PI0019861 (gene) Melon (PI 482460) v1

Overview


Name	PI0019861
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr09: 9560667 .. 9561137 (+)
RNA-Seq Expression	PI0019861
Synteny	PI0019861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTCAATTCAGCAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATTACTCGATCGGGAGCAGCTGTGGGTCATCTGGTATGTATTTAAATATTGAATGATTACTTTAAATTATTTACTCAATTAAATATTTTCTAATTTTTTTATAATTCATAGAGATCAAACAACAGAAGACTTTGTGATATTGCAGATGATCCACGAGTCTTTGATATATTTAATAATAATGAGACGTACTTGGAGGAGATACATTATATGTATGATGTACCTATTCTACCTCCACCAGTTTACATGGGATGTGTTCGAGTAGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAAACACGGAGCCAAACTGGTTATGGTAGTTCAATGATGATGATGACAGCATTCGGAGTAGGGATATTGTGA

mRNA sequence

ATGGGAGCTTCAATTCAGCAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATTACTCGATCGGGAGCAGCTGTGGGTCATCTGAGATCAAACAACAGAAGACTTTGTGATATTGCAGATGATCCACGAGTCTTTGATATATTTAATAATAATGAGACGTACTTGGAGGAGATACATTATATGTATGATGTACCTATTCTACCTCCACCAGTTTACATGGGATGTGTTCGAGTAGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAAACACGGAGCCAAACTGGTTATGGTAGTTCAATGATGATGATGACAGCATTCGGAGTAGGGATATTGTGA

Coding sequence (CDS)

ATGGGAGCTTCAATTCAGCAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATTACTCGATCGGGAGCAGCTGTGGGTCATCTGAGATCAAACAACAGAAGACTTTGTGATATTGCAGATGATCCACGAGTCTTTGATATATTTAATAATAATGAGACGTACTTGGAGGAGATACATTATATGTATGATGTACCTATTCTACCTCCACCAGTTTACATGGGATGTGTTCGAGTAGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCAGTGACACAAACACGGAGCCAAACTGGTTATGGTAGTTCAATGATGATGATGACAGCATTCGGAGTAGGGATATTGTGA

Protein sequence

MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDPRVFDIFNNNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSMMMMTAFGVGIL

Homology

[Close]

BLAST of PI0019861 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 100/129 (77.52%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR GAAVGHLRSNN RL D+ADDP +V +I N
Sbjct: 102 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICN 161

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN+ Y+EEIH MYD+ I+PPPV+ G VRVEEAELDEVYHNVEEVPP TQT+SQTGYGS M
Sbjct: 162 NNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 221

Query: 121 MMMTAFGVG 129
            MM  FG G
Sbjct: 222 TMMPTFGAG 230

[Close]

BLAST of PI0019861 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-48
Identity = 99/129 (76.74%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR  AAVGHLRSNN RL D+ADDP +V +I N
Sbjct: 111 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICN 170

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN+ Y+EEIH MYD+ I+PPPV+ G VRVEEAELDEVYHNVEEVPP TQT+SQTGYGS M
Sbjct: 171 NNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 230

Query: 121 MMMTAFGVG 129
            MM  FG G
Sbjct: 231 TMMPTFGAG 239

[Close]

BLAST of PI0019861 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 4   SIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDPRVF-DIFNNNE 63
           SIQQFD+DVTQEYIHWY+NITRLYITR GAAVG  RSNN RL D+ADD + F DI NNNE
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 65

Query: 64  TYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSMMMM 123
            Y+EEIH MYD+PI+PPPV+ GCVRVEEAELD+VYHNVEEVP  TQT+SQTGYGS M MM
Sbjct: 66  RYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMM 125

Query: 124 TAFGVG 129
             F  G
Sbjct: 126 PTFEAG 129

[Close]

BLAST of PI0019861 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.9e-45
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 4   SIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFNNNE 63
           SIQQFD DVTQEYIH YNNITRLYITR GA VGHLRSNN RL D+ +DP +V DI NNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341

Query: 64  TYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSMMMM 123
            Y+E+IH +YD+PI+PPPV+    RVEEAELDEVYHNVEEVPP TQT+SQTGYGS M MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

Query: 124 TAFGVG 129
             FG G
Sbjct: 402 PTFGAG 407

[Close]

BLAST of PI0019861 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR GA    +RSNN RL D+ADDP +V DI N
Sbjct: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRLGA----VRSNNARLRDVADDPQQVLDICN 62

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN  Y+EEIH MY+V I+P PV+   VRVEEAELDEVYHNVEEVP  TQT+SQT YGS M
Sbjct: 63  NNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLM 122

Query: 121 MMMTAFGVGIL 131
            MM  FGVG +
Sbjct: 123 TMMPTFGVGFV 129

[Close]

BLAST of PI0019861 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 4.2e-49
Identity = 100/129 (77.52%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR GAAVGHLRSNN RL D+ADDP +V +I N
Sbjct: 102 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICN 161

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN+ Y+EEIH MYD+ I+PPPV+ G VRVEEAELDEVYHNVEEVPP TQT+SQTGYGS M
Sbjct: 162 NNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 221

Query: 121 MMMTAFGVG 129
            MM  FG G
Sbjct: 222 TMMPTFGAG 230

[Close]

BLAST of PI0019861 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.5e-48
Identity = 99/129 (76.74%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR  AAVGHLRSNN RL D+ADDP +V +I N
Sbjct: 111 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICN 170

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN+ Y+EEIH MYD+ I+PPPV+ G VRVEEAELDEVYHNVEEVPP TQT+SQTGYGS M
Sbjct: 171 NNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 230

Query: 121 MMMTAFGVG 129
            MM  FG G
Sbjct: 231 TMMPTFGAG 239

[Close]

BLAST of PI0019861 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 6.2e-45
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 4   SIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDPRVF-DIFNNNE 63
           SIQQFD+DVTQEYIHWY+NITRLYITR GAAVG  RSNN RL D+ADD + F DI NNNE
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 65

Query: 64  TYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSMMMM 123
            Y+EEIH MYD+PI+PPPV+ GCVRVEEAELD+VYHNVEEVP  TQT+SQTGYGS M MM
Sbjct: 66  RYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMM 125

Query: 124 TAFGVG 129
             F  G
Sbjct: 126 PTFEAG 129

[Close]

BLAST of PI0019861 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 8.2e-45
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 4   SIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFNNNE 63
           SIQQFD DVTQEYIH YNNITRLYITR GA VGHLRSNN RL D+ +DP +V DI NNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341

Query: 64  TYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSMMMM 123
            Y+E+IH +YD+PI+PPPV+    RVEEAELDEVYHNVEEVPP TQT+SQTGYGS M MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

Query: 124 TAFGVG 129
             FG G
Sbjct: 402 PTFGAG 407

[Close]

BLAST of PI0019861 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-41
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MGASIQQFDQDVTQEYIHWYNNITRLYITRSGAAVGHLRSNNRRLCDIADDP-RVFDIFN 60
           +G SIQQFD DVTQEYIHWYNNITRLYITR GA    +RSNN RL D+ADDP +V DI N
Sbjct: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRLGA----VRSNNARLRDVADDPQQVLDICN 62

Query: 61  NNETYLEEIHYMYDVPILPPPVYMGCVRVEEAELDEVYHNVEEVPPVTQTRSQTGYGSSM 120
           NN  Y+EEIH MY+V I+P PV+   VRVEEAELDEVYHNVEEVP  TQT+SQT YGS M
Sbjct: 63  NNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLM 122

Query: 121 MMMTAFGVGIL 131
            MM  FGVG +
Sbjct: 123 TMMPTFGVGFV 129

The following BLAST results are available for this feature:

BLAST of PI0019861 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CH23	2.0e-49	77.52	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TBF8	1.7e-48	76.74	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7V342	3.0e-45	76.19	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DJV7	3.9e-45	74.60	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3C2V9	1.2e-41	70.99	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0019861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11193.1	4.2e-49	77.52	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0038951.1	3.5e-48	76.74	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0062642.1	6.2e-45	76.19	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23842.1	8.2e-45	74.60	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0040602.1	2.5e-41	70.99	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0019861 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019861.1	PI0019861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance