PI0020031 (gene) Melon (PI 482460) v1

Overview


Name	PI0020031
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr04: 17996265 .. 17997716 (+)
RNA-Seq Expression	PI0020031
Synteny	PI0020031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATATAACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAATGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGCGTCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATATAACACTTACAACGCCGGTTGGAGAGACAATCCTAATCTTAGATGGGGAAACAACAACCAAAGACCCACACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATATCTTTTCAGAATGAAATGAAACAGCAGATGTCTTATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCTCAACCAGATCATGCCAACGTAAGTGCTATCTCGCTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGTTCTTTACCATCATCTTCTAAAGGTAAATCTCATGTCTTAGATTATTCTCCATATGTCCCTAAGGCCCCTTTTCCTTCCAGGTTAGTTCCTAAGAAGAAAGAGTCGCCTAAGGAAGAAGAACTTCTTGAGATGTTCAGAAAGGTGCAGATAAACCTACCTCTACTTGATGCTATCTAGCAAGTCCCGAGGTATGTGAAATTTCTCAAAGAGTTATGCACCAACAAGAGAAAAATCAAAGAAAAGTCGATGGTAAGTCACAACGTTTCTGCACTTCTTAAGAATTCAATTCCTGAGAAACAAAACGATCCAGGTATGTTTTCTCTTCCTTGTTTTATAGGCAATAGGCCAATTCCCCATGCAATGCTTGACCTAGGAGCTTCTATTAATGTCATGCCTTATTCTGTGTTAAAAGATCTTGAATTAAATAACTTGCAAAAGACAAGAGTATGCATTCAACTAGCTGATATATCTTTTATTTCACCGCTAGGAATAGTTGAAGATGTACTTGTTAAAGTAGACAAATTAATCTTTTCTGTGGATTTCTATATTTTCGAAATGAATGATGCATGTGCAAAACCTTCCCATTCAATTCTTTTAGGAAGACCTTTCCTTAAGACTGCTAAAGCAATAATCGATATAGATAAAGGTTGCCTAAGTGTAGAATTTGATGGAGACGTTATGACATTTAATATTTTCGAATCTATGAAATATCCTGAAGAATGCCTATCTTTATGCTCCTTAGAATTGCATGATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAGTTAGATGAAATTGATGATGATATTTGTTTGCATGAATTTGATGATGAAAAAGAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGGATAAATTCTAATACTTTTTTCTTTTCTCCCTAG

mRNA sequence

ATGCTTAATATAACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAATGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGCGTCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATATAACACTTACAACGCCGGTTGGAGAGACAATCCTAATCTTAGATGGGGAAACAACAACCAAAGACCCACACAAGCAACCTCCTCTTCAAACAATCAAGAATGAAATGAAACAGCAGATGTCTTATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCTCAACCAGATCATGCCAACGTAAGTGCTATCTCGCTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAGAATTGCATGATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAGTTAGATGAAATTGATGATGATATTTGTTTGCATGAATTTGATGATGAAAAAGAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGGATAAATTCTAATACTTTTTTCTTTTCTCCCTAG

Coding sequence (CDS)

ATGCTTAATATAACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAATGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGCGTCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATATAACACTTACAACGCCGGTTGGAGAGACAATCCTAATCTTAGATGGGGAAACAACAACCAAAGACCCACACAAGCAACCTCCTCTTCAAACAATCAAGAATGAAATGAAACAGCAGATGTCTTATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCTCAACCAGATCATGCCAACGTAAGTGCTATCTCGCTTAGAAGTGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAGAATTGCATGATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAGTTAGATGAAATTGATGATGATATTTGTTTGCATGAATTTGATGATGAAAAAGAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGGATAAATTCTAATACTTTTTTCTTTTCTCCCTAG

Protein sequence

MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGETILILDGETTTKDPHKQPPLQTIKNEMKQQMSYLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEELHDEFDELPINNEFAKQELDEIDDDICLHEFDDEKEMVEVEMDEKLNLDGINSNTFFFSP

Homology

[Close]

BLAST of PI0020031 vs. ExPASy TrEMBL
Match: A0A5D3C4I5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00210 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-32
Identity = 82/153 (53.59%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLNITTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N++++YD H    T + +
Sbjct: 54  MLNITTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDPH---GTNLED 113

Query: 61  TILILDGETTTKDPHKQPPLQTIKNEMKQQMSYLTNAISKLEGKGKLPAQPDHANVSAIS 120
            I  L   T            + + EMKQQM+ LT AISK++GKGKL  QPDHANVSAIS
Sbjct: 114 IIKALATNTL-----------SFQQEMKQQMTQLTTAISKMDGKGKLSTQPDHANVSAIS 173

Query: 121 LRSGKILETPSSEEELHDEFDELPINNEFAKQE 154
           LRSGKIL+TP+++E+       LP+N++   +E
Sbjct: 174 LRSGKILDTPTTKEKKVTS-KPLPLNSKNESKE 191

[Close]

BLAST of PI0020031 vs. ExPASy TrEMBL
Match: A0A5D3E1D2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00290 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-31
Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSH-ITLTTPVG 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N++R+YD H  T  +   
Sbjct: 30  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWR 89

Query: 61  ETILILDGE----------------TTTKDPHKQPPLQTI--KNEMKQQMSYLTNAISKL 120
           +   +  G                 T  +D  K   + T+  + EMKQQM+ LT AISK+
Sbjct: 90  DNPKLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKM 149

Query: 121 EGKGKLPAQPDHANVSAISLRSGKILETPSSEEELHDEFDE 143
           +GKGKLPAQP+HANVSAISLRSGKIL+TP+++E+  D   E
Sbjct: 150 DGKGKLPAQPNHANVSAISLRSGKILDTPTTKEKKVDSKKE 190

[Close]

BLAST of PI0020031 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.9e-31
Identity = 82/155 (52.90%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDK P+++E+ N++R+YD H   T  +G 
Sbjct: 183 MLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGN-TYNLGW 242

Query: 61  TILILDGETTTKDPHKQPP--------------------LQTIKNEMKQQMSYLTNAISK 120
                      K  H Q P                      + + EMKQQM+ LT AISK
Sbjct: 243 RDKPNLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISK 302

Query: 121 LEGKGKLPAQPDHANVSAISLRSGKILETPSSEEE 136
           ++GKGKLPAQPDHANVSAISLRSGKIL+TP+++E+
Sbjct: 303 MDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336

[Close]

BLAST of PI0020031 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.9e-31
Identity = 87/176 (49.43%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDK P ++E+ N++R+YD H         
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162

Query: 61  TILIL----DGETTTKDPHKQPPLQT---------------IKNEMKQQMSYLTNAISKL 120
             L L    D +  T+ P       T                + +MKQQM+ LT AISK+
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222

Query: 121 EGKGKLPAQPDHANVSAISLRSGKILETPSSEEELHDEFDELPIN--NEFAKQELD 156
           +GKGKLPAQPDHANVSAISLRSGKIL+TP+++E+       LP+N  NE  ++++D
Sbjct: 223 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKLTS-KPLPLNSKNESKEEKVD 277

[Close]

BLAST of PI0020031 vs. ExPASy TrEMBL
Match: A0A5A7ULU1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002130 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.9e-31
Identity = 91/187 (48.66%), Postives = 112/187 (59.89%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLT----- 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ NV+R+YD H         
Sbjct: 69  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWR 128

Query: 61  --------------TPVGETILILDGETTTKDPHKQPPLQTI--KNEMKQQMSYLTNAIS 120
                         T V  T    +  T  KD  K   + T+  + EMKQQ++ LT AIS
Sbjct: 129 DNPNFRWGNDNQKHTQVPPT--SSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAIS 188

Query: 121 KLEGKGKLPAQPDHANVSAISLRSGKILETP--------------SSEEELHDEFDELPI 153
           K++GKGKLPAQP+HANVS ISLRSGKIL+TP              S EEEL + F ++ I
Sbjct: 189 KMDGKGKLPAQPNHANVSTISLRSGKILDTPPPKRKRLAPKKKETSKEEELLEMFRKVQI 248

[Close]

BLAST of PI0020031 vs. NCBI nr
Match: KAA0066512.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-31
Identity = 82/153 (53.59%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLNITTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N++++YD H    T + +
Sbjct: 54  MLNITTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDPH---GTNLED 113

Query: 61  TILILDGETTTKDPHKQPPLQTIKNEMKQQMSYLTNAISKLEGKGKLPAQPDHANVSAIS 120
            I  L   T            + + EMKQQM+ LT AISK++GKGKL  QPDHANVSAIS
Sbjct: 114 IIKALATNTL-----------SFQQEMKQQMTQLTTAISKMDGKGKLSTQPDHANVSAIS 173

Query: 121 LRSGKILETPSSEEELHDEFDELPINNEFAKQE 154
           LRSGKIL+TP+++E+       LP+N++   +E
Sbjct: 174 LRSGKILDTPTTKEKKVTS-KPLPLNSKNESKE 191

[Close]

BLAST of PI0020031 vs. NCBI nr
Match: TYK29265.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 7.7e-31
Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSH-ITLTTPVG 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N++R+YD H  T  +   
Sbjct: 30  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWR 89

Query: 61  ETILILDGE----------------TTTKDPHKQPPLQTI--KNEMKQQMSYLTNAISKL 120
           +   +  G                 T  +D  K   + T+  + EMKQQM+ LT AISK+
Sbjct: 90  DNPKLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKM 149

Query: 121 EGKGKLPAQPDHANVSAISLRSGKILETPSSEEELHDEFDE 143
           +GKGKLPAQP+HANVSAISLRSGKIL+TP+++E+  D   E
Sbjct: 150 DGKGKLPAQPNHANVSAISLRSGKILDTPTTKEKKVDSKKE 190

[Close]

BLAST of PI0020031 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-30
Identity = 87/176 (49.43%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDK P ++E+ N++R+YD H         
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162

Query: 61  TILIL----DGETTTKDPHKQPPLQT---------------IKNEMKQQMSYLTNAISKL 120
             L L    D +  T+ P       T                + +MKQQM+ LT AISK+
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222

Query: 121 EGKGKLPAQPDHANVSAISLRSGKILETPSSEEELHDEFDELPIN--NEFAKQELD 156
           +GKGKLPAQPDHANVSAISLRSGKIL+TP+++E+       LP+N  NE  ++++D
Sbjct: 223 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEKKLTS-KPLPLNSKNESKEEKVD 277

[Close]

BLAST of PI0020031 vs. NCBI nr
Match: KAA0056048.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-30
Identity = 91/187 (48.66%), Postives = 112/187 (59.89%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLT----- 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ NV+R+YD H         
Sbjct: 69  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWR 128

Query: 61  --------------TPVGETILILDGETTTKDPHKQPPLQTI--KNEMKQQMSYLTNAIS 120
                         T V  T    +  T  KD  K   + T+  + EMKQQ++ LT AIS
Sbjct: 129 DNPNFRWGNDNQKHTQVPPT--SSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAIS 188

Query: 121 KLEGKGKLPAQPDHANVSAISLRSGKILETP--------------SSEEELHDEFDELPI 153
           K++GKGKLPAQP+HANVS ISLRSGKIL+TP              S EEEL + F ++ I
Sbjct: 189 KMDGKGKLPAQPNHANVSTISLRSGKILDTPPPKRKRLAPKKKETSKEEELLEMFRKVQI 248

[Close]

BLAST of PI0020031 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-30
Identity = 82/155 (52.90%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 1   MLNITTLLTSFVQGGSVKVAKCGVCGLVGHPNDKRPDLVEEANVIRKYDSHITLTTPVGE 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDK P+++E+ N++R+YD H   T  +G 
Sbjct: 183 MLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGN-TYNLGW 242

Query: 61  TILILDGETTTKDPHKQPP--------------------LQTIKNEMKQQMSYLTNAISK 120
                      K  H Q P                      + + EMKQQM+ LT AISK
Sbjct: 243 RDKPNLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISK 302

Query: 121 LEGKGKLPAQPDHANVSAISLRSGKILETPSSEEE 136
           ++GKGKLPAQPDHANVSAISLRSGKIL+TP+++E+
Sbjct: 303 MDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336

The following BLAST results are available for this feature:

BLAST of PI0020031 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4I5	5.7e-32	53.59	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3E1D2	3.7e-31	51.55	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CFE7	4.9e-31	52.90	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CB46	4.9e-31	49.43	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7ULU1	4.9e-31	48.66	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0020031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066512.1	1.2e-31	53.59	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotranspos...	[more]
TYK29265.1	7.7e-31	51.55	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK07549.1	1.0e-30	49.43	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0056048.1	1.0e-30	48.66	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK10613.1	1.0e-30	52.90	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0020031 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020031.1	PI0020031.1	mRNA