PI0020129 (gene) Melon (PI 482460) v1

Overview
NamePI0020129
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 3-like
Locationchr02: 17734249 .. 17734953 (+)
RNA-Seq ExpressionPI0020129
SyntenyPI0020129
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACTAATATATCAGAGAGTTTGAATTCTGCCATGATTAAAGCTAGGGAATTACCAATATGTTTCATGCTCGAGGTCTTGAGAATGATGTTGCAGAAATGGTTTTTGATAGAAGGAATGAAGCTGATTATCAAGTTACTGATTTTACAAAATCCATAGAACAATTTTTAAGGGAACAAATTAAACGTGGTCGATTAATGAAGTTATTTTTCATTTACTGTGAGTATATACATATTCATATTAATTATATACAACATATAATTTTTTATGTATCTATCAATGTAGGTCTATCCCGTTAACAATATGAAATATCAGGTCATCGATGACACCACTCAATATGTTGTGTACTTACCTTCGAAGATTTGTAGTTGTAGGATGTGGGATATATTGCAAATACCGTGTTCGCATGCATGTGTTGTTTTCCCCATCAAACATCTTTCAATAAAGCCATGTGTCCCATTATTATTTGAATAGCACTTTGAGTTCAATATATAGAGGATTAATAAATCCCGCGATCATCGACAATGACAAATACCTGACGATGTTAGATCGATTGTCATCCTCCCACCGAATGTAAAACGTGCAGTAGGTCGACCTAAAAAGATTAGAATTCCTTCTAAAATGGAGTTCAAGAGACGTGTTAAATGTGACCGTTGTGGACGTTTTGCCATTACCGGAAGAGATGTAAGCTTTCCTTATTGA

mRNA sequence

ATGACCACTAATATATCAGAGAGTTTGAATTCTGCCATGATTAAAGCTAGGGAATTACCAATATGTTTCATGCTCGAGGTCTTGAGAATGATGTTGCAGAAATGGTTTTTGATAGAAGGAATGAAGCTGATTATCAAATCGATTGTCATCCTCCCACCGAATGTAAAACGTGCAGTAGGTCGACCTAAAAAGATTAGAATTCCTTCTAAAATGGAGTTCAAGAGACGTGTTAAATGTGACCGTTGTGGACGTTTTGCCATTACCGGAAGAGATGTAAGCTTTCCTTATTGA

Coding sequence (CDS)

ATGACCACTAATATATCAGAGAGTTTGAATTCTGCCATGATTAAAGCTAGGGAATTACCAATATGTTTCATGCTCGAGGTCTTGAGAATGATGTTGCAGAAATGGTTTTTGATAGAAGGAATGAAGCTGATTATCAAATCGATTGTCATCCTCCCACCGAATGTAAAACGTGCAGTAGGTCGACCTAAAAAGATTAGAATTCCTTCTAAAATGGAGTTCAAGAGACGTGTTAAATGTGACCGTTGTGGACGTTTTGCCATTACCGGAAGAGATGTAAGCTTTCCTTATTGA

Protein sequence

MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFLIEGMKLIIKSIVILPPNVKRAVGRPKKIRIPSKMEFKRRVKCDRCGRFAITGRDVSFPY
Homology
BLAST of PI0020129 vs. ExPASy TrEMBL
Match: A0A0A0LBD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603560 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 60/97 (61.86%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 1  MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFLIEG-----------MKLI----- 60
          MTTNISESLN+AMIKARELPIC MLEVLRMMLQ+W+  E             K +     
Sbjct: 1  MTTNISESLNNAMIKARELPICSMLEVLRMMLQRWWFFESRNEAAYQVTNFTKTVEGDHR 60

Query: 61 -------IKSIVILPPNVKRAVGRPKKIRIPSKMEFK 75
                 + SI ILPPNVKR VGRPKKIRIPSKMEFK
Sbjct: 61 QWQVPDDVLSIDILPPNVKRPVGRPKKIRIPSKMEFK 97

BLAST of PI0020129 vs. ExPASy TrEMBL
Match: A0A5D3C2C0 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001990 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 68/168 (40.48%), Postives = 74/168 (44.05%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWF------------------------ 60
           MTTNI ESLNSAM+KARELPIC MLEVLRMMLQ+WF                        
Sbjct: 133 MTTNIYESLNSAMLKARELPICSMLEVLRMMLQRWFFERRNDADYQVTDFTKTIVGLLRE 192

Query: 61  ---LIEGMKL-------------------------------------------------- 85
              L   MK+                                                  
Sbjct: 193 QIELSRSMKVNQVNNLKYQVINGTSQYVIYLPTKSHVSPLYLNSTLSSRYRPVINPLGDH 252

BLAST of PI0020129 vs. ExPASy TrEMBL
Match: A0A5D3DTY1 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00240 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFL----------------IEG---- 60
           MTTNISESLNSAM+KA+ELPIC MLEVLRMMLQ WF                 IEG    
Sbjct: 180 MTTNISESLNSAMLKAKELPICSMLEVLRMMLQIWFFERRNEVDYQVTNFTKTIEGTLRD 239

Query: 61  -------MKL-------------IIKSIVILPPN-----------------------VKR 97
                  MK+               + ++ LP                            
Sbjct: 240 QIERSRSMKVNSVNNMKYQAIDETSQYVIYLPTKHFEFTMKHLSIKLLRGRMTMDIISSG 299

BLAST of PI0020129 vs. ExPASy TrEMBL
Match: A0A5A7TCZ3 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00480 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFL----------------IEG---- 60
           MTTNISESLNSAM+KA+ELPIC MLEVLRMMLQ WF                 IEG    
Sbjct: 339 MTTNISESLNSAMLKAKELPICSMLEVLRMMLQIWFFERRNEVDYQVTNFTKTIEGTLRD 398

Query: 61  -------MKL-------------IIKSIVILPPN-----------------------VKR 97
                  MK+               + ++ LP                            
Sbjct: 399 QIERSRSMKVNSVNNMKYQAIDETSQYVIYLPTKHFEFTMKHLSIKLLRGRMTMDIISSG 458

BLAST of PI0020129 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.0e-11
Identity = 58/169 (34.32%), Postives = 70/169 (41.42%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWF------------------------ 60
           MTTNIS+SLN+AM  A ELPI  MLEV+RMMLQ+WF                        
Sbjct: 404 MTTNISKSLNAAMKDAMELPITSMLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSE 463

Query: 61  ---LIEGMKLI------------------------------------------------I 95
                  MK+                                                 +
Sbjct: 464 QISACRTMKVYAVNNDIYQKHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDV 523

BLAST of PI0020129 vs. NCBI nr
Match: KAA0051992.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 68/168 (40.48%), Postives = 74/168 (44.05%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWF------------------------ 60
           MTTNI ESLNSAM+KARELPIC MLEVLRMMLQ+WF                        
Sbjct: 133 MTTNIYESLNSAMLKARELPICSMLEVLRMMLQRWFFERRNDADYQVTDFTKTIVGLLRE 192

Query: 61  ---LIEGMKL-------------------------------------------------- 85
              L   MK+                                                  
Sbjct: 193 QIELSRSMKVNQVNNLKYQVINGTSQYVIYLPTKSHVSPLYLNSTLSSRYRPVINPLGDH 252

BLAST of PI0020129 vs. NCBI nr
Match: KAA0039149.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFL----------------IEG---- 60
           MTTNISESLNSAM+KA+ELPIC MLEVLRMMLQ WF                 IEG    
Sbjct: 339 MTTNISESLNSAMLKAKELPICSMLEVLRMMLQIWFFERRNEVDYQVTNFTKTIEGTLRD 398

Query: 61  -------MKL-------------IIKSIVILPPN-----------------------VKR 97
                  MK+               + ++ LP                            
Sbjct: 399 QIERSRSMKVNSVNNMKYQAIDETSQYVIYLPTKHFEFTMKHLSIKLLRGRMTMDIISSG 458

BLAST of PI0020129 vs. NCBI nr
Match: TYK26962.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFL----------------IEG---- 60
           MTTNISESLNSAM+KA+ELPIC MLEVLRMMLQ WF                 IEG    
Sbjct: 180 MTTNISESLNSAMLKAKELPICSMLEVLRMMLQIWFFERRNEVDYQVTNFTKTIEGTLRD 239

Query: 61  -------MKL-------------IIKSIVILPPN-----------------------VKR 97
                  MK+               + ++ LP                            
Sbjct: 240 QIERSRSMKVNSVNNMKYQAIDETSQYVIYLPTKHFEFTMKHLSIKLLRGRMTMDIISSG 299

BLAST of PI0020129 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 58/169 (34.32%), Postives = 70/169 (41.42%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWF------------------------ 60
           MTTNIS+SLN+AM  A ELPI  MLEV+RMMLQ+WF                        
Sbjct: 404 MTTNISKSLNAAMKDAMELPITSMLEVVRMMLQRWFYKRQNDVDFQITKFTKSAESKLSE 463

Query: 61  ---LIEGMKLI------------------------------------------------I 95
                  MK+                                                 +
Sbjct: 464 QISACRTMKVYAVNNDIYQKHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDV 523

BLAST of PI0020129 vs. NCBI nr
Match: XP_008463110.1 (PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 59/147 (40.14%), Postives = 69/147 (46.94%), Query Frame = 0

Query: 1   MTTNISESLNSAMIKARELPICFMLEVLRMMLQKWFL----------------IEG---- 60
           MTTNISESLNSAM+KA+ELPIC MLEVLRMMLQ WF                 IEG    
Sbjct: 308 MTTNISESLNSAMLKAKELPICSMLEVLRMMLQIWFFERRNEVDYQVTNFTKTIEGTLRD 367

Query: 61  -------MKL-------------IIKSIVILPPN-----------------------VKR 85
                  MK+               + ++ LP                            
Sbjct: 368 QIERSRSMKVNSVNNMKYQAIDETSQYVIYLPTKHFEFTMKHLSIKLLRGRMTMDIISSG 427

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBD92.0e-1761.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603560 PE=4 SV=1[more]
A0A5D3C2C05.4e-1540.48Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DTY13.6e-1137.74Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TCZ33.6e-1137.74Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1DNQ88.0e-1134.32uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
KAA0051992.11.1e-1440.48protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 prot... [more]
KAA0039149.17.4e-1137.74protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa][more]
TYK26962.17.4e-1137.74protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
XP_022155207.11.7e-1034.32uncharacterized protein LOC111022347 [Momordica charantia][more]
XP_008463110.12.8e-1040.14PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0020129.1PI0020129.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008270 zinc ion binding