148 EVKTEE-ERSVDQSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSEKLTVAVISFDG 207
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
ALDW ++VRFR REG++ GRFL IKQESTVEEYRN FDKL
Sbjct: 208 PALDWYRSQEEREAFTGWDDLKLKMLVRFRATREGTLVGRFLTIKQESTVEEYRNRFDKL 267
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG++PW+K++VE P+GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 268 LAPVASLPTVVLEETFMNGLNPWLKSEVETLEPIGLAQMMKLALKIENRELVRRECGLVS 327
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K + +S K+ + +RTI LR T +REG KR+++AEFQ
Sbjct: 328 AYDSKTGHKQQQARSPIAAATKEGTVSGNWPMRTITLREVGTGDNRREGPTKRLSDAEFQ 387
BLAST of PI0020328 vs. NCBI nr
Match:
KAA0066631.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK04078.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 255.8 bits (652), Expect = 4.3e-64
Identity = 146/248 (58.87%), Postives = 169/248 (68.15%), Query Frame = 0
Query: 17 SNIEGGGTTSSEV-------KAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQI 76
S I+G T + EV KAE +N S+R+KFKKV MPVF+G+DPDSWLF+AD YFQI
Sbjct: 79 STIDGDETLTKEVKNKGQTSKAEGDENFSNRNKFKKVNMPVFNGSDPDSWLFQADHYFQI 138
Query: 77 HKLSDLEKMTVAVISFHEAALDWLMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKLV 136
HKLSDLEK+TV VISF AALDW RF+AIKQE+T+EEYRNLFDKLV
Sbjct: 139 HKLSDLEKLTVEVISFDGAALDWY--------------RFVAIKQETTMEEYRNLFDKLV 198
Query: 137 GLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLELN 196
LPQLPKEVLEETFMNG+ WIKA+VECW AQMMKLAQR ENRE+TR E+GL+ N
Sbjct: 199 APLPQLPKEVLEETFMNGLYLWIKAEVECW----FAQMMKLAQRAENREVTRGEAGLKTN 258
Query: 197 REGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQA 256
EGK Q+ K V +NK G RTI L G T +REG +TNAEFQA
Sbjct: 259 LEGKSQSTLPHNKLTNPSKVSENKSGGTVPKRTITLHGTTTIENRREGPVHTLTNAEFQA 308
Query: 257 KRDKGSYS 258
+RDKG +S
Sbjct: 319 RRDKGLFS 308
BLAST of PI0020328 vs. NCBI nr
Match:
KAA0041254.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK16054.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.5 bits (628), Expect = 2.6e-61
Identity = 138/266 (51.88%), Postives = 177/266 (66.54%), Query Frame = 0
Query: 14 SSKSNIEGGGTTS------SEVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYF 73
SSK+ IE T+ E K EEG ++DRSKFKKVEMP+F+GTDPDSWLFRAD+YF
Sbjct: 72 SSKTRIEETTITAISNDPKVEGKTEEGP-ATDRSKFKKVEMPIFTGTDPDSWLFRADRYF 131
Query: 74 QIHKLSDLEKMTVAVISFHEAALDW-------------------LMVRFRLVREGSICGR 133
+IH LSDLEK+TVAVISF ALDW ++VRFR +R+G++ GR
Sbjct: 132 KIHNLSDLEKLTVAVISFDGPALDWYRSQEEREAFKGWQDLKQKMLVRFRSIRDGTLVGR 191
Query: 134 FLAIKQESTVEEYRNLFDKLVGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMM 193
FL IKQE+TVEEYRN FDK + + L VLEETFMNG+SPW+K+++E W PVGLAQMM
Sbjct: 192 FLTIKQETTVEEYRNRFDKYLAPVAFLQPVVLEETFMNGLSPWLKSEMETWEPVGLAQMM 251
Query: 194 KLAQRVENREITRKESGLELNREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGA 253
K+A ++ENRE+ RKE GL + K + ++ P +N + +RTI LR
Sbjct: 252 KMALKIENREMVRKECGLSSAYDSKAAQRTTNTRNVNPSPTNENATAGGWPMRTITLREV 311
Query: 254 MTTGVQREGSAKRMTNAEFQAKRDKG 255
T +REG KR+T+AEFQA+R+KG
Sbjct: 312 ATGENRREGPTKRLTDAEFQARREKG 336
BLAST of PI0020328 vs. NCBI nr
Match:
KAA0037196.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 244.2 bits (622), Expect = 1.3e-60
Identity = 131/246 (53.25%), Postives = 166/246 (67.48%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
E K EE + S DRSKFKKVEMPVF GT+PDSWLFRAD+YF+IH L++ EK+TVAVISF
Sbjct: 191 ETKTEE-ERSVDRSKFKKVEMPVFDGTEPDSWLFRADRYFKIHNLTNSEKLTVAVISFDG 250
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
ALDW ++VRFR REG++ GRFL IKQE+TVEEYRN FDKL
Sbjct: 251 PALDWYRSQEEREAFAGWDDLKQKMLVRFRATREGTLVGRFLTIKQETTVEEYRNRFDKL 310
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG+SPW+K++VE P GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 311 LAPVASLPTVVLEETFMNGLSPWLKSEVETLEPNGLAQMMKLALKIENRELVRRECGLIS 370
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K +P K+ +K+ + +RTI LR T +REG KR+++AEFQ
Sbjct: 371 AYDSKTGHKPLQTKNTIATAMKEGTTSGSWPMRTITLREVATGDNRREGPTKRLSDAEFQ 430
BLAST of PI0020328 vs. NCBI nr
Match:
KAA0058186.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 132/246 (53.66%), Postives = 166/246 (67.48%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
EVK EE + S D+SKFKKVEMPVF GTDPDSWLFRAD+YF+IH L+D EK+TVAVISF
Sbjct: 148 EVKTEE-ERSVDQSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSEKLTVAVISFDG 207
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
ALDW ++VRFR REG++ GRFL IKQESTVEEYRN FDKL
Sbjct: 208 PALDWYRSQEEREAFTGWDDLKLKMLVRFRATREGTLVGRFLTIKQESTVEEYRNRFDKL 267
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG++PW+K++VE P+GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 268 LAPVASLPTVVLEETFMNGLNPWLKSEVETLEPIGLAQMMKLALKIENRELVRRECGLVS 327
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K + +S K+ + +RTI LR T +REG KR+++AEFQ
Sbjct: 328 AYDSKTGHKQQQARSPIAAATKEGTVSGNWPMRTITLREVGTGDNRREGPTKRLSDAEFQ 387
BLAST of PI0020328 vs. NCBI nr
Match:
KAA0043037.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 132/246 (53.66%), Postives = 165/246 (67.07%), Query Frame = 0
Query: 28 EVKAEEGDNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHE 87
EVK EE + DRSKFKKVEMPVF GTDPDSWLFRAD+YF+IH L+D E++TVAVISF
Sbjct: 94 EVKTEE-ERPVDRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVISFDG 153
Query: 88 AALDW-------------------LMVRFRLVREGSICGRFLAIKQESTVEEYRNLFDKL 147
LDW ++VRFR REG++ GRFL IKQESTVEEYRN FDKL
Sbjct: 154 PTLDWYRSQEEREAFTGWDDLKLKMLVRFRATREGTLVGRFLTIKQESTVEEYRNRFDKL 213
Query: 148 VGLLPQLPKEVLEETFMNGVSPWIKAKVECWGPVGLAQMMKLAQRVENREITRKESGLEL 207
+ + LP VLEETFMNG++PW+K++VE P+GLAQMMKLA ++ENRE+ R+E GL
Sbjct: 214 LAPVASLPTVVLEETFMNGLNPWLKSEVETLEPIGLAQMMKLALKIENRELVRRECGLVS 273
Query: 208 NREGKVQTQPFFIKSNFVFPVKDNKGGEKFSIRTIMLRGAMTTGVQREGSAKRMTNAEFQ 255
+ K+ + KS K+ + +RTI LR T +REG KR++NAEFQ
Sbjct: 274 AYDSKMGHKQQQAKSPVAAATKEGTVSGSWPMRTITLREVGTGDNRREGPTKRLSNAEFQ 333
BLAST of PI0020328 vs. TAIR 10
Match:
AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 43.5 bits (101), Expect = 3.1e-04
Identity = 18/60 (30.00%), Postives = 34/60 (56.67%), Query Frame = 0
Query: 35 DNSSDRSKFKKVEMPVFSGTDPDSWLFRADQYFQIHKLSDLEKMTVAVISFHEAALDWLM 94
DN S S +++EMPVF G+ W + +++F++ + D +K+ + +S AL W +
Sbjct: 101 DNRS--SLIRRIEMPVFDGSGVYEWFSKVERFFRVGRYQDSDKLDLVALSLEGVALKWFL 158
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VLX0 | 2.1e-64 | 58.87 | Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5A7TCS3 | 1.3e-61 | 51.88 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7T4Y0 | 6.2e-61 | 53.25 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7TML6 | 8.2e-61 | 53.66 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7UVI2 | 8.2e-61 | 53.66 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0066631.1 | 4.3e-64 | 58.87 | transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK04078.1 t... | [more] |
| KAA0041254.1 | 2.6e-61 | 51.88 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK16054.1 ty3-gyp... | [more] |
| KAA0037196.1 | 1.3e-60 | 53.25 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0058186.1 | 1.7e-60 | 53.66 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0043037.1 | 1.7e-60 | 53.66 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G67020.1 | 3.1e-04 | 30.00 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
