PI0020059 (gene) Melon (PI 482460) v1

Overview


Name	PI0020059
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr02: 15583746 .. 15584892 (-)
RNA-Seq Expression	PI0020059
Synteny	PI0020059

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCACGAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAACTGGTGTTCGAGCTACTGAGACCGCTAATAGAGCACTAGAATCGGATGACATATCGAGTAATCCCCATAACGCAGCTGAACAAAACGTGGAAGAAAGTATGTTCAACCGTTTTGCTCAGAGAGTAGCAGACCACCTTTGCCTACAAACCCTGCAGTAGACAAGAGGTTCAACATCGAAAAGTTGAAGGCATTGGGAGCAACGACCTTCGAAGAGACCACTGATCTAGCCGACGTGGAAAAATGGTTGACCTTGATTGGAAGTGTTTTAGGGTGATGGAGTGCCTCAAAGAAAGAAAAGTGAAGTTAGCAACATTTTTGTTGCAAGGAAGTGCTGAAGATTGGTAGACTCTCCAGGTGGTGAAAGCGAGTGGACAAAGCTTTTTTCTTAGGAAGAGTTTCAAAAGGCATTTCGGGACAAGTTTTACACGTGTTCCTTTTGCGACACGAAAAGAAATGAATTTATAAGTTTGGTGCCAGGCAACATGACGGTCACAGGTTATGAAAAGAAATTTACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAATGGATAAATGCAAACGGTTTGAAGACAGTTTGCAAACAGAAATCAAAGCCCCAATGACGGCCAACATGGACTGGTCTGATTTCTCCAGATTAGTAGAAGTTGCCATGAGAGTGGAAAGATGTTTGGTAAAAGAAAAGAAAAACAAGAACACGAGGAAAGGGCCAAGTGGAAGCAAGGGGCCAGGGATACCCAAGTCGCAAGGAAAAGTCTACATGATGACCCAGAGTGAGGCCAGAAATAGGCCACATGTGATCACAAGTTCGTTACTGATTTGTAACTTTCGTAGCTACCAACTCTTTCATTTCTGTATTGCATGCTAAGTCTCTAAACCATAAGGTAGAACCTCTAGAAGATGGAATGTTGATTAGCACGCCTTTAGGCGAGGTGATTATGGTAAAGTCTGTATGTAGGGACTGTGAGTTAAGAATTGCGAATGTCGTGTTGAAAGTAGACTTAATTTTATTTTAGCTTGATGACTTAGACGTGACCTTGGAATGGATTTCCTCACCAAATATCACGCAGTGCTGGATTGCTCCAATAAGGAAGTAG

mRNA sequence

ATGGCACCACGAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAACTGGTGTTCGAGCTACTGAGACCGCTAATAGAGCACTAGAATCGGATGACATATCGAGTAATCCCCATAACGCAGCTGAACAAAACGTGGAAGAAAGCAACATGACGGTCACAGGTTATGAAAAGAAATTTACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAATGGATAAATGCAAACGGTTTGAAGACAGTTTGCAAACAGAAATCAAAGCCCCAATGACGGCCAACATGGACTGGTCTGATTTCTCCAGATTAGTAGAAGTTGCCATGAGAGTGGAAAGATGTTTGGTAAAAGAAAAGAAAAACAAGAACACGAGGAAAGGGCCAAGTGGAAGCAAGGGGCCAGGGATACCCAAGTCGCAAGGAAAAGTCTACATGATGACCCAGAGTGAGGCCAGAAATAGGCCACATGTGATCACAAAACCTCTAGAAGATGGAATGTTGATTAGCACGCCTTTAGGCGAGGTGATTATGGTAAAGTCTGTATGTAGGGACTACGTGACCTTGGAATGGATTTCCTCACCAAATATCACGCAGTGCTGGATTGCTCCAATAAGGAAGTAG

Coding sequence (CDS)

ATGGCACCACGAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAACTGGTGTTCGAGCTACTGAGACCGCTAATAGAGCACTAGAATCGGATGACATATCGAGTAATCCCCATAACGCAGCTGAACAAAACGTGGAAGAAAGCAACATGACGGTCACAGGTTATGAAAAGAAATTTACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAATGGATAAATGCAAACGGTTTGAAGACAGTTTGCAAACAGAAATCAAAGCCCCAATGACGGCCAACATGGACTGGTCTGATTTCTCCAGATTAGTAGAAGTTGCCATGAGAGTGGAAAGATGTTTGGTAAAAGAAAAGAAAAACAAGAACACGAGGAAAGGGCCAAGTGGAAGCAAGGGGCCAGGGATACCCAAGTCGCAAGGAAAAGTCTACATGATGACCCAGAGTGAGGCCAGAAATAGGCCACATGTGATCACAAAACCTCTAGAAGATGGAATGTTGATTAGCACGCCTTTAGGCGAGGTGATTATGGTAAAGTCTGTATGTAGGGACTACGTGACCTTGGAATGGATTTCCTCACCAAATATCACGCAGTGCTGGATTGCTCCAATAAGGAAGTAG

Protein sequence

MAPRGRPRRGRQVATGVRATETANRALESDDISSNPHNAAEQNVEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRLVEVAMRVERCLVKEKKNKNTRKGPSGSKGPGIPKSQGKVYMMTQSEARNRPHVITKPLEDGMLISTPLGEVIMVKSVCRDYVTLEWISSPNITQCWIAPIRK

Homology

[Close]

BLAST of PI0020059 vs. ExPASy TrEMBL
Match: A0A5A7T0V0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold179G00310 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-25
Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 43  NVEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWS---- 102
           N+ + ++TV  YEK+F +LAKYA  FV+DE DKCK+F+D LQTEI+A +T NM+W+    
Sbjct: 50  NLVKGDITVEEYEKRFIELAKYASTFVIDEEDKCKQFKDGLQTEIRAWITNNMNWAFCQI 109

Query: 103 -----DFSRLVEVAMRVERCLVKEKKNKNTRKGPSGSKGPGIPKSQGKVYMMTQSEA-RN 162
                D S   + A  V +    +K       GPSG K P   K QG V  MT+SEA R+
Sbjct: 110 LSKCGDLSEPKKCAQSVNQPYQPDK----AEVGPSGVKRPVRSKLQGYVCAMTRSEATRD 169

Query: 163 RPHVITKPLEDGMLISTPLGEVIMVKSVCRD 184
            PHVIT+PLE  +LISTP GEV +++ VCRD
Sbjct: 170 NPHVITEPLEIELLISTPSGEVFLIEQVCRD 196

[Close]

BLAST of PI0020059 vs. ExPASy TrEMBL
Match: A0A5A7U9I0 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001860 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.4e-22
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 44  VEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRL 103
           +++  +++  YE K+ +L++YA   V  E+D+C+RFE  L +EI+ P+T    WS+FS+L
Sbjct: 70  LKQGALSMVEYECKYIELSRYADVIVASELDRCRRFERGLHSEIRTPVTTIGKWSNFSQL 129

Query: 104 VEVAMRVERCLVKEKKNKNTRKGPSGSKGP---GIPKSQGKVYMMTQSEARNRPHVIT-- 163
           VE A+RVE+ + + K     ++G + ++     G P  QGKVY MTQ  A+N P VIT  
Sbjct: 130 VETALRVEQSITEGKSTVELKEGTNSARQKRVVGRPSQQGKVYAMTQQVAKNAPDVITNR 189

Query: 164 --KPLEDGMLISTPLGEVIMVKSVCRDYVTLEWISSPNITQCWIAPIRK 206
             KPL + ++I TP+G+ ++V  V RD      +  P + +      RK
Sbjct: 190 MLKPLSEELVIYTPVGDALLVNEVLRDCEEGSDLRKPGVAELVFKSERK 238

[Close]

BLAST of PI0020059 vs. ExPASy TrEMBL
Match: A0A5D3BBD8 (Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00320 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-22
Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 0


Query: 46  ESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRLVE 105
           + +MTV  YEKK+T+L+KY    + DE+++CKRF + L+ EI+ PMT   DW+DFS+LVE
Sbjct: 43  QGSMTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVE 102

Query: 106 VAMRVERCLVKEKKNKNTRK---------------------------------GPSG--S 165
            A+RVE+CL + K+ + T K                                 G SG   
Sbjct: 103 AALRVEKCLNERKRERETFKNAEEPRDRVVLVILYLLHETISQQPRTMRTSGEGSSGRKQ 162

Query: 166 KGP-GIPKSQGKVYMMTQSEARNRPHVIT-------KPLEDGMLISTPLGEVIMVKSVCR 200
           KGP G+ + +GKV+ MTQ E    P+++T       + L + +LISTP+G+  +V S  +
Sbjct: 163 KGPVGLSRHEGKVFAMTQHEVAYAPNIVTVRVVKELESLTEELLISTPVGDSFIVNSFSK 222

[Close]

BLAST of PI0020059 vs. ExPASy TrEMBL
Match: A0A5A7V3F2 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00210 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 49  MTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRLVEVAM 108
           MTVT YEK FT+LAKYALAFVV+E DKCKRFE+ L+TEI+A +T +MDWSDFS+LVEV M
Sbjct: 1   MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 109 RVERCLVKEKKNKNTRKGP 128
            VE+C+V++KKN   +K P
Sbjct: 61  SVEKCMVEDKKNNFFKKDP 79

[Close]

BLAST of PI0020059 vs. ExPASy TrEMBL
Match: A0A5A7V373 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003760 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 43  NVEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSR 102
           N+ +  +TV GYEK+FT+LAKYALAFVVDE DKCKRFE+ LQTEI A +T +MD   FS+
Sbjct: 2   NLVKGELTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSK 61

Query: 103 LVEVAMRVERCLVKEKKNKNTRKGPSG 130
           LVE AMRVERC+  +KKNK ++K P G
Sbjct: 62  LVEAAMRVERCMEVDKKNKISKKDPCG 88

[Close]

BLAST of PI0020059 vs. NCBI nr
Match: KAA0036513.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK13467.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-24
Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 43  NVEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWS---- 102
           N+ + ++TV  YEK+F +LAKYA  FV+DE DKCK+F+D LQTEI+A +T NM+W+    
Sbjct: 50  NLVKGDITVEEYEKRFIELAKYASTFVIDEEDKCKQFKDGLQTEIRAWITNNMNWAFCQI 109

Query: 103 -----DFSRLVEVAMRVERCLVKEKKNKNTRKGPSGSKGPGIPKSQGKVYMMTQSEA-RN 162
                D S   + A  V +    +K       GPSG K P   K QG V  MT+SEA R+
Sbjct: 110 LSKCGDLSEPKKCAQSVNQPYQPDK----AEVGPSGVKRPVRSKLQGYVCAMTRSEATRD 169

Query: 163 RPHVITKPLEDGMLISTPLGEVIMVKSVCRD 184
            PHVIT+PLE  +LISTP GEV +++ VCRD
Sbjct: 170 NPHVITEPLEIELLISTPSGEVFLIEQVCRD 196

[Close]

BLAST of PI0020059 vs. NCBI nr
Match: KAA0052004.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK04555.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-21
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 44  VEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRL 103
           +++  +++  YE K+ +L++YA   V  E+D+C+RFE  L +EI+ P+T    WS+FS+L
Sbjct: 70  LKQGALSMVEYECKYIELSRYADVIVASELDRCRRFERGLHSEIRTPVTTIGKWSNFSQL 129

Query: 104 VEVAMRVERCLVKEKKNKNTRKGPSGSKGP---GIPKSQGKVYMMTQSEARNRPHVIT-- 163
           VE A+RVE+ + + K     ++G + ++     G P  QGKVY MTQ  A+N P VIT  
Sbjct: 130 VETALRVEQSITEGKSTVELKEGTNSARQKRVVGRPSQQGKVYAMTQQVAKNAPDVITNR 189

Query: 164 --KPLEDGMLISTPLGEVIMVKSVCRDYVTLEWISSPNITQCWIAPIRK 206
             KPL + ++I TP+G+ ++V  V RD      +  P + +      RK
Sbjct: 190 MLKPLSEELVIYTPVGDALLVNEVLRDCEEGSDLRKPGVAELVFKSERK 238

[Close]

BLAST of PI0020059 vs. NCBI nr
Match: TYJ96623.1 (Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-21
Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 0


Query: 46  ESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRLVE 105
           + +MTV  YEKK+T+L+KY    + DE+++CKRF + L+ EI+ PMT   DW+DFS+LVE
Sbjct: 43  QGSMTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVE 102

Query: 106 VAMRVERCLVKEKKNKNTRK---------------------------------GPSG--S 165
            A+RVE+CL + K+ + T K                                 G SG   
Sbjct: 103 AALRVEKCLNERKRERETFKNAEEPRDRVVLVILYLLHETISQQPRTMRTSGEGSSGRKQ 162

Query: 166 KGP-GIPKSQGKVYMMTQSEARNRPHVIT-------KPLEDGMLISTPLGEVIMVKSVCR 200
           KGP G+ + +GKV+ MTQ E    P+++T       + L + +LISTP+G+  +V S  +
Sbjct: 163 KGPVGLSRHEGKVFAMTQHEVAYAPNIVTVRVVKELESLTEELLISTPVGDSFIVNSFSK 222

[Close]

BLAST of PI0020059 vs. NCBI nr
Match: KAA0062762.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-21
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 49  MTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSRLVEVAM 108
           MTVT YEK FT+LAKYALAFVV+E DKCKRFE+ L+TEI+A +T +MDWSDFS+LVEV M
Sbjct: 1   MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 109 RVERCLVKEKKNKNTRKGP 128
            VE+C+V++KKN   +K P
Sbjct: 61  SVEKCMVEDKKNNFFKKDP 79

[Close]

BLAST of PI0020059 vs. NCBI nr
Match: KAA0062038.1 (hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 43  NVEESNMTVTGYEKKFTKLAKYALAFVVDEMDKCKRFEDSLQTEIKAPMTANMDWSDFSR 102
           N+ +  +TV GYEK+FT+LAKYALAFVVDE DKCKRFE+ LQTEI A +T +MD   FS+
Sbjct: 2   NLVKGELTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSK 61

Query: 103 LVEVAMRVERCLVKEKKNKNTRKGPSG 130
           LVE AMRVERC+  +KKNK ++K P G
Sbjct: 62  LVEAAMRVERCMEVDKKNKISKKDPCG 88

The following BLAST results are available for this feature:

BLAST of PI0020059 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0V0	7.2e-25	48.34	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U9I0	7.4e-22	36.09	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BBD8	9.7e-22	34.52	Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. mak...	[more]
A0A5A7V3F2	2.8e-21	68.35	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V373	3.7e-21	64.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0020059 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036513.1	1.5e-24	48.34	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK13467.1 D...	[more]
KAA0052004.1	1.5e-21	36.09	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK04555.1 Tran...	[more]
TYJ96623.1	2.0e-21	34.52	Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuw...	[more]
KAA0062762.1	5.8e-21	68.35	zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC...	[more]
KAA0062038.1	7.6e-21	64.37	hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020059 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020059.1	PI0020059.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding