Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCTCTAGCTCAGAATCCGACTTCACCCCAGTCATCCCAACCTCCACCAAATCATCTCCTTCAAGCAATACCTTTGTCCCTACTTCCACTCTCTTCTTACTATTCAATATTTGCAATCTTGTACCCATTTGTTTAGATTCCACCAATTACATCCTTTGGAAGTATCAAGTCTCTTCTATTCTCAAAGCACACTCTCTTTTTGACCACCTTGATGAATCCCTGCCCTGCCCATCAAAACAGCTTGCCTCACCCACCGCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACATTATCGTTCTCTACCCTTACCCATGTAGTTGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCATATCCAACATCCTTGATTTAAGGTCTGCCCTTTATACCATAAAAAAATCTCCTTCTGAAACAATCAACCAGTACACCAGCCGCATCAAAGCATTCGTCAACAAAATTGCTGCCACATAA
mRNA sequence
ATGGCTGCCTCTAGCTCAGAATCCGACTTCACCCCAGTCATCCCAACCTCCACCAAATCATCTCCTTCAAGCAATACCTTTGTCCCTACTTCCACTCTCTTCTTACTATTCAATATTTGCAATCTTGTACCCATTTGTTTAGATTCCACCAATTACATCCTTTGGAAGTATCAAGTCTCTTCTATTCTCAAAGCACACTCTCTTTTTGACCACCTTGATGAATCCCTGCCCTGCCCATCAAAACAGCTTGCCTCACCCACCGCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACATTATCGTTCTCTACCCTTACCCATGTAGTTGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCATATCCAACATCCTTGATTTAAGGTCTGCCCTTTATACCATAAAAAAATCTCCTTCTGAAACAATCAACCAGTACACCAGCCGCATCAAAGCATTCGTCAACAAAATTGCTGCCACATAA
Coding sequence (CDS)
ATGGCTGCCTCTAGCTCAGAATCCGACTTCACCCCAGTCATCCCAACCTCCACCAAATCATCTCCTTCAAGCAATACCTTTGTCCCTACTTCCACTCTCTTCTTACTATTCAATATTTGCAATCTTGTACCCATTTGTTTAGATTCCACCAATTACATCCTTTGGAAGTATCAAGTCTCTTCTATTCTCAAAGCACACTCTCTTTTTGACCACCTTGATGAATCCCTGCCCTGCCCATCAAAACAGCTTGCCTCACCCACCGCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACTCTCATCAACGCTACATTATCGTTCTCTACCCTTACCCATGTAGTTGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAAACGATACTCCTCCAACACCATATCCAACATCCTTGATTTAAGGTCTGCCCTTTATACCATAAAAAAATCTCCTTCTGAAACAATCAACCAGTACACCAGCCGCATCAAAGCATTCGTCAACAAAATTGCTGCCACATAA
Protein sequence
MAASSSESDFTPVIPTSTKSSPSSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQLASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYSSNTISNILDLRSALYTIKKSPSETINQYTSRIKAFVNKIAAT
Homology
BLAST of PI0019606 vs. ExPASy TrEMBL
Match:
A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 8.6e-62
Identity = 137/185 (74.05%), Postives = 151/185 (81.62%), Query Frame = 0
Query: 1 MAASSSESDFTPVIPTSTKSSP--SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQ 60
MA SS+SD +P ++ P SSN VPTSTLFLL NICNLVPI LDSTNY+LWKYQ
Sbjct: 1 MATPSSQSD----LPGTSNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60
Query: 61 VSSILKAHSLFDHLDESLPCPSKQLASPTADAHPEINPEYLQWLSRDQALITLINATLSF 120
VSSILKAHSLF H+D++LPCP K L S T + EINPEYLQWLSRDQALITLIN TLS
Sbjct: 61 VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSS 120
Query: 121 STLTHVVGSVSSKDLWLSLEKRYSSNTISNILDLRSALYTIKKSPSETINQYTSRIKAFV 180
S L HVV SVSSK LWLSLEKRYSSNT SNILDLRSALYTI K+PSE+I+QYTSRIKA V
Sbjct: 121 SALAHVVSSVSSKALWLSLEKRYSSNTRSNILDLRSALYTINKNPSESIDQYTSRIKALV 180
Query: 181 NKIAA 184
+K+AA
Sbjct: 181 DKLAA 181
BLAST of PI0019606 vs. ExPASy TrEMBL
Match:
A0A5A7T8B0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00680 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 122/161 (75.78%), Postives = 138/161 (85.71%), Query Frame = 0
Query: 23 SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQ 82
SSN +PTSTLFLL +ICNLVPI LDSTNY+LWKYQVSSILKA+S F H+D++LPCP K
Sbjct: 8 SSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLPCPPKH 67
Query: 83 LASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYS 142
L T + +INPEYLQWLS DQALITLIN TLS S L +VVGSVSSK LWLSLEKRYS
Sbjct: 68 LPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSLEKRYS 127
Query: 143 SNTISNILDLRSALYTIKKSPSETINQYTSRIKAFVNKIAA 184
SNT SNILDL SALYT+KK+PSE+I+QYTSRIKAFV+K+AA
Sbjct: 128 SNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAA 168
BLAST of PI0019606 vs. ExPASy TrEMBL
Match:
A0A1S4E4S1 (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 122/161 (75.78%), Postives = 138/161 (85.71%), Query Frame = 0
Query: 23 SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQ 82
SSN +PTSTLFLL +ICNLVPI LDSTNY+LWKYQVSSILKA+S F H+D++LPCP K
Sbjct: 8 SSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLPCPPKH 67
Query: 83 LASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYS 142
L T + +INPEYLQWLS DQALITLIN TLS S L +VVGSVSSK LWLSLEKRYS
Sbjct: 68 LPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSLEKRYS 127
Query: 143 SNTISNILDLRSALYTIKKSPSETINQYTSRIKAFVNKIAA 184
SNT SNILDL SALYT+KK+PSE+I+QYTSRIKAFV+K+AA
Sbjct: 128 SNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAA 168
BLAST of PI0019606 vs. ExPASy TrEMBL
Match:
A0A5D3CH60 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00480 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48
Identity = 112/163 (68.71%), Postives = 121/163 (74.23%), Query Frame = 0
Query: 23 SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQ 82
SSN VPTSTLFLL NICNLVPI LDSTNY+LWKYQVSSILKAHSLF H+D++LPCP K
Sbjct: 49 SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKH 108
Query: 83 LASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYS 142
S T + EINPEY+QWLSRDQALITLINATLS S L HVVGSVSSK LWLSLEKRYS
Sbjct: 109 SPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVGSVSSKALWLSLEKRYS 168
Query: 143 SNTISNILDLRSALYTIKKSPSE----TINQYTSRIKAFVNKI 182
SN SNILDL A +I E T+N + AF I
Sbjct: 169 SNIRSNILDLSIAAASISLEYEEILVHTLNGLPAAFNAFRTSI 211
BLAST of PI0019606 vs. ExPASy TrEMBL
Match:
A0A5A7TVE6 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001030 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 2.7e-47
Identity = 106/155 (68.39%), Postives = 121/155 (78.06%), Query Frame = 0
Query: 28 VPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQLASPT 87
+P S+ + +F NLVP+ LDSTNY+LWKYQVS ILKAH LF H+D+SLPCP K L SP
Sbjct: 888 LPPSSYYPIF--ANLVPLHLDSTNYVLWKYQVSFILKAHFLFGHIDDSLPCPLKFLLSPA 947
Query: 88 ADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYSSNTIS 147
E N EYLQWLS DQALITLINATLS S L HVVGS SSK LW SL+KRYSSN +
Sbjct: 948 VGTTHETNLEYLQWLSLDQALITLINATLSSSALAHVVGSTSSKSLWFSLDKRYSSNNKA 1007
Query: 148 NILDLRSALYTIKKSPSETINQYTSRIKAFVNKIA 183
NILDLRSALYTIKK+ S+TI QYT +IKA V+K+A
Sbjct: 1008 NILDLRSALYTIKKNSSKTIEQYTYQIKALVDKLA 1040
BLAST of PI0019606 vs. NCBI nr
Match:
KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.5 bits (628), Expect = 1.8e-61
Identity = 137/185 (74.05%), Postives = 151/185 (81.62%), Query Frame = 0
Query: 1 MAASSSESDFTPVIPTSTKSSP--SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQ 60
MA SS+SD +P ++ P SSN VPTSTLFLL NICNLVPI LDSTNY+LWKYQ
Sbjct: 1 MATPSSQSD----LPGTSNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60
Query: 61 VSSILKAHSLFDHLDESLPCPSKQLASPTADAHPEINPEYLQWLSRDQALITLINATLSF 120
VSSILKAHSLF H+D++LPCP K L S T + EINPEYLQWLSRDQALITLIN TLS
Sbjct: 61 VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSS 120
Query: 121 STLTHVVGSVSSKDLWLSLEKRYSSNTISNILDLRSALYTIKKSPSETINQYTSRIKAFV 180
S L HVV SVSSK LWLSLEKRYSSNT SNILDLRSALYTI K+PSE+I+QYTSRIKA V
Sbjct: 121 SALAHVVSSVSSKALWLSLEKRYSSNTRSNILDLRSALYTINKNPSESIDQYTSRIKALV 180
Query: 181 NKIAA 184
+K+AA
Sbjct: 181 DKLAA 181
BLAST of PI0019606 vs. NCBI nr
Match:
XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK26994.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.3 bits (599), Expect = 4.1e-58
Identity = 122/161 (75.78%), Postives = 138/161 (85.71%), Query Frame = 0
Query: 23 SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQ 82
SSN +PTSTLFLL +ICNLVPI LDSTNY+LWKYQVSSILKA+S F H+D++LPCP K
Sbjct: 8 SSNPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHIDDTLPCPPKH 67
Query: 83 LASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYS 142
L T + +INPEYLQWLS DQALITLIN TLS S L +VVGSVSSK LWLSLEKRYS
Sbjct: 68 LPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKALWLSLEKRYS 127
Query: 143 SNTISNILDLRSALYTIKKSPSETINQYTSRIKAFVNKIAA 184
SNT SNILDL SALYT+KK+PSE+I+QYTSRIKAFV+K+AA
Sbjct: 128 SNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAA 168
BLAST of PI0019606 vs. NCBI nr
Match:
TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48
Identity = 112/163 (68.71%), Postives = 121/163 (74.23%), Query Frame = 0
Query: 23 SSNTFVPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQ 82
SSN VPTSTLFLL NICNLVPI LDSTNY+LWKYQVSSILKAHSLF H+D++LPCP K
Sbjct: 49 SSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKH 108
Query: 83 LASPTADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYS 142
S T + EINPEY+QWLSRDQALITLINATLS S L HVVGSVSSK LWLSLEKRYS
Sbjct: 109 SPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVGSVSSKALWLSLEKRYS 168
Query: 143 SNTISNILDLRSALYTIKKSPSE----TINQYTSRIKAFVNKI 182
SN SNILDL A +I E T+N + AF I
Sbjct: 169 SNIRSNILDLSIAAASISLEYEEILVHTLNGLPAAFNAFRTSI 211
BLAST of PI0019606 vs. NCBI nr
Match:
TYK03217.1 (uncharacterized protein E5676_scaffold298G00290 [Cucumis melo var. makuwa])
HSP 1 Score: 198.4 bits (503), Expect = 5.5e-47
Identity = 106/155 (68.39%), Postives = 121/155 (78.06%), Query Frame = 0
Query: 28 VPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQLASPT 87
+P S+ + +F NLVP+ LDSTNY+LWKYQVS ILKAH LF H+D+SLPCP K L SP
Sbjct: 888 LPPSSYYPIF--ANLVPLHLDSTNYVLWKYQVSFILKAHFLFGHIDDSLPCPLKFLLSPA 947
Query: 88 ADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYSSNTIS 147
E N EYLQWLS DQALITLINATLS S L HVVGS SSK LW SL+KRYSSN +
Sbjct: 948 VGTTHETNLEYLQWLSLDQALITLINATLSSSALAHVVGSTSSKSLWFSLDKRYSSNNKA 1007
Query: 148 NILDLRSALYTIKKSPSETINQYTSRIKAFVNKIA 183
NILDLRSALYTIKK+ S+TI QYT +IKA V+K+A
Sbjct: 1008 NILDLRSALYTIKKNSSKTIEQYTYQIKALVDKLA 1040
BLAST of PI0019606 vs. NCBI nr
Match:
KAA0046934.1 (uncharacterized protein E6C27_scaffold230G001030 [Cucumis melo var. makuwa])
HSP 1 Score: 198.4 bits (503), Expect = 5.5e-47
Identity = 106/155 (68.39%), Postives = 121/155 (78.06%), Query Frame = 0
Query: 28 VPTSTLFLLFNICNLVPICLDSTNYILWKYQVSSILKAHSLFDHLDESLPCPSKQLASPT 87
+P S+ + +F NLVP+ LDSTNY+LWKYQVS ILKAH LF H+D+SLPCP K L SP
Sbjct: 888 LPPSSYYPIF--ANLVPLHLDSTNYVLWKYQVSFILKAHFLFGHIDDSLPCPLKFLLSPA 947
Query: 88 ADAHPEINPEYLQWLSRDQALITLINATLSFSTLTHVVGSVSSKDLWLSLEKRYSSNTIS 147
E N EYLQWLS DQALITLINATLS S L HVVGS SSK LW SL+KRYSSN +
Sbjct: 948 VGTTHETNLEYLQWLSLDQALITLINATLSSSALAHVVGSTSSKSLWFSLDKRYSSNNKA 1007
Query: 148 NILDLRSALYTIKKSPSETINQYTSRIKAFVNKIA 183
NILDLRSALYTIKK+ S+TI QYT +IKA V+K+A
Sbjct: 1008 NILDLRSALYTIKKNSSKTIEQYTYQIKALVDKLA 1040
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UZE5 | 8.6e-62 | 74.05 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7T8B0 | 2.0e-58 | 75.78 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S4E4S1 | 2.0e-58 | 75.78 | uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=... | [more] |
| A0A5D3CH60 | 4.1e-48 | 68.71 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7TVE6 | 2.7e-47 | 68.39 | Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061282.1 | 1.8e-61 | 74.05 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m... | [more] |
| XP_016902970.1 | 4.1e-58 | 75.78 | PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 ret... | [more] |
| TYK11141.1 | 8.5e-48 | 68.71 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| TYK03217.1 | 5.5e-47 | 68.39 | uncharacterized protein E5676_scaffold298G00290 [Cucumis melo var. makuwa] | [more] |
| KAA0046934.1 | 5.5e-47 | 68.39 | uncharacterized protein E6C27_scaffold230G001030 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
