PI0019321 (gene) Melon (PI 482460) v1

Overview


Name	PI0019321
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr08: 2882126 .. 2882452 (+)
RNA-Seq Expression	PI0019321
Synteny	PI0019321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGTTGGCAGTTGATCTCGACGCAATTAGGAGAGACTCCCTCCTTAGCTGGATGGAAGCACCCAAAGGCACCATGCCTTTCCCCTCCACCATTGAGGCTCTCTATCTGCAGGTTGTGCCATCTTTGGCAGCCAGCCCGCAGACATCCCTTCCTAGAGGTATCTGTAACCAGATGGCCGTTAACCGTATTATAACTCTTCACCAAAATAAAGAAGAGGAAGAAGCTTGCCCAGGCCTGAAGGAAAAAGAAACAACAAGGCGAGGCAATGCTGAAGAGAAAAAGGCCAAACACGATGAATCAAGCTCACGACCAAAGAGATAG

mRNA sequence

ATGAAGAGGTTGGCAGTTGATCTCGACGCAATTAGGAGAGACTCCCTCCTTAGCTGGATGGAAGCACCCAAAGGCACCATGCCTTTCCCCTCCACCATTGAGGCTCTCTATCTGCAGGTTGTGCCATCTTTGGCAGCCAGCCCGCAGACATCCCTTCCTAGAGGTATCTGTAACCAGATGGCCGTTAACCGTATTATAACTCTTCACCAAAATAAAGAAGAGGAAGAAGCTTGCCCAGGCCTGAAGGAAAAAGAAACAACAAGGCGAGGCAATGCTGAAGAGAAAAAGGCCAAACACGATGAATCAAGCTCACGACCAAAGAGATAG

Coding sequence (CDS)

ATGAAGAGGTTGGCAGTTGATCTCGACGCAATTAGGAGAGACTCCCTCCTTAGCTGGATGGAAGCACCCAAAGGCACCATGCCTTTCCCCTCCACCATTGAGGCTCTCTATCTGCAGGTTGTGCCATCTTTGGCAGCCAGCCCGCAGACATCCCTTCCTAGAGGTATCTGTAACCAGATGGCCGTTAACCGTATTATAACTCTTCACCAAAATAAAGAAGAGGAAGAAGCTTGCCCAGGCCTGAAGGAAAAAGAAACAACAAGGCGAGGCAATGCTGAAGAGAAAAAGGCCAAACACGATGAATCAAGCTCACGACCAAAGAGATAG

Protein sequence

MKRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMAVNRIITLHQNKEEEEACPGLKEKETTRRGNAEEKKAKHDESSSRPKR

Homology

[Close]

BLAST of PI0019321 vs. ExPASy TrEMBL
Match: A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 4   LAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMAVN 63
           +A +L AI + ++L+WME PKG   FPS +E LYL+ +PSLA  PQ  +P  + NQ  +N
Sbjct: 136 IAFNLGAIIQGAILAWMEIPKGAKSFPSMMEKLYLKHIPSLAMLPQRKIPSRVYNQTTLN 195

Query: 64  RIITLHQNKEEE 76
           R+IT HQNKEEE
Sbjct: 196 RVITFHQNKEEE 207

[Close]

BLAST of PI0019321 vs. ExPASy TrEMBL
Match: A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 4   LAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMAVN 63
           +A +L AI + ++ +WME PKG   FPS +E LYL+ +PSLA  PQ  +P  + NQ  +N
Sbjct: 136 IAFNLGAIIQGAIFAWMEIPKGAKSFPSMMEKLYLKHIPSLAMLPQRKIPSRVYNQTTLN 195

Query: 64  RIITLHQNKEEE 76
           R+IT HQNKEEE
Sbjct: 196 RVITFHQNKEEE 207

[Close]

BLAST of PI0019321 vs. ExPASy TrEMBL
Match: A0A5A7SLS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00080 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI R+S+LSWM+ P+G MPFPSTIEAL L+ VP L A  Q  +   + +Q  
Sbjct: 8   KKMVVNLGAIIRNSILSWMKTPQGIMPFPSTIEALCLKAVPKLLAFSQAPIFGSVSSQAT 67

Query: 62  VNRIITLHQNKEEEEACPGLKEKETTRRGNAEE-----------KKAKHDESSSRPKR 109
           +N+ ITLHQNKEEE     L +     +G  EE           +K  HD +SS  K+
Sbjct: 68  LNQTITLHQNKEEERHLKTLNKV----KGEEEEASLPPPPSPLKRKKAHDNASSSKKK 121

[Close]

BLAST of PI0019321 vs. ExPASy TrEMBL
Match: A0A5A7U4J2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46449G00010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI ++S+LS M+APK  MPFP TI+AL L+ VP L+   Q  +   +C+Q+ 
Sbjct: 22  KKIVVNLGAIIKNSILSSMKAPKDIMPFPFTIKALCLKEVPELSTFSQAPIFSFVCSQVT 81

Query: 62  VNRIITLHQNKEEEEACPGL-----KEKETTRRGNAEEKKAKHDESSSRPKR 109
           +N+ ITLHQNKEE+     L     +EKE +      ++K  HD +SS  K+
Sbjct: 82  LNQTITLHQNKEEQRCLKTLNKVKGEEKEASPPPPPLKRKKSHDSASSLQKK 133

[Close]

BLAST of PI0019321 vs. ExPASy TrEMBL
Match: A0A5D3E1R7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00150 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI ++S+LS MEAPK  MPFP TI+AL L+ VP L+   Q  +   +C+Q  
Sbjct: 8   KKIVVNLGAIIKNSILSSMEAPKDIMPFPFTIKALCLKEVPELSTFSQAPISSFVCSQAT 67

Query: 62  VNRIITLHQNKEEEEACPGL-----KEKETTRRGNAEEKKAKHDESSSRPKR 109
           +N+ I LHQNKEE+     L     +EKE +      ++K  HD +SS  K+
Sbjct: 68  LNQTIMLHQNKEEQRCLKTLNKVKGEEKEASPPPPPLKRKKSHDSASSLQKK 119

[Close]

BLAST of PI0019321 vs. NCBI nr
Match: TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 4   LAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMAVN 63
           +A +L AI + ++L+WME PKG   FPS +E LYL+ +PSLA  PQ  +P  + NQ  +N
Sbjct: 136 IAFNLGAIIQGAILAWMEIPKGAKSFPSMMEKLYLKHIPSLAMLPQRKIPSRVYNQTTLN 195

Query: 64  RIITLHQNKEEE 76
           R+IT HQNKEEE
Sbjct: 196 RVITFHQNKEEE 207

[Close]

BLAST of PI0019321 vs. NCBI nr
Match: KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 4   LAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMAVN 63
           +A +L AI + ++ +WME PKG   FPS +E LYL+ +PSLA  PQ  +P  + NQ  +N
Sbjct: 136 IAFNLGAIIQGAIFAWMEIPKGAKSFPSMMEKLYLKHIPSLAMLPQRKIPSRVYNQTTLN 195

Query: 64  RIITLHQNKEEE 76
           R+IT HQNKEEE
Sbjct: 196 RVITFHQNKEEE 207

[Close]

BLAST of PI0019321 vs. NCBI nr
Match: KAA0031700.1 (hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa] >TYK04412.1 hypothetical protein E5676_scaffold409G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI R+S+LSWM+ P+G MPFPSTIEAL L+ VP L A  Q  +   + +Q  
Sbjct: 8   KKMVVNLGAIIRNSILSWMKTPQGIMPFPSTIEALCLKAVPKLLAFSQAPIFGSVSSQAT 67

Query: 62  VNRIITLHQNKEEEEACPGLKEKETTRRGNAEE-----------KKAKHDESSSRPKR 109
           +N+ ITLHQNKEEE     L +     +G  EE           +K  HD +SS  K+
Sbjct: 68  LNQTITLHQNKEEERHLKTLNKV----KGEEEEASLPPPPSPLKRKKAHDNASSSKKK 121

[Close]

BLAST of PI0019321 vs. NCBI nr
Match: KAA0050752.1 (hypothetical protein E6C27_scaffold46449G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI ++S+LS M+APK  MPFP TI+AL L+ VP L+   Q  +   +C+Q+ 
Sbjct: 22  KKIVVNLGAIIKNSILSSMKAPKDIMPFPFTIKALCLKEVPELSTFSQAPIFSFVCSQVT 81

Query: 62  VNRIITLHQNKEEEEACPGL-----KEKETTRRGNAEEKKAKHDESSSRPKR 109
           +N+ ITLHQNKEE+     L     +EKE +      ++K  HD +SS  K+
Sbjct: 82  LNQTITLHQNKEEQRCLKTLNKVKGEEKEASPPPPPLKRKKSHDSASSLQKK 133

[Close]

BLAST of PI0019321 vs. NCBI nr
Match: TYK30047.1 (hypothetical protein E5676_scaffold216G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 2   KRLAVDLDAIRRDSLLSWMEAPKGTMPFPSTIEALYLQVVPSLAASPQTSLPRGICNQMA 61
           K++ V+L AI ++S+LS MEAPK  MPFP TI+AL L+ VP L+   Q  +   +C+Q  
Sbjct: 8   KKIVVNLGAIIKNSILSSMEAPKDIMPFPFTIKALCLKEVPELSTFSQAPISSFVCSQAT 67

Query: 62  VNRIITLHQNKEEEEACPGL-----KEKETTRRGNAEEKKAKHDESSSRPKR 109
           +N+ I LHQNKEE+     L     +EKE +      ++K  HD +SS  K+
Sbjct: 68  LNQTIMLHQNKEEQRCLKTLNKVKGEEKEASPPPPPLKRKKSHDSASSLQKK 119

The following BLAST results are available for this feature:

BLAST of PI0019321 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEA4	1.6e-12	52.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFG4	4.8e-12	51.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SLS8	6.2e-12	43.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4J2	1.5e-10	41.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1R7	2.0e-10	41.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0019321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97633.1	3.4e-12	52.78	hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]	[more]
KAA0053237.1	9.9e-12	51.39	hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]	[more]
KAA0031700.1	1.3e-11	43.22	hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0050752.1	3.2e-10	41.96	hypothetical protein E6C27_scaffold46449G00010 [Cucumis melo var. makuwa]	[more]
TYK30047.1	4.1e-10	41.96	hypothetical protein E5676_scaffold216G00150 [Cucumis melo var. makuwa]	[more]

BLAST of PI0019321 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019321.1	PI0019321.1	mRNA