PI0019983 (gene) Melon (PI 482460) v1

Overview


Name	PI0019983
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Geranylgeranyl transferase type-2 subunit beta
Location	chr01: 3049708 .. 3051372 (-)
RNA-Seq Expression	PI0019983
Synteny	PI0019983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTAAGAGAAGAAGAGGAAGAGGGAAAAAGAAAATTAAGAGTAATTTTGTAATTTTGGCCAATGATGATGAAAGCAACACGACAAAATTCTTGAGTTTCAAAAAGTTGGGCAAAACCCATTTTGGGGTTTGGGGTTTGGGATTGGGTCTGTTATACAAATTTATTGTATCCGTTCATCCATACTCTTAGATAGTAGACTGCTATCCATTTATTACATGTATGTATCCCACCTTAGGTCGTTTACTTTTATGCACAGAGAAAGGATGGTTTTCAATCTGTGATGATGGAACATATTAGAAAGAATGGTCCATACTGGGGTTAATCACATTGGATATTCTTGGAAAGCTAGATACTGTGGATGTTGATGTAGTCATTTCATGGGTCTTGAAATGTTAGCACGAGTCAGGTCTATAACATTCTCTTCTGTCTCAACTTGTATGCCTTTTTGTCTACGTTAATATTGATACATTTTATGGAATTAATGTTCAGTGTTGTGCCATTAGTCTTGCACATCATACATATCATACACATCATACACATCAAACTATTAAATCTTCTGGTTTCTTTTTGTGTTCATACAAAGCTGTTACAGACTCAAGTTGAACGAAATTTCCTTTTTATGCATGTTTGAGGATTTAGATGTAAACGTTGGATCATTTATAACAAAAGCAGAGAAGTGATGCCTAATATATGCAGGTGGTTTGTCTGGCAACATTGGTCATGATCCGCACATACTTTATACCCCTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGAGGTTGATAAGGTGACAGATTGTATCCTTTGGCATTTGGGAGTTGACTTTAATTTATGGCAGTTTATTCTATTGGATCTGTTGCTTCGATTCATTTTACCCATAATTTTCATGAATTTTCGGAGTGGACAATTGATTACCATTACCCAACTACTTACTTCTAAATATTTCAGAACATCCTGTATGTGTCGTCTACTTTTAGAGATTTCATATGCACCTGCTAGTGAAAGTTGGTAATTAAGTTGAGTGTTAACTATATATAAAAATTTATGTGCGACTTAATCTTGTGGTAGATATTGTTGGTTTCAAAATGAAGATGGTTTCTTTTAAAGAGACATTTGGGGTGAAGTAGATTCAAGGTAGTCTACCCATTTGTTTGTTTATTTTTATTATTATTTTGGATTGCATGCTTCATGTTGCTAAATCATTCAATCTACCCCTTTTAACGTAAACAAAGGATCCGCAGTCATTTCCCGATTTCACAACAGCATAAACTGATCCTGGAACAACCACTTTCTCAGCAGACGACTCAAGGGCAAGGGCTGGCCTTTCTTCCTCAACTGAGAATGATGATTCTCCAACTGGAACTAATGAAAGAGATCCGCGGTCCCAAGCTCCTTCCTCTACACACGTGAAAAGTTTTTAAAAGCTGAAAATGTTTATCTCGCAGGTTTTCATATATTGCAATATCTCGTCTATCATTATTACATCAACTGGAGAAAATCAATGTAGAGAAGGCTGTGAACTACATTGTTATCTACCAAAATATGGATGGTGGATTTGGATGCACGCCTGGTGGAGAATCTCACTCTGGACAAAGTATTTTCAACATATCTTGA

mRNA sequence

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTAAGAGAAGAAGAGGAAGAGGGAAAAAGAAAATTAAGAGTAATTTTTTGGGCAAAACCCATTTTGGGGTTTGGGGTTTGGGATTGGGTCTGTGGTTTGTCTGGCAACATTGGTCATGATCCGCACATACTTTATACCCCTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGAGGTTGATAAGGTGACAGATTACATTTGGGGTGAAGTAGATTCAAGGTTTTCATATATTGCAATATCTCGTCTATCATTATTACATCAACTGGAGAAAATCAATGTAGAGAAGGCTGTGAACTACATTGTTATCTACCAAAATATGGATGGTGGATTTGGATGCACGCCTGGTGGAGAATCTCACTCTGGACAAAGTATTTTCAACATATCTTGA

Coding sequence (CDS)

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTAAGAGAAGAAGAGGAAGAGGGAAAAAGAAAATTAAGAGTAATTTTTTGGGCAAAACCCATTTTGGGGTTTGGGGTTTGGGATTGGGTCTGTGGTTTGTCTGGCAACATTGGTCATGATCCGCACATACTTTATACCCCTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGAGGTTGATAAGGTGACAGATTACATTTGGGGTGAAGTAGATTCAAGGTTTTCATATATTGCAATATCTCGTCTATCATTATTACATCAACTGGAGAAAATCAATGTAGAGAAGGCTGTGAACTACATTGTTATCTACCAAAATATGGATGGTGGATTTGGATGCACGCCTGGTGGAGAATCTCACTCTGGACAAAGTATTTTCAACATATCTTGA

Protein sequence

MENDRYQMEEGKLREEEEEGKRKLRVIFWAKPILGFGVWDWVCGLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDYIWGEVDSRFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQSIFNIS

Homology

[Close]

BLAST of PI0019983 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-33
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN GHDPH+LYT SAVQ+LALFDKLN+L+V+KV++Y              IWGEVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINV+KAV+YIV  +N+DGGFGC+PG ESH+GQ
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQ 182

[Close]

BLAST of PI0019983 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-33
Identity = 68/110 (61.82%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDYI--------------WGEVDS 103
           G +GN GHDPHILYT SAVQ+LALFDK+N+L++ KV+ Y+              WGE+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINVEKAV YIV  +N+DGGFGCTPG ESH+GQ
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQ 187

[Close]

BLAST of PI0019983 vs. ExPASy Swiss-Prot
Match: P53611 (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-29
Identity = 57/110 (51.82%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G+S +IGHDPH+LYT SAVQ+L L+D +NV++V+KV +Y              IWGE+D+
Sbjct: 84  GISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDT 143

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFS+ A++ L+LL +L+ INVEKA+ +++   N DGGFGC PG ESH+GQ
Sbjct: 144 RFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQ 193

[Close]

BLAST of PI0019983 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G+S +IGHDPH+LYT SAVQ+L L+D +NV++++KV +Y              IWGE+D+
Sbjct: 84  GISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDT 143

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFS+ A++ L+LL +L+ INVEKA+ +++   N DGGFGC PG ESH+GQ
Sbjct: 144 RFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQ 193

[Close]

BLAST of PI0019983 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-28
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G+S +IGHDPH+LYT SAVQ+L L+D ++V+ VDKV  Y              IWGE+D+
Sbjct: 92  GISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDT 151

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFS+ A++ L+LL +L+ INVEKA+ +++   N DGGFGC PG ESH+GQ
Sbjct: 152 RFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQ 201

[Close]

BLAST of PI0019983 vs. ExPASy TrEMBL
Match: A0A6J1C294 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111007801 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.2e-38
Identity = 85/110 (77.27%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGNIGHDPHILYT SAVQVLALFD+L+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDRLSVLDVDKVTNYIAGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAIS LSLLHQLEKINVEKAVNYI   +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAISCLSLLHQLEKINVEKAVNYIASCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. ExPASy TrEMBL
Match: A0A0A0K723 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_7G433280 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.4e-37
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGN+GHDPHILYT SAVQVLALFDKL+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LSLLHQL+KINVEKAVN++V  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. ExPASy TrEMBL
Match: A0A1S3CDW8 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103499776 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.8e-37
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN+GHDPHILYT SAVQVLALFDKL+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LSLLHQL+KINVEKAVN++V  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. ExPASy TrEMBL
Match: A0A5A7UX72 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002240 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.8e-37
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN+GHDPHILYT SAVQVLALFDKL+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LSLLHQL+KINVEKAVN++V  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. ExPASy TrEMBL
Match: A0A6J1GS02 (Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111456483 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.8e-37
Identity = 82/110 (74.55%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN+GHDPHILYT SAVQVLALFD L+VL+VDKVTDY              IWGEVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDTLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAIS LSLLHQL+KINVEKAVN+IV  +NMDGGFGC PGGESHSGQ
Sbjct: 130 RFSYIAISCLSLLHQLDKINVEKAVNFIVSCKNMDGGFGCIPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 8.2e-38
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGNIGHDPHILYT SAVQVLALFDKL+V++VDKVTDY              IWGEVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDKLSVVDVDKVTDYIVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIA+S LSLL+QLEKINVEKAVNYIV  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAVSCLSLLNQLEKINVEKAVNYIVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. NCBI nr
Match: XP_038887310.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida] >XP_038887311.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 8.2e-38
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGNIGHDPHILYT SAVQVLALFDKL+V++VDKVTDY              IWGEVDS
Sbjct: 44  GFSGNIGHDPHILYTLSAVQVLALFDKLSVVDVDKVTDYIVGLQNEDGSFSGDIWGEVDS 103

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIA+S LSLL+QLEKINVEKAVNYIV  +NMDGGFGCTPGGESHSGQ
Sbjct: 104 RFSYIAVSCLSLLNQLEKINVEKAVNYIVSCKNMDGGFGCTPGGESHSGQ 153

[Close]

BLAST of PI0019983 vs. NCBI nr
Match: XP_022135990.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_022135991.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 85/110 (77.27%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGNIGHDPHILYT SAVQVLALFD+L+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDRLSVLDVDKVTNYIAGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAIS LSLLHQLEKINVEKAVNYI   +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAISCLSLLHQLEKINVEKAVNYIASCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. NCBI nr
Match: XP_011659536.1 (geranylgeranyl transferase type-2 subunit beta 1 [Cucumis sativus] >XP_011659537.1 geranylgeranyl transferase type-2 subunit beta 1 [Cucumis sativus] >XP_031744700.1 geranylgeranyl transferase type-2 subunit beta 1 [Cucumis sativus] >KGN45298.1 hypothetical protein Csa_016422 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-37
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G SGN+GHDPHILYT SAVQVLALFDKL+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LSLLHQL+KINVEKAVN++V  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. NCBI nr
Match: XP_038898588.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN+GHDPHILYT SAVQVLALFDKL+VL+VDKVT+Y              IWGEVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVSLQNEDGSFSGDIWGEVDS 129

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LSLLHQL+KINVEKAVN+IV  +NMDGGFGCTPGGESHSGQ
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKAVNFIVSCKNMDGGFGCTPGGESHSGQ 179

[Close]

BLAST of PI0019983 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN GHDPH+LYT SAVQ+LALFDKLN+L+V+KV++Y              IWGEVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINV+KAV+YIV  +N+DGGFGC+PG ESH+GQ
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQ 182

[Close]

BLAST of PI0019983 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDY--------------IWGEVDS 103
           G +GN GHDPH+LYT SAVQ+LALFDKLN+L+V+KV++Y              IWGEVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINV+KAV+YIV  +N+DGGFGC+PG ESH+GQ
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQ 182

[Close]

BLAST of PI0019983 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 68/110 (61.82%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDYI--------------WGEVDS 103
           G +GN GHDPHILYT SAVQ+LALFDK+N+L++ KV+ Y+              WGE+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINVEKAV YIV  +N+DGGFGCTPG ESH+GQ
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQ 187

[Close]

BLAST of PI0019983 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 68/110 (61.82%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALFDKLNVLEVDKVTDYI--------------WGEVDS 103
           G +GN GHDPHILYT SAVQ+LALFDK+N+L++ KV+ Y+              WGE+D+
Sbjct: 77  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 136

Query: 104 RFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSGQ 140
           RFSYIAI  LS+L  L+KINVEKAV YIV  +N+DGGFGCTPG ESH+GQ
Sbjct: 137 RFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQ 186

[Close]

BLAST of PI0019983 vs. TAIR 10
Match: AT5G40280.1 (Prenyltransferase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 34/112 (30.36%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 44  GLSGNIGHDPHILYTPSAVQVLALF--DK-LNVLEVDKVTDYI--------------WGE 103
           G  G  G  PH+  T +AV  L     DK L+ +  +K++ ++               GE
Sbjct: 147 GYGGGPGQLPHLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGE 206

Query: 104 VDSRFSYIAISRLSLLHQLEKINVEKAVNYIVIYQNMDGGFGCTPGGESHSG 139
           +D R  Y AIS  S+L+ ++    +   +YI+  Q  +GG G  PG E+H G
Sbjct: 207 MDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGG 258

The following BLAST results are available for this feature:

BLAST of PI0019983 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL5	2.2e-33	62.73	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q84J75	2.9e-33	61.82	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
P53611	9.5e-29	51.82	Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGT...	[more]
Q5E9B3	1.2e-28	50.91	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
P53612	6.2e-28	51.82	Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg...	[more]

BLAST of PI0019983 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C294	5.2e-38	77.27	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0K723	4.4e-37	74.55	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3CDW8	9.8e-37	73.64	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UX72	9.8e-37	73.64	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1GS02	9.8e-37	74.55	Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of PI0019983 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887307.1	8.2e-38	77.27	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_038887310.1	8.2e-38	77.27	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]
XP_022135990.1	1.1e-37	77.27	geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_...	[more]
XP_011659536.1	9.1e-37	74.55	geranylgeranyl transferase type-2 subunit beta 1 [Cucumis sativus] >XP_011659537...	[more]
XP_038898588.1	1.6e-36	74.55	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]

BLAST of PI0019983 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12070.1	1.6e-34	62.73	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	1.6e-34	62.73	RAB geranylgeranyl transferase beta subunit 2	[more]
AT5G12210.1	2.0e-34	61.82	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	2.0e-34	61.82	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G40280.1	1.2e-05	30.36	Prenyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001330	PFTB repeat	PFAM	PF00432	Prenyltrans	coord: 83..102 e-value: 2.3 score: 8.0 coord: 108..144 e-value: 4.2E-7 score: 29.6 coord: 44..67 e-value: 1.1 score: 9.1
None	No IPR available	GENE3D	1.50.10.20		coord: 11..144 e-value: 1.1E-23 score: 85.7
None	No IPR available	PANTHER	PTHR11774:SF13	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 43..140
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 43..140
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 43..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019983.1	PI0019983.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0005968	Rab-protein geranylgeranyltransferase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004663	Rab geranylgeranyltransferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0008318	protein prenyltransferase activity