PI0019577 (gene) Melon (PI 482460) v1

Overview


Name	PI0019577
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Integrase catalytic domain-containing protein
Location	chr04: 17643897 .. 17644399 (+)
RNA-Seq Expression	PI0019577
Synteny	PI0019577

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAACAAAACCAAGGGCGACAAGGTGGTCAAGGTGATCATCATGGGGAAGCATCTGGCTACCACCCGAGACACCATAACAACAGACCACCACATTCCCATCATCAACAACAACACACCACCACTACTCCATCCACATCTTCATCAATGGAAAACCTTCTCTGCCAGTATATGCAGAAGAATGATGTTCTTCGGTAAAGTCAAGCTTCATCAATTCACAATCTGAAGGTACAGTTGGAGCAGCTGGCCAACGATTTCTCCAGAAGGCCACAAGGATCACTCCCTAGCAATACAGAAATGCCTAATCAGGCGGGAGGATCCGAAAAAGAGAAGTGTCAAGCTGTGACACTGCGAAACGGAAGGAATTTGACCATCTGCGACCCTGAAACCGAGCGTAGAAACTCCATTTCTCATTCTACTGCCGAGATTGGCAACACAAGTAACAATTCTAATCCTTTGAATTTTCCTTTAACTAATGATGTTTCTTCCTCGCAGAATAA

mRNA sequence

ATGGGTCAACAAAACCAAGGGCGACAAGGTGGTCAAGGTGATCATCATGGGGAAGCATCTGGCTACCACCCGAGACACCATAACAACAGACCACCACATTCCCATCATCAACAACAACACACCACCACTACTCCATCCACATCTTCATCAATGGAAAACCTTCTCTGCCAGTATATGCAGAAGAATGATGTTCTTCGTCAAGCTTCATCAATTCACAATCTGAAGGTACAGTTGGAGCAGCTGGCCAACGATTTCTCCAGAAGGCCACAAGGATCACTCCCTAGCAATACAGAAATGCCTAATCAGGCGGGAGGATCCGAAAAAGAGAAGTGTCAAGCTGTGACACTGCGAAACGGAAGGAATTTGACCATCTGCGACCCTGAAACCGAGCGTAGAAACTCCATTTCTCATTCTACTGCCGAGATTGGCAACACAAAATAA

Coding sequence (CDS)

ATGGGTCAACAAAACCAAGGGCGACAAGGTGGTCAAGGTGATCATCATGGGGAAGCATCTGGCTACCACCCGAGACACCATAACAACAGACCACCACATTCCCATCATCAACAACAACACACCACCACTACTCCATCCACATCTTCATCAATGGAAAACCTTCTCTGCCAGTATATGCAGAAGAATGATGTTCTTCGTCAAGCTTCATCAATTCACAATCTGAAGGTACAGTTGGAGCAGCTGGCCAACGATTTCTCCAGAAGGCCACAAGGATCACTCCCTAGCAATACAGAAATGCCTAATCAGGCGGGAGGATCCGAAAAAGAGAAGTGTCAAGCTGTGACACTGCGAAACGGAAGGAATTTGACCATCTGCGACCCTGAAACCGAGCGTAGAAACTCCATTTCTCATTCTACTGCCGAGATTGGCAACACAAAATAA

Protein sequence

MGQQNQGRQGGQGDHHGEASGYHPRHHNNRPPHSHHQQQHTTTTPSTSSSMENLLCQYMQKNDVLRQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEKCQAVTLRNGRNLTICDPETERRNSISHSTAEIGNTK

Homology

[Close]

BLAST of PI0019577 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.4e-19
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 53  NLLCQYMQKNDVL--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEK 112
           N +    Q ND L   QASSI NL++QL QL ++ SRRP+GSLPSNTE PNQ GGS KEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 113 CQAVTLRNGRNLTICDPETERRNSISHSTAEIGN 145
           CQ VTLR+ RNLTI +P+ ERRNS S ST +IG+
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGS 111

[Close]

BLAST of PI0019577 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 6   QGRQGGQGDHHGEASGYHPRHHNNRPPHS-HHQQQHTTTTPSTSSSMENLLCQYMQKNDV 65
           Q   GGQG +HG+ASGY  R H +RP HS   QQQ TT TPS SSSME L+  YM++ND 
Sbjct: 11  QNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRNDA 70

Query: 66  L--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEK 109
           L   QA+SI NL++Q+ Q+A DFS RPQ  LPSNTEM NQAG  +K
Sbjct: 71  LLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKK 116

[Close]

BLAST of PI0019577 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 17  GEASGYHPRHHNNRPPH-----SHHQQQHTTTTPSTSSSMENLLCQYMQKNDVL--RQAS 76
           GE SGY PR ++  P       +HH    + ++ S+  SME+L  +YMQ+ND L   QA+
Sbjct: 31  GEVSGYCPRKYHEWPQQPIQHLNHHILNQSHSSSSSLPSMESLFQEYMQRNDALLQSQAA 90

Query: 77  SIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEKCQAVTL 117
           SI NL++Q+ Q+AND SR+P+G+LPSNTE+P Q G S KEKCQAVTL
Sbjct: 91  SIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGKEKCQAVTL 137

[Close]

BLAST of PI0019577 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 48  SSSMENLLCQYMQKNDVL--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGG 107
           +  ME L  +YMQ+ND L   QASSI NL++QL QLAND S RP+G+L  NT+ P Q GG
Sbjct: 45  TKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGG 104

Query: 108 SEKEKCQAVTLRNGRNLTICDPETER 132
           S  +K Q VTLR+ RNLTI + E+E+
Sbjct: 105 SSNKKSQLVTLRSRRNLTIHELESEQ 130

[Close]

BLAST of PI0019577 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 77  QLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEKCQAVTLRNGRNLTICDPETERRNSIS 136
           +L QLA+DF  +P GSLPSNT++P+Q GGS KEKCQAVTLR+ R + I DP  E RNSIS
Sbjct: 106 KLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSER-IFIYDPNPEHRNSIS 165

Query: 137 HSTAE 142
              A+
Sbjct: 166 RPNAK 169

[Close]

BLAST of PI0019577 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-19
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 53  NLLCQYMQKNDVL--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEK 112
           N +    Q ND L   QASSI NL++QL QL ++ SRRP+GSLPSNTE PNQ GGS KEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 113 CQAVTLRNGRNLTICDPETERRNSISHSTAEIGN 145
           CQ VTLR+ RNLTI +P+ ERRNS S ST +IG+
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGS 111

[Close]

BLAST of PI0019577 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-17
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 6   QGRQGGQGDHHGEASGYHPRHHNNRPPHS-HHQQQHTTTTPSTSSSMENLLCQYMQKNDV 65
           Q   GGQG +HG+ASGY  R H +RP HS   QQQ TT TPS SSSME L+  YM++ND 
Sbjct: 11  QNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRNDA 70

Query: 66  L--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGGSEK 109
           L   QA+SI NL++Q+ Q+A DFS RPQ  LPSNTEM NQAG  +K
Sbjct: 71  LLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKK 116

[Close]

BLAST of PI0019577 vs. NCBI nr
Match: WP_217833224.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-14
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 48  SSSMENLLCQYMQKNDVL--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGG 107
           SSSME LL +YMQKND L   QASSI NLK+QL Q+A +F  R +GSLPSNTE P   G 
Sbjct: 1   SSSMEALLKEYMQKNDALMQTQASSIRNLKLQLGQIAGEFKTRQKGSLPSNTEAPRGMGS 60

Query: 108 SEKEKCQAVTLRNGRNL 123
           S KE+CQAVTLR+G+ L
Sbjct: 61  SGKEQCQAVTLRSGKVL 77

[Close]

BLAST of PI0019577 vs. NCBI nr
Match: KGN51008.1 (hypothetical protein Csa_008461 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 48  SSSMENLLCQYMQKNDVL--RQASSIHNLKVQLEQLANDFSRRPQGSLPSNTEMPNQAGG 107
           +  ME L  +YMQ+ND L   QASSI NL++QL QLAND S RP+G+L  NT+ P Q GG
Sbjct: 45  TKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGG 104

Query: 108 SEKEKCQAVTLRNGRNLTICDPETER 132
           S  +K Q VTLR+ RNLTI + E+E+
Sbjct: 105 SSNKKSQLVTLRSRRNLTIHELESEQ 130

[Close]

BLAST of PI0019577 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 77  QLEQLANDFSRRPQGSLPSNTEMPNQAGGSEKEKCQAVTLRNGRNLTICDPETERRNSIS 136
           +L QLA+DF  +P GSLPSNT++P+Q GGS KEKCQAVTLR+ R + I DP  E RNSIS
Sbjct: 106 KLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSER-IFIYDPNPEHRNSIS 165

Query: 137 HSTAE 142
              A+
Sbjct: 166 RPNAK 169

The following BLAST results are available for this feature:

BLAST of PI0019577 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019577 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGS2	2.4e-19	62.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DWD5	1.8e-17	59.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMN3	4.8e-15	51.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1	[more]
A0A0A0KN83	1.3e-12	55.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1	[more]
A0A5A7U2P4	1.6e-10	61.54	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of PI0019577 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041246.1	5.1e-19	62.77	uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK...	[more]
TYK27798.1	3.6e-17	59.43	hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]	[more]
WP_217833224.1	4.9e-14	64.94	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KGN51008.1	2.7e-12	55.81	hypothetical protein Csa_008461 [Cucumis sativus]	[more]
KAA0047821.1	3.3e-10	61.54	uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]	[more]

BLAST of PI0019577 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019577.1	PI0019577.1	mRNA