PI0019838 (gene) Melon (PI 482460) v1

Overview


Name	PI0019838
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr12: 15293669 .. 15294490 (+)
RNA-Seq Expression	PI0019838
Synteny	PI0019838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGCATGCCCCCACAATGCCATTCCTGAATGCATATTGATGGAGGTGTTCTATTTTGGTCTAAACAAGGCGACACAACAGACTGTTGATGTTGTGTTTGTAGGTGGTATGTTGAAGAGTTCATACAACCAGATAAAGGTGACGCTGGATACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGTGATCAAGGAATGGACAAGAATGTCGTAGTGGCGTTGCAAGGACAAATGACTACGATAAATAATCTTCTGAAATCTATGACAATATCGCAGGTTAATGCCATCGAAAGCTCTGTGCAGGCGGTTAATCAAATGGATGACTTGGGATGCGTGGGATGCGGCGGTCTTCATAATACTGACGCTTGCCCGCTAAATACTAAAACTATTGCATTCATAAGGAACGACCCTTTCTCCAATACCTACAATCCTTGTTGGAGAAACCATCCTAACTTCGGATTGGGAGGAATGGGTCAAATAAATCAAGAGCAACATGGTGGTCAAGGTGACCATCGCGGGGAAGCATCTGGCTCCCACGCGAGGTACCAAAACAACAGACCACAACATTCCCAACATCAACGTCAACACACCACCACTACTCCATCCATTTCTTCATATATGGAAAACCTTATCCGCGAGTATATGCAAAAGAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAGGTGCAGTTGGGGCAGTTAGCTAGCGATTTCTTTAGAAGGCCACAAGGATCTCTCCCAAGCAATATAGAAACGCCAAATTAG

mRNA sequence

ATGGTTAAAGCATGCCCCCACAATGCCATTCCTGAATGCATATTGATGGAGGTGTTCTATTTTGGTCTAAACAAGGCGACACAACAGACTGTTGATGTTGTGTTTGTAGGTGGTATGTTGAAGAGTTCATACAACCAGATAAAGGTGACGCTGGATACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGTGATCAAGGAATGGACAAGAATGTCGTAGTGGCGTTGCAAGGACAAATGACTACGATAAATAATCTTCTGAAATCTATGACAATATCGCAGGTTAATGCCATCGAAAGCTCTGTGCAGGCGGTTAATCAAATGGATGACTTGGGATGCGTGGGATGCGGCGCATCTGGCTCCCACGCGAGGTACCAAAACAACAGACCACAACATTCCCAACATCAACGTCAACACACCACCACTACTCCATCCATTTCTTCATATATGGAAAACCTTATCCGCGAGTATATGCAAAAGAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAGGTGCAGTTGGGGCAGTTAGCTAGCGATTTCTTTAGAAGGCCACAAGGATCTCTCCCAAGCAATATAGAAACGCCAAATTAG

Coding sequence (CDS)

ATGGTTAAAGCATGCCCCCACAATGCCATTCCTGAATGCATATTGATGGAGGTGTTCTATTTTGGTCTAAACAAGGCGACACAACAGACTGTTGATGTTGTGTTTGTAGGTGGTATGTTGAAGAGTTCATACAACCAGATAAAGGTGACGCTGGATACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGTGATCAAGGAATGGACAAGAATGTCGTAGTGGCGTTGCAAGGACAAATGACTACGATAAATAATCTTCTGAAATCTATGACAATATCGCAGGTTAATGCCATCGAAAGCTCTGTGCAGGCGGTTAATCAAATGGATGACTTGGGATGCGTGGGATGCGGCGCATCTGGCTCCCACGCGAGGTACCAAAACAACAGACCACAACATTCCCAACATCAACGTCAACACACCACCACTACTCCATCCATTTCTTCATATATGGAAAACCTTATCCGCGAGTATATGCAAAAGAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAGGTGCAGTTGGGGCAGTTAGCTAGCGATTTCTTTAGAAGGCCACAAGGATCTCTCCCAAGCAATATAGAAACGCCAAATTAG

Protein sequence

MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETPN

Homology

[Close]

BLAST of PI0019838 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 108/223 (48.43%), Postives = 145/223 (65.02%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           M+K CPH+ IPEC+LME FYFGL+K T Q+ ++VF GGML+SSYNQIK  LDTMASN++E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSV 120
           W ++ FG+R      +G RGR + G+D +++VALQGQ+  + N+L+SM + QVN + SSV
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQVNVVRSSV 140

Query: 121 QAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQ 180
           Q V Q++++GCVGC A                H          I +Y++N    I     
Sbjct: 141 QMVQQVNEMGCVGCRA---------------PHNTNACPLNTEIVAYLKNDPTPIHIMWG 200

Query: 181 KNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETPN 215
                + SQASSI+N+E+QLGQL SDF RRP+ S PSN ETPN
Sbjct: 201 GETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPN 227

[Close]

BLAST of PI0019838 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.7e-35
Identity = 98/212 (46.23%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 39  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNL 98
           ML+SSY QIK TLD + +N++E  +DD   +   RGR+D GMD+NV+VALQGQ+T +  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 99  LKSMTISQVNAIESSVQAVNQMDDLGCVGC------------------------------ 158
           L+SM +SQV+A+ + VQAV Q+D++  VGC                              
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 159 ----GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQAS 215
               G +  H +   +RP +S  QHQ Q TT TPS  S M  L+R+YMQ+ DA +QSQ +
Sbjct: 121 GNYRGEAPDHRQRHYDRPHYSAPQHQ-QATTNTPSSFSSMVALLRKYMQRKDAFMQSQTT 180

[Close]

BLAST of PI0019838 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-33
Identity = 74/121 (61.16%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           +VKACP + IPEC+ MEVFYFGL+K T Q V+ +FVGGML+SSYNQIK TLD+M++N++E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQM 120
           WD+  FG+R   RGR+ +G+DK+VVV LQGQM  +NNLL+SMT+SQVNA  + + AV Q+
Sbjct: 81  WDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQV 139

Query: 121 D 122
           +
Sbjct: 141 N 139

[Close]

BLAST of PI0019838 vs. ExPASy TrEMBL
Match: A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 61/129 (47.29%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           M+K C H+ I  C+++E FYFGL++ TQQ VD VF+GGML+ S N IK TLD M SN++E
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WDEDDFGN------RRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSV 120
           W +++FG+       R  +GR+++G + N ++ LQ Q+T +N LL+SM +SQ+NAI SS+
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 121 QAVNQMDDL 124
           + V+Q+ +L
Sbjct: 121 KVVHQVLNL 129

[Close]

BLAST of PI0019838 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           +VKAC H+ I +C+LME FYF L++  QQTVDVVFVGG+L++SYNQ K  LDTM SN++E
Sbjct: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97

Query: 61  WDEDDFGNRR---GGRGRSDQGMDKNVVVALQGQMTTINNLL 100
             +D   +++     RGR+D+GMD+N +V LQGQ+T +N LL
Sbjct: 98  CRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLL 139

[Close]

BLAST of PI0019838 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 5.4e-46
Identity = 108/223 (48.43%), Postives = 145/223 (65.02%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           M+K CPH+ IPEC+LME FYFGL+K T Q+ ++VF GGML+SSYNQIK  LDTMASN++E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSV 120
           W ++ FG+R      +G RGR + G+D +++VALQGQ+  + N+L+SM + QVN + SSV
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQVNVVRSSV 140

Query: 121 QAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQ 180
           Q V Q++++GCVGC A                H          I +Y++N    I     
Sbjct: 141 QMVQQVNEMGCVGCRA---------------PHNTNACPLNTEIVAYLKNDPTPIHIMWG 200

Query: 181 KNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETPN 215
                + SQASSI+N+E+QLGQL SDF RRP+ S PSN ETPN
Sbjct: 201 GETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPN 227

[Close]

BLAST of PI0019838 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-35
Identity = 98/212 (46.23%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 39  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNL 98
           ML+SSY QIK TLD + +N++E  +DD   +   RGR+D GMD+NV+VALQGQ+T +  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 99  LKSMTISQVNAIESSVQAVNQMDDLGCVGC------------------------------ 158
           L+SM +SQV+A+ + VQAV Q+D++  VGC                              
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 159 ----GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQAS 215
               G +  H +   +RP +S  QHQ Q TT TPS  S M  L+R+YMQ+ DA +QSQ +
Sbjct: 121 GNYRGEAPDHRQRHYDRPHYSAPQHQ-QATTNTPSSFSSMVALLRKYMQRKDAFMQSQTT 180

[Close]

BLAST of PI0019838 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 9.0e-33
Identity = 74/121 (61.16%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           +VKACP + IPEC+ MEVFYFGL+K T Q V+ +FVGGML+SSYNQIK TLD+M++N++E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQM 120
           WD+  FG+R   RGR+ +G+DK+VVV LQGQM  +NNLL+SMT+SQVNA  + + AV Q+
Sbjct: 81  WDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQV 139

Query: 121 D 122
           +
Sbjct: 141 N 139

[Close]

BLAST of PI0019838 vs. NCBI nr
Match: XP_038889363.1 (uncharacterized protein LOC120079279 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-27
Identity = 84/250 (33.60%), Postives = 133/250 (53.20%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           +VK C H  IP+C+LM+ FY GLN++TQ   D     G +  +Y + KV L  ++ N ++
Sbjct: 129 LVKNCLHIGIPDCVLMKTFYNGLNRSTQVVADASVARGFMDKTYTEAKVILHRISRNTDD 188

Query: 61  WDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLLKSMTISQ--VNAIESSVQAV 120
             +D +G R   R R+D   +  + +  L  QM  + +LL++M ++Q  ++ I +   A 
Sbjct: 189 CVDDGYGGRGSERRRNDNAIVPLDTMTTLAAQMAAVTSLLQTMALNQGALSQISAQPNAP 248

Query: 121 NQMDDLGCVGCGASGSHARYQN------------------------NRPQHSQHQRQ--- 180
            Q+  + CV CG  G HA + N                        N P   Q+Q Q   
Sbjct: 249 AQVAAISCVQCG--GGHANHPNFGWGGNHNQGGPSNHQSNNFENRGNSPPFHQNQNQGHQ 308

Query: 181 -------HTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQ 214
                   ++ T + SS +E+L+++Y++KND ++QSQ SSIRNLE+Q+GQLA++   R  
Sbjct: 309 PQPQNLPSSSNTSANSSSLESLLKQYIEKNDVVMQSQVSSIRNLEIQVGQLATELRNRTP 368

[Close]

BLAST of PI0019838 vs. NCBI nr
Match: XP_030494802.1 (uncharacterized protein LOC115710583 [Cannabis sativa])

HSP 1 Score: 131.3 bits (329), Expect = 9.7e-27
Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 0


Query: 1   MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEE 60
           +++ CPH+ IP CI +E FY GLN A++  +D    G +L  SYN+    L+ +ASNN +
Sbjct: 103 VLRKCPHHGIPHCIQLETFYNGLNAASRMVLDASANGAILSKSYNEAFEILERIASNNYQ 162

Query: 61  WDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQ--AV 120
           W        R    R   G ++ + + AL  QM ++ N+LK+M +        SVQ  A 
Sbjct: 163 W-----STNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMG------GSVQPAAT 222

Query: 121 NQMDDLGCVGC-------------------GASGSHARY----QNNRPQHSQHQRQHTTT 180
            Q  ++ CV C                   GAS S A      Q+  P  SQ  R     
Sbjct: 223 IQRAEISCVYCGDGHTFENCPSNPASVCYVGASSSGAEQAQGKQSFPPGFSQQPRPQQPH 282

Query: 181 TP--SISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIET 214
            P  S +S +E+L+R+YM KNDA++QSQA+S++NLE+QLGQLA+D   RPQG+LPS+ E 
Sbjct: 283 QPQGSQTSSLESLMRDYMAKNDAVIQSQAASLQNLEIQLGQLANDLKNRPQGTLPSDTEN 332

The following BLAST results are available for this feature:

BLAST of PI0019838 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CC26	2.6e-46	48.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D2S0	4.7e-35	46.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6F9	4.4e-33	61.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]
A0A0A0L0Y4	4.8e-24	47.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1	[more]
A0A5A7TUE1	5.0e-21	54.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0019838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048713.1	5.4e-46	48.43	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KAA0040852.1	9.6e-35	46.23	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
KGN44484.1	9.0e-33	61.16	hypothetical protein Csa_015918 [Cucumis sativus]	[more]
XP_038889363.1	2.5e-27	33.60	uncharacterized protein LOC120079279 [Benincasa hispida]	[more]
XP_030494802.1	9.7e-27	37.76	uncharacterized protein LOC115710583 [Cannabis sativa]	[more]

BLAST of PI0019838 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019838.1	PI0019838.1	mRNA