PI0020145 (gene) Melon (PI 482460) v1

Overview


Name	PI0020145
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Dynein light chain
Location	chr04: 26085604 .. 26086820 (+)
RNA-Seq Expression	PI0020145
Synteny	PI0020145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTATCTCAATACATTTACTAGTGGGCGAGGTTTTTAGCTCCAATTTTTATGGCCAAAAATTGCTCCACCTATTTATAAACAATACAACCTTATTACTATGGTTTATCACATACAAATTTTCTCACTCATCCCCCCCAACTCAAAAAGGAATGTAAAAAAAAAAAGAGAAAACAGAAGCATTTAACTTCAACACTTCAACTTATCCGACTATTCTTTTTGGATTTAGTGATTGATTCTACGAAGATCCAATAGGGACCACGTAGAGAAAATATATGGACATGGATGAGGTTGGGAACACCAACCAAAGTTTATCCTAAAACTCTCTATATAACTAAACCTGTGTTCCCTTCAAGTTCTCTGCCCACAACCGCCGTAAGCTCTTTCGTGTGTGGTGATATAATATTTTATTATTTTAGCCATGTTAGAAGGAAAAGCAATCATCGGAGAAACGGATATGTTGGAGGCCATGCAACAAGACGCTCTTAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGTACAACTTCTATTTCTAAAAAATTACTCCAATACATATAACATTTTATTGTAACACAATTTTTGAACTCATACTATTACTAAAACTTCTACCGTTATGTAAATTTGAGGGTCTAAATTTAATGTACTTTAATGAATATAGCTCAATTGACATGAATTTGTACCATTAAACTTTGTGGTAACGGAATGAAATTGTTATTAAAGGTGTTTTGTTTTGAAAAAATGAGCAGGAATTTGACAGGATATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTGCTCTTTAGGGGTTCTGCTGCCTCTGAAGAAGAACAATTACCTGACCCAACTCAGTTTTCTCTTATGGACACTCTCAAACCATGATTATTACCAATTTTCTTTATTTGTCTTCTCTAATTATCATGTCATATCCCCAAATTTTAATCTTATAATTCATACCTATATGTATCAAAGTGATTTTTTAAATGCTTAAATCACTTTTTCTTATCTTTCATATTATATATACTTTTAATCCTAGTTTCAAAATCAATTTTTATTGTGATGCCCAGTATAATCAGATTATTTAAATTTATTTTGAATATGGTTAGTTA

mRNA sequence

CCTATCTCAATACATTTACTAGTGGGCGAGGTTTTTAGCTCCAATTTTTATGGCCAAAAATTGCTCCACCTATTTATAAACAATACAACCTTATTACTATGGTTTATCACATACAAATTTTCTCACTCATCCCCCCCAACTCAAAAAGGAATGTAAAAAAAAAAAGAGAAAACAGAAGCATTTAACTTCAACACTTCAACTTATCCGACTATTCTTTTTGGATTTAGTGATTGATTCTACGAAGATCCAATAGGGACCACGTAGAGAAAATATATGGACATGGATGAGGTTGGGAACACCAACCAAAGTTTATCCTAAAACTCTCTATATAACTAAACCTGTGTTCCCTTCAAGTTCTCTGCCCACAACCGCCGTAAGCTCTTTCGTGTGTGGTGATATAATATTTTATTATTTTAGCCATGTTAGAAGGAAAAGCAATCATCGGAGAAACGGATATGTTGGAGGCCATGCAACAAGACGCTCTTAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGGATATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTGCTCTTTAGGGGTTCTGCTGCCTCTGAAGAAGAACAATTACCTGACCCAACTCAGTTTTCTCTTATGGACACTCTCAAACCATGATTATTACCAATTTTCTTTATTTGTCTTCTCTAATTATCATGTCATATCCCCAAATTTTAATCTTATAATTCATACCTATATGTATCAAAGTGATTTTTTAAATGCTTAAATCACTTTTTCTTATCTTTCATATTATATATACTTTTAATCCTAGTTTCAAAATCAATTTTTATTGTGATGCCCAGTATAATCAGATTATTTAAATTTATTTTGAATATGGTTAGTTA

Coding sequence (CDS)

ATGTTAGAAGGAAAAGCAATCATCGGAGAAACGGATATGTTGGAGGCCATGCAACAAGACGCTCTTAACCTTGCATCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGGATATATGGGGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTGCTCTTTAGGGGTTCTGCTGCCTCTGAAGAAGAACAATTACCTGACCCAACTCAGTTTTCTCTTATGGACACTCTCAAACCATGA

Protein sequence

MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLKP

Homology

[Close]

BLAST of PI0020145 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          M E KA+I   DM E MQQDA++ A++AL+ F++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of PI0020145 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++AL+ +++ +  DIA FIKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0020145 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          M++ KA+I   DM + MQQDA++ A++AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0020145 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0020145 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.0e-17
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          M + KA+I   DM E MQQDA++ A++A++ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0020145 vs. ExPASy TrEMBL
Match: A0A5A7T1H5 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001190 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDR YGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQL-PDPT--QFSLMDTLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E+QL PDP+   FSL+DTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of PI0020145 vs. ExPASy TrEMBL
Match: A0A1S3BZU7 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDR YGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQL-PDPT--QFSLMDTLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E+QL PDP+   FSL+DTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of PI0020145 vs. ExPASy TrEMBL
Match: A0A6J1IHC9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45
Identity = 90/112 (80.36%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKA+IGETDML+AMQQ+AL+LA+KALDSFDVTE TDIARFIKKEFD +YGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ SE+   P+PTQFS+++T+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEK---PNPTQFSILETIK 109

[Close]

BLAST of PI0020145 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LA+KALD FDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A   +Q P PT F+  +TLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA--PQQHPHPTHFAASETLK 110

[Close]

BLAST of PI0020145 vs. ExPASy TrEMBL
Match: A0A6J1FDE1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKA+IGETDML+AMQQDAL+LA+KALDSFDVTE TDIARFIKKEFD +YGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHC GCFIYFCVGSLA+LLFRGS  S+ EQL DPTQ S+++T+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFRGS--SDSEQL-DPTQLSVLETVK 109

[Close]

BLAST of PI0020145 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 7.1e-53
Identity = 105/112 (93.75%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAIIGETDML+AMQQDALNLA+KALDSFDVTEATDIARFIKKEFD+IYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQ P PTQFS+M+TLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSVMETLK 112

[Close]

BLAST of PI0020145 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA0036763.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa] >TYJ95832.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.1e-51
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDR YGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQL-PDPT--QFSLMDTLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E+QL PDP+   FSL+DTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDTLKP 116

[Close]

BLAST of PI0020145 vs. NCBI nr
Match: XP_004146843.1 (dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical protein Csa_000829 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.7e-49
Identity = 104/116 (89.66%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDRI+GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS-EEEQLPDPT-QFSLMD-TLKP 114
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS +++Q P+PT  FSLMD TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116

[Close]

BLAST of PI0020145 vs. NCBI nr
Match: XP_022976611.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 90/112 (80.36%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKA+IGETDML+AMQQ+AL+LA+KALDSFDVTE TDIARFIKKEFD +YGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ SE+   P+PTQFS+++T+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEK---PNPTQFSILETIK 109

[Close]

BLAST of PI0020145 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 2.7e-44
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LA+KALD FDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQLPDPTQFSLMDTLK 113
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A   +Q P PT F+  +TLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA--PQQHPHPTHFAASETLK 110

[Close]

BLAST of PI0020145 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-36
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          MLEGKA++G+TDM + M++DAL+LASKALD FDVTE T IARFIKKEFDR YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT FGSFVTHC GCFI+F VGSL ILLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of PI0020145 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 107.5 bits (267), Expect = 7.4e-24
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          MLEGKA + ETDM   MQ  A+ +AS++LD FDV ++  IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of PI0020145 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-22
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIV 60
          MLEGKA++ ++DM   MQ  A+  AS+ALD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA 93
          G++FG F TH  G FIYF + +L  L+F+G++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of PI0020145 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YG  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFR 90
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of PI0020145 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRIYGGGWQCIVGTDF 64
           +A+I   DM + MQ++A+ +A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

The following BLAST results are available for this feature:

BLAST of PI0020145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	1.0e-17	52.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	1.0e-17	52.81	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	2.2e-17	50.56	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	2.2e-17	51.69	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	5.0e-17	50.56	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of PI0020145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1H5	2.5e-51	91.38	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G0...	[more]
A0A1S3BZU7	2.5e-51	91.38	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
A0A6J1IHC9	7.6e-45	80.36	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1	[more]
A0A6J1FSQ1	1.3e-44	83.04	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A6J1FDE1	1.7e-44	83.04	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1	[more]

BLAST of PI0020145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899068.1	7.1e-53	93.75	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_008454627.1	5.1e-51	91.38	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA003676...	[more]
XP_004146843.1	4.7e-49	89.66	dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical p...	[more]
XP_022976611.1	1.6e-44	80.36	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]
XP_022941140.1	2.7e-44	83.04	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]

BLAST of PI0020145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	1.7e-36	78.02	Dynein light chain type 1 family protein	[more]
AT3G16120.1	7.4e-24	57.14	Dynein light chain type 1 family protein	[more]
AT1G52240.2	5.3e-22	53.26	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	1.1e-14	50.00	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.8e-14	44.71	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.2E-45 score: 166.8
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 2.7E-32 score: 111.0
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 1..90 e-value: 3.5E-31 score: 109.3
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020145.1	PI0020145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding