PI0019894 (gene) Melon (PI 482460) v1

Overview


Name	PI0019894
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 12627027 .. 12627600 (+)
RNA-Seq Expression	PI0019894
Synteny	PI0019894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCCTATATATTTCAATGACTTTAAGGTGTTTTCCTTTCCTTTTCATATACTCGTTCCTCTTCATCACGTCTTCTTCTACAATCCTCATCATGGCAACTTCAAGAAACATTCTCCCTTTACCATCCACAACATTGACTAATAATGCATTACCATTCATTCAACGATCATCTCGATACCTAGCTGCGACCACAACTCATACTTCACGTCGCTCCAACTCTCTTAAAATACCTAAGGGAATGCAGGAACAAACATCGACAATGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTCACATGGTCTTCTCCCAGTCCAAAACGTAATAATGTGCAATGCTAAAAAGCTCATTGGTAGACTCATGAGATGACTGTATTCTCGAGTTCAAATCCTCATATGACTTTGATGGTCATTCTCAACTTTCTCAAGATTTGCACCCGACCCACTGGGTCTGTAATCCTCGAAATAATTATAGCATGTACTATTTATGATTATTCATTTTTTGGTTAGGGTTTATTACTCTCTAATACAATTAACCATTCCTCTTCCTCTTTTTAGACAAGACT

mRNA sequence

TATTCCTATATATTTCAATGACTTTAAGGTGTTTTCCTTTCCTTTTCATATACTCGTTCCTCTTCATCACGTCTTCTTCTACAATCCTCATCATGGCAACTTCAAGAAACATTCTCCCTTTACCATCCACAACATTGACTAATAATGCATTACCATTCATTCAACGATCATCTCGATACCTAGCTGCGACCACAACTCATACTTCACGTCGCTCCAACTCTCTTAAAATACCTAAGGGAATGCAGGAACAAACATCGACAATGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTCACATGGTCTTCTCCCAGTCCAAAACGTAATAATGTGCAATGCTAAAAAGCTCATTGGTAGACTCATGAGATGACTGTATTCTCGAGTTCAAATCCTCATATGACTTTGATGGTCATTCTCAACTTTCTCAAGATTTGCACCCGACCCACTGGGTCTGTAATCCTCGAAATAATTATAGCATGTACTATTTATGATTATTCATTTTTTGGTTAGGGTTTATTACTCTCTAATACAATTAACCATTCCTCTTCCTCTTTTTAGACAAGACT

Coding sequence (CDS)

ATGACTTTAAGGTGTTTTCCTTTCCTTTTCATATACTCGTTCCTCTTCATCACGTCTTCTTCTACAATCCTCATCATGGCAACTTCAAGAAACATTCTCCCTTTACCATCCACAACATTGACTAATAATGCATTACCATTCATTCAACGATCATCTCGATACCTAGCTGCGACCACAACTCATACTTCACGTCGCTCCAACTCTCTTAAAATACCTAAGGGAATGCAGGAACAAACATCGACAATGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTCACATGGTCTTCTCCCAGTCCAAAACGTAATAATGTGCAATGCTAA

Protein sequence

MTLRCFPFLFIYSFLFITSSSTILIMATSRNILPLPSTTLTNNALPFIQRSSRYLAATTTHTSRRSNSLKIPKGMQEQTSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC

Homology

[Close]

BLAST of PI0019894 vs. ExPASy TrEMBL
Match: A0A0A0KYN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MTLRCFPFLFIYSFLFITSSSTILIMATSRNILPLPSTTLTNNALPFIQRSSRYLAATTT 60
           M LRCFPFLFIY FLFI SSSTILIMATSRN+LPLP TTLTNNALPF Q+SSRYL ATTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  HTSRRSNSLKIPKGMQEQTSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
            T   S +LK+PK  QEQTSTMTHSTLQSC PKGP+TWSSPSPKRN VQC
Sbjct: 61  STMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of PI0019894 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.7e-34
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MTLRCFPFLFIYSFLFITSSSTILIMATSRNILPLPSTTLTNNALPFIQRSSRYLAATTT 60
           MT RCFPFLFIY F     SS   +MATSRNILPL  TTLTN+AL F+QRSSR+LA TTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  HTSRRSNSLKIPKGMQEQTSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
            TSRRSNSLK+ KG  EQTST THSTLQSCKPKGP+ WSSPSP RNN++C
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

[Close]

BLAST of PI0019894 vs. ExPASy TrEMBL
Match: A0A5A7V1K1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00050 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.1e-27
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 20  SSTILIMATSRNILPLPSTTLTNNALP-FIQRSSRYLAATTTHTSRRSNSLKIPKGMQEQ 79
           SS   +MATSRN LPL  TTLTN+ALP FIQRSSR+LA TTT TSR SNSLK+ KG QEQ
Sbjct: 2   SSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQEQ 61

Query: 80  TSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
           TST THSTL SCKPKGPV WSSPSP RNNV+C
Sbjct: 62  TSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

[Close]

BLAST of PI0019894 vs. NCBI nr
Match: KGN54790.1 (hypothetical protein Csa_012154 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 8.2e-38
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MTLRCFPFLFIYSFLFITSSSTILIMATSRNILPLPSTTLTNNALPFIQRSSRYLAATTT 60
           M LRCFPFLFIY FLFI SSSTILIMATSRN+LPLP TTLTNNALPF Q+SSRYL ATTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  HTSRRSNSLKIPKGMQEQTSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
            T   S +LK+PK  QEQTSTMTHSTLQSC PKGP+TWSSPSPKRN VQC
Sbjct: 61  STMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of PI0019894 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MTLRCFPFLFIYSFLFITSSSTILIMATSRNILPLPSTTLTNNALPFIQRSSRYLAATTT 60
           MT RCFPFLFIY F     SS   +MATSRNILPL  TTLTN+AL F+QRSSR+LA TTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  HTSRRSNSLKIPKGMQEQTSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
            TSRRSNSLK+ KG  EQTST THSTLQSCKPKGP+ WSSPSP RNN++C
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

[Close]

BLAST of PI0019894 vs. NCBI nr
Match: KAA0060707.1 (hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK21843.1 hypothetical protein E5676_scaffold1073G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 20  SSTILIMATSRNILPLPSTTLTNNALP-FIQRSSRYLAATTTHTSRRSNSLKIPKGMQEQ 79
           SS   +MATSRN LPL  TTLTN+ALP FIQRSSR+LA TTT TSR SNSLK+ KG QEQ
Sbjct: 2   SSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQEQ 61

Query: 80  TSTMTHSTLQSCKPKGPVTWSSPSPKRNNVQC 111
           TST THSTL SCKPKGPV WSSPSP RNNV+C
Sbjct: 62  TSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

The following BLAST results are available for this feature:

BLAST of PI0019894 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYN0	4.0e-38	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1	[more]
A0A0A0L2F6	7.7e-34	73.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1	[more]
A0A5A7V1K1	9.1e-27	77.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0019894 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54790.1	8.2e-38	81.82	hypothetical protein Csa_012154 [Cucumis sativus]	[more]
KGN54792.1	1.6e-33	73.64	hypothetical protein Csa_012277 [Cucumis sativus]	[more]
KAA0060707.1	1.9e-26	77.17	hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK2184...	[more]

BLAST of PI0019894 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019894.1	PI0019894.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane