PI0019795 (gene) Melon (PI 482460) v1

Overview


Name	PI0019795
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	chr02: 19858654 .. 19860488 (-)
RNA-Seq Expression	PI0019795
Synteny	PI0019795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCAATTTCTCTTTCACTCTCTCAATTTCTTCCCTATTTTTCCAAACCCTAAACACTCTGCTCTTCAAATATTTCATTACTATATTCCAAATCTCAAATCCTCCATTATTCCTCAATAATCAATCTCATCATATATTCTTCATGTCTCGCATTGAACCTATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCACAGCTCCTCCGCCTCTCCATCTTGAAATTGGACGGCTCTTCTTTCGGTAACTGTTTCCACCTTTTTTTTCTTCTATTCATTTTCCCTGCCTCCATCTGATTACAAATCCGAATGTTCTGCTTTCGATGTATTTGTTTAATTGATAGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATGTCAATATTTCTTGGTACGTTGTTGGGGATTTGGAATACTGAATCCCGTATATTAATGTATTATATGTGTGTGTGTGTGTGTGTGTTGTATAATGTGTGTGTTGAATTGGAAACTGAAACTTATCAAAAGTTTGTTCAATTATTGTTTATTTGGTTTCAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTTGTATTCAACATTTCGGAATTCGTGATGGTGATCAGGTATTCCCATCTTCCTTTGATAACTGTTTGGCTTTAGTTTTTGAAAATCGAACTTAGGTCTCATTTAATCATCCAAAGGTAATCAATAGATAGTAATTTTGATTATGTTTGTTGTTTGTTTTGTAATCGTAATGAACTATGAACTACCTCCTCCTGTAGACCTTAATCAAAATATAAGGAATGTGCTAAATATGATTATGCTTTAAGATAATAAATGACACACTACTTTTATCTCTCACATTTACCCATAGGTAAAAGGTAAAATAACAAATTTTTAATTCTAATTAATAAACACGGTTAAAAGCAATTCAATTACACTCACGATTCACGATTCACGATTCAGACACATTACAATCAATTCATCAAATGATGAAATCCCAATACGATTACTCATTTTCACTATGGATTAGCAAAGGTGACCCTTAATTGGATTTAATTTCTTGTTATCCACCTGTTTCACGTAAAAAAAAAAGATGAAAATCATTCAAGAAATACAAGTATAATCTTCAAAACCAAATTGGTTGACCAAATTAAACAATTATTTCTCTGTTTCTGTTGTTTGTGACATTTGAGTATTGATGAGTTATATGTTTGTTCCCTTGTGCAGCTGCATTTTGTGGGATTGAGATGTTCCGTAAAGGAATAAATAGATATGTAGAAAGAAATATAGAAAGGTTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGTTTTTGGGCGTGAATTATTATTATAAATTGGTTTGATGATGGATCTTTTTTCTTCTATTTTTCTGATGTTAAATTGGAAGTTTTGGTATATTTATATACAGTATGAAGTAAAGTTCATTGCGGTCATGTTTGGATTGATTTTCTAAATATTTATAAGTGCAAAGAAATGTTTATAAACTATTAGAAAGTTAATCCAAATGGATCCTTCATTTATGTCATTCAACAATGTACTTTTCCTTTGTTTCAATTTAGAAATATAATCCATCAGTCTCTAAGATACTTAATTACTTTAAGAGAAAAACAAAAGAGAGAATAGCGATCATACTCTTCTTTGTTTTTTGATCTCAGATGGTGAATCTCATTGCCTTGTCTAAC

mRNA sequence

TGTCAATTTCTCTTTCACTCTCTCAATTTCTTCCCTATTTTTCCAAACCCTAAACACTCTGCTCTTCAAATATTTCATTACTATATTCCAAATCTCAAATCCTCCATTATTCCTCAATAATCAATCTCATCATATATTCTTCATGTCTCGCATTGAACCTATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCACAGCTCCTCCGCCTCTCCATCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATGTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTTGTATTCAACATTTCGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGGATTGAGATGTTCCGTAAAGGAATAAATAGATATGTAGAAAGAAATATAGAAAGGTTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGTTTTTGGGCGTGAATTATTATTATAAATTGGTTTGATGATGGATCTTTTTTCTTCTATTTTTCTGATGTTAAATTGGAAGTTTTGGTATATTTATATACAGTATGAAGTAAAGTTCATTGCGGTCATGTTTGGATTGATTTTCTAAATATTTATAAGTGCAAAGAAATGTTTATAAACTATTAGAAAGTTAATCCAAATGGATCCTTCATTTATGTCATTCAACAATGTACTTTTCCTTTGTTTCAATTTAGAAATATAATCCATCAGTCTCTAAGATACTTAATTACTTTAAGAGAAAAACAAAAGAGAGAATAGCGATCATACTCTTCTTTGTTTTTTGATCTCAGATGGTGAATCTCATTGCCTTGTCTAAC

Coding sequence (CDS)

ATGTCTCGCATTGAACCTATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCACAGCTCCTCCGCCTCTCCATCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATGTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTTGTATTCAACATTTCGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGGATTGAGATGTTCCGTAAAGGAATAA

Protein sequence

MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFVGLRCSVKE

Homology

[Close]

BLAST of PI0019795 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCY 96
           +RLS++KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSCIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of PI0019795 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-05
Identity = 25/89 (28.09%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 35  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFC 94
           Q + + + K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 95  LCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 126

[Close]

BLAST of PI0019795 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 25/89 (28.09%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 35  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFC 94
           Q + + + K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117

[Close]

BLAST of PI0019795 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-05
Identity = 25/89 (28.09%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 35  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFC 94
           Q + + + K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117

[Close]

BLAST of PI0019795 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.4e-65
Identity = 120/129 (93.02%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRF SNSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VGLRCSVKE 130
           V LRC ++E
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of PI0019795 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.5e-65
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VGLRCSVKE 130
           V LRC V+E
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of PI0019795 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.5e-65
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VGLRCSVKE 130
           V LRC V+E
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of PI0019795 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 VGLRCSVKE 130
             L C+  E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of PI0019795 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           M RIEP +PDSCCISPRFRSNSFRRSLRY RLP +LL LS+LKLDGSSFEVQV R A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+EDV ISWPHVW HFCLCYKH+KL+D+KS I+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of PI0019795 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 7.0e-65
Identity = 120/129 (93.02%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRF SNSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VGLRCSVKE 130
           V LRC ++E
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of PI0019795 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.2e-65
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VGLRCSVKE 130
           V LRC V+E
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of PI0019795 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKLMDDKS IQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 VGLRCSVKE 130
             L C+  E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of PI0019795 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 6.6e-55
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MSRIEP+VPDSCCISPRFRSNSFRRS RY +LPPQL+RLS+LKLDGSSFEVQ+ RTATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQL 119
           AVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL+DDKS I+HFGIRDGDQ+
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQI 118

[Close]

BLAST of PI0019795 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVA 60
           MSRIEP +PDSCCISPRFRSNSFRRSLRY RLP +LL LS+LKLDGSSFEVQV R A+VA
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  AVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+EDV ISWPHVW HFCLCYKH+KL+D+KS I+ FGIRDGD LHF
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 140

Query: 121 V 122
           V
Sbjct: 141 V 141

[Close]

BLAST of PI0019795 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-23
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNIS 83
           RRS  YN++P + ++L++LKLDGSSF +QV +TATV  ++ AVE+ F  + ++     IS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
           WPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFI 121

[Close]

BLAST of PI0019795 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 14  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSILKLDGSSFEVQVERTATVAAVR 73
           I PRF S+         S RRS  Y +LPPQ  ++LS++KL+GS F+V+V +  +VA ++
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 74  DAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
            AVE VF    +    + ISW HVWGHFCLCY+  +L++DK+ I++ G+ DGDQLHFV
Sbjct: 81  RAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFV 136

[Close]

BLAST of PI0019795 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNIS 83
           RR+  Y++LP + +RLS+LKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    IS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 84  WPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF 121
           W HVWGHFCLC+   KL+ D  CI ++G++DGD++ F
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRF 101

[Close]

BLAST of PI0019795 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 32  LPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHF 91
           +P + ++L++LKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 92  CLCYKHFKLMDDKSCIQHFGIRDGDQLHFV 122
           CL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFI 86

[Close]

BLAST of PI0019795 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-13
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCY 96
           +RLS++KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSCIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of PI0019795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.2e-11	40.70	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	3.8e-05	28.09	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	5.0e-05	28.09	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	6.5e-05	28.09	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of PI0019795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94	3.4e-65	93.02	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	4.5e-65	93.02	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	4.5e-65	93.02	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3B9C0	1.5e-60	88.37	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	2.4e-50	79.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of PI0019795 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655436.1	7.0e-65	93.02	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443964.1	9.2e-65	93.02	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_008443963.1	3.1e-60	88.37	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_038880358.1	6.6e-55	87.29	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_023531556.1	1.3e-50	80.17	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]

BLAST of PI0019795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	4.2e-23	47.96	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	9.3e-23	47.46	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.1e-22	48.45	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.2e-17	45.56	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	8.7e-13	40.70	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 37..121 e-value: 2.7E-24 score: 85.0
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 37..121 e-value: 4.91577E-37 score: 119.545
None	No IPR available	GENE3D	3.10.20.90		coord: 33..128 e-value: 3.7E-31 score: 108.9
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 6..121
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 6..121
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019795.1	PI0019795.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex