PI0019598 (gene) Melon (PI 482460) v1

Overview


Name	PI0019598
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	3'(2'),5'-bisphosphate nucleotidase
Location	chr04: 26446095 .. 26447008 (+)
RNA-Seq Expression	PI0019598
Synteny	PI0019598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGGTATTCTTTCTTTGTTTTGTTGTTTTATCGTTGTTCCTTTTCTTATTGTTTGTTGAATGTTACTGTTGATTGTGTTTTGCTTTGACTTTGAAGTGGGAACTGCATGTTATATGTTTATGTGTTTGTTTGGCTTATGGAAAATGTAAGAAAATGAATATATGTAATGTATTTGATACTTTGTTGAGATCAAGAAGACACTGTATAGTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATGATTCTCTGTTTTTGTAATTTAGTTTAACGATTCCTCACGTTGTCCAAAGGGCAAGTGTTTATGATTTTATATTGTTAGGTTTGTGATAGAGACCTTTAATTTTATTTGACTACAGGTTATTGGGGACATTTTTGTCTGTTGTTTATTTTTGCAGTAAATGTGCATGTTCCGTCCAAACATCCTTTTCTTCTGCTATCTTTCATTGTTTATTCTCAGTTCTTTCCTTTTATTATTTGAACTGTTTATCCTTTATAAGTTGTTTATTATCTTCTATATTGATGTATCAGGAAGATGACACACAGACTCTCTCCAAGTCATTTATTGCCTTCTAAGTTGATGTTAAATGTAATTTAAACGTTTTTAGTAAATGTTGAGTTTCTGAAAGTTAAAACGTTTGTAGTGAATGTTGAGTGTTTGAAAGTGATGCCACAGTAATCATGTTGCTTTATGATTCTAGGTAGAAAGTCCCACTTGATTTGTTGATGTATCTAATCGAACACTGTTTAGCAAAAT

mRNA sequence

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGGTATTCTTTCTTTGTTTTGTTGTTTTATCTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATGATTCTCTGTTTTTGTAATTTAGTTTAACGATTCCTCACGTTGTCCAAAGGGCAAGTGTTTATGATTTTATATTGTTAGGTTTGTGATAGAGACCTTTAATTTTATTTGACTACAGGTTATTGGGGACATTTTTGTCTGTTGTTTATTTTTGCAGTAAATGTGCATGTTCCGTCCAAACATCCTTTTCTTCTGCTATCTTTCATTGTTTATTCTCAGTTCTTTCCTTTTATTATTTGAACTGTTTATCCTTTATAAGTTGTTTATTATCTTCTATATTGATGTATCAGGAAGATGACACACAGACTCTCTCCAAGTCATTTATTGCCTTCTAAGTTGATGTTAAATGTAATTTAAACGTTTTTAGTAAATGTTGAGTTTCTGAAAGTTAAAACGTTTGTAGTGAATGTTGAGTGTTTGAAAGTGATGCCACAGTAATCATGTTGCTTTATGATTCTAGGTAGAAAGTCCCACTTGATTTGTTGATGTATCTAATCGAACACTGTTTAGCAAAAT

Coding sequence (CDS)

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGGTATTCTTTCTTTGTTTTGTTGTTTTATCTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATGATTCTCTGTTTTTGTAATTTAGTTTAA

Protein sequence

MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAGILSLFCCFISNAVIVGYRLFSSMILCFCNLV

Homology

[Close]

BLAST of PI0019598 vs. ExPASy Swiss-Prot
Match: Q38945 (PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana OX=3702 GN=AHL PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 9  ELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          E+D AVRVVHLA +LC +VQE L       VK+KDDDSPVT+A
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVA 51

[Close]

BLAST of PI0019598 vs. ExPASy TrEMBL
Match: A0A0A0LDM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851880 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 72/83 (86.75%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAGILSLFCCF 60
          MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA         
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQED---TI 60

Query: 61 ISNAVIVGYRLFSSMILCFCNLV 84
           SNAVIVGYRLFSS+ILCFCNLV
Sbjct: 61 KSNAVIVGYRLFSSIILCFCNLV 80

[Close]

BLAST of PI0019598 vs. ExPASy TrEMBL
Match: A0A5A7SZZ4 (PAP-specific phosphatase HAL2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002040 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTI----AGILSL 60
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTI    A  + +
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAVGTACYMFV 60

Query: 61 FCCFISNAVIVGYRLF 73
          F   + N V + + LF
Sbjct: 61 FVWLMENVVFIHHSLF 76

[Close]

BLAST of PI0019598 vs. ExPASy TrEMBL
Match: A0A1S3BZX2 (3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. ExPASy TrEMBL
Match: A0A6J1CDT6 (3'(2'),5'-bisphosphate nucleotidase OS=Momordica charantia OX=3673 GN=LOC111010569 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELD+AVRVVHLACALCRRVQEGLL  GNAQV AKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQEGLLSAGNAQVMAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. ExPASy TrEMBL
Match: A0A6J1J227 (3'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          ME+GEYSKELD+AVRVVHLACALCRRVQEGLL  GN  VKAKDDDSPVTIA
Sbjct: 1  MENGEYSKELDMAVRVVHLACALCRRVQEGLLLVGNDLVKAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. NCBI nr
Match: KAA0036834.1 (PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95901.1 PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTI----AGILSL 60
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTI    A  + +
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAVGTACYMFV 60

Query: 61 FCCFISNAVIVGYRLF 73
          F   + N V + + LF
Sbjct: 61 FVWLMENVVFIHHSLF 76

[Close]

BLAST of PI0019598 vs. NCBI nr
Match: XP_004150105.1 (PAP-specific phosphatase HAL2-like isoform X1 [Cucumis sativus] >KAE8651309.1 hypothetical protein Csa_002485 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. NCBI nr
Match: XP_008454658.1 (PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. NCBI nr
Match: XP_038897109.1 (PAP-specific phosphatase HAL2-like [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELD+AVRVVHLACALCRRVQ+GLLE GN+Q+KAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQKGLLEAGNSQIKAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. NCBI nr
Match: XP_022139719.1 (PAP-specific phosphatase HAL2-like [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-17
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELD+AVRVVHLACALCRRVQEGLL  GNAQV AKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQEGLLSAGNAQVMAKDDDSPVTIA 51

[Close]

BLAST of PI0019598 vs. TAIR 10
Match: AT5G54390.1 (HAL2-like )

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 9  ELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          E+D AVRVVHLA +LC +VQE L       VK+KDDDSPVT+A
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVA 51

The following BLAST results are available for this feature:

BLAST of PI0019598 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38945	3.4e-07	62.79	PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana OX=3702 GN=AHL PE=2 S...	[more]

BLAST of PI0019598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDM4	1.3e-28	86.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851880 PE=4 SV=1	[more]
A0A5A7SZZ4	6.3e-20	72.37	PAP-specific phosphatase HAL2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BZX2	1.4e-19	98.04	3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3...	[more]
A0A6J1CDT6	2.2e-17	92.16	3'(2'),5'-bisphosphate nucleotidase OS=Momordica charantia OX=3673 GN=LOC1110105...	[more]
A0A6J1J227	1.6e-15	88.24	3'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 ...	[more]

BLAST of PI0019598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036834.1	1.3e-19	72.37	PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95901.1 PAP-sp...	[more]
XP_004150105.1	1.3e-19	100.00	PAP-specific phosphatase HAL2-like isoform X1 [Cucumis sativus] >KAE8651309.1 hy...	[more]
XP_008454658.1	2.9e-19	98.04	PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo]	[more]
XP_038897109.1	2.1e-17	90.20	PAP-specific phosphatase HAL2-like [Benincasa hispida]	[more]
XP_022139719.1	4.6e-17	92.16	PAP-specific phosphatase HAL2-like [Momordica charantia]	[more]

BLAST of PI0019598 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54390.1	2.4e-08	62.79	HAL2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.540.10		coord: 5..56 e-value: 4.8E-10 score: 41.4
None	No IPR available	PANTHER	PTHR43200:SF23	PAP-SPECIFIC PHOSPHATASE HAL2-LIKE	coord: 3..52
None	No IPR available	PANTHER	PTHR43200	PHOSPHATASE	coord: 3..52
None	No IPR available	SUPERFAMILY	56655	Carbohydrate phosphatase	coord: 6..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019598.1	PI0019598.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046855	inositol phosphate dephosphorylation
biological_process	GO:0046854	phosphatidylinositol phosphate biosynthetic process
biological_process	GO:0006790	sulfur compound metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity
molecular_function	GO:0046872	metal ion binding