PI0019228 (gene) Melon (PI 482460) v1

Overview


Name	PI0019228
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	glycine-rich protein 2-like
Location	chr01: 5345965 .. 5347117 (-)
RNA-Seq Expression	PI0019228
Synteny	PI0019228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCTTTTTCTCTCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTTCAGTTGTTGGGTTTTCTTTGTGAAAGAAGAAGAGATCGAGAAAATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGGGGCGGCGGCGGTGGCGGAGGTGGAGGTGGTTACTCCAGTGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGAGGTGGTGGTGGATATGGGTTCAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGGGGTTATGGAGGTGGTGGTGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCGTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCACCTTTCTCTCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTTTTTTTTTTTTTTTGTTATCTATGGATTTCCAATCAGTTTAGTATCTGGTTTTACTATCTTTTTGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGTTGATCTATGGAGGAAAGATGAATATCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAA

mRNA sequence

AAAAACCCTTTTTCTCTCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTTCAGTTGTTGGGTTTTCTTTGTGAAAGAAGAAGAGATCGAGAAAATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGGGGCGGCGGCGGTGGCGGAGGTGGAGGTGGTTACTCCAGTGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGAGGTGGTGGTGGATATGGGTTCAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGGGGTTATGGAGGTGGTGGTGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCGTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCACCTTTCTCTCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTTTTTTTTTTTTTTTGTTATCTATGGATTTCCAATCAGTTTAGTATCTGGTTTTACTATCTTTTTGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGTTGATCTATGGAGGAAAGATGAATATCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAA

Coding sequence (CDS)

ATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGGGGCGGCGGCGGTGGCGGAGGTGGAGGTGGTTACTCCAGTGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGAGGTGGTGGTGGATATGGGTTCAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGGGGTTATGGAGGTGGTGGTGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Protein sequence

MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGNCYSCGESGHFARECPSSGR

Homology

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BLAST of PI0019228 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-49
Identity = 149/209 (71.29%), Postives = 161/209 (77.03%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DG
Sbjct: 6   GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R+KAVDVTGP  A+VQG RGGGGGGGG GGGG     GGYGGGG GG    GGG  G+ G
Sbjct: 66  RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY- 181
           G G GG   YGGGGGGYGGGG  GGGG GGG  CFKCGE+GH ARDC QSG  GGG R+ 
Sbjct: 126 GGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFG 185

Query: 182 GGGGGGGGGNCYSCGESGHFARECPSSGR 210
           GGGGGGGGG CY CGE GHFAREC S GR
Sbjct: 186 GGGGGGGGGGCYKCGEDGHFARECTSGGR 214

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BLAST of PI0019228 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.7e-37
Identity = 126/215 (58.60%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA++V+GP  A VQG+ GGGG  GG GG GG       GGG GGG   RGGG Y    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGG-------GGGRGGG---RGGGSY---- 131

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGG 181
                        GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G      GGG
Sbjct: 132 -------------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGG 191

Query: 182 DRYGGGGGGGGG----NCYSCGESGHFARECPSSG 209
            RYG GGGGGGG    +CYSCGESGHFAR+C S G
Sbjct: 192 GRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

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BLAST of PI0019228 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-27
Identity = 129/223 (57.85%), Postives = 144/223 (64.57%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGG----GGGGGGGYSSGGGYGGGGGGGRGRRGGGGY 121
           R KA+DV+GP  A VQG+ GGG  GG    GGG GGG  SGGGYGGGGGG  GR GGG  
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 G---FNGGSGG-------GGRGGYGGGGGGY-GGGGYGGGGGGGGGGACFKCGETGHMAR 181
           G   +  G  G        G GGYGGGGGGY GGGGYGGGGGG GGG             
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG------------- 187

Query: 182 DCYQSGSQGGGDRYGGGGGGGGGNCYSCGESGHFARECPSSGR 210
                         G GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 188 --------------GRGGGGGGGSCYSCGESGHFARDCTSGGR 203

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BLAST of PI0019228 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-16
Identity = 115/216 (53.24%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGG--GGGGGGGGGYSSGGGYGG---GGGGGRGRRGG 123
           KA++VT PG  S+      SRG GG     G  G       GG GG   GGGGGR R GG
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR-RSGG 129

Query: 124 GGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
            G  +  G  G         GGG        GGGGGGG  C+ CGE GH+A+DC + GS 
Sbjct: 130 EGECYMCGDVGHFARDCRQSGGG------NSGGGGGGGRPCYSCGEVGHLAKDC-RGGS- 189

Query: 184 GGGDRYGGGG--GGGGGNCYSCGESGHFARECPSSG 209
            GG+RYGGGG  G GG  CY CG  GHFAR+C  +G
Sbjct: 190 -GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

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BLAST of PI0019228 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 106/212 (50.00%), Postives = 127/212 (59.91%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGGGGG-------GGYSSGGGYGGGGGGGRGR-R 123
           KAV+VT PG  S++    SRG G   GGGG G       G  S   G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG 183
           GG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q  
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQK- 189

Query: 184 SQGGGDRYGGGGGGGGGNCYSCGESGHFAREC 205
           S G GD+ G   GG  G CY+CG+ GHFAR+C
Sbjct: 190 SVGNGDQRGAVKGGNDG-CYTCGDVGHFARDC 213

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BLAST of PI0019228 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.3e-85
Identity = 208/212 (98.11%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGDR 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 Y--GGGGGGGGGNCYSCGESGHFARECPSSGR 210
           Y  GGGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

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BLAST of PI0019228 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.6e-75
Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131
           GEASVQGSR GGGGGGGGGGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGY
Sbjct: 61  GEASVQGSR-GGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGY 120

Query: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGNC 191
           GGGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY  GGGGGGGNC
Sbjct: 121 GGGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNC 180

Query: 192 YSCGESGHFARECPSSGR 210
           YSCGESGHFARECPSSGR
Sbjct: 181 YSCGESGHFARECPSSGR 194

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BLAST of PI0019228 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-71
Identity = 190/213 (89.20%), Postives = 194/213 (91.08%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRG YGG GGG  GGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 ----GGGGGGGGGNCYSCGESGHFARECPSSGR 210
               GGGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 SGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

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BLAST of PI0019228 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-71
Identity = 188/209 (89.95%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRG YGG GGG  GGGY G GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGSYGGSGGGGYGGGY-GSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPSSGR 210
            GGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 SGGGGGGGGNCYSCGESGHFARECPSSGR 202

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BLAST of PI0019228 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.5e-65
Identity = 166/209 (79.43%), Postives = 171/209 (81.82%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GR KA+DVTGPGE+SVQGSRGG                   GGGGGG RG R GGGYGFN
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGG-------------------GGGGGGERGSR-GGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GG GGGGRGGYG GGGGY        GGGGGGG CFKCGETGHMARDCYQ GSQGGGDRY
Sbjct: 121 GG-GGGGRGGYGRGGGGY--------GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRY 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPSSGR 210
           GGGGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 GGGGGGGGGNCYSCGESGHFARDCQSSGR 180

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BLAST of PI0019228 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-84
Identity = 208/212 (98.11%), Postives = 208/212 (98.11%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGDR 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 Y--GGGGGGGGGNCYSCGESGHFARECPSSGR 210
           Y  GGGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of PI0019228 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 304.7 bits (779), Expect = 6.2e-79
Identity = 199/209 (95.22%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGG GGGGG   G    GGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSG----GGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPSSGR 210
            GGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 -GGGGGGGGNCYSCGESGHFARECPSSGR 204

[Close]

BLAST of PI0019228 vs. NCBI nr
Match: XP_008448117.2 (PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 5.5e-75
Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131
           GEASVQGSR GGGGGGGGGGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGY
Sbjct: 61  GEASVQGSR-GGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGY 120

Query: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGNC 191
           GGGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY  GGGGGGGNC
Sbjct: 121 GGGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNC 180

Query: 192 YSCGESGHFARECPSSGR 210
           YSCGESGHFARECPSSGR
Sbjct: 181 YSCGESGHFARECPSSGR 194

[Close]

BLAST of PI0019228 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 188/209 (89.95%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRG YGG GGG  GGGY G GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGSYGGSGGGGYGGGY-GSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPSSGR 210
            GGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 SGGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of PI0019228 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 190/213 (89.20%), Postives = 194/213 (91.08%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRG YGG GGG  GGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 ----GGGGGGGGGNCYSCGESGHFARECPSSGR 210
               GGGGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 SGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of PI0019228 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-38
Identity = 126/215 (58.60%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA++V+GP  A VQG+ GGGG  GG GG GG       GGG GGG   RGGG Y    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGG-------GGGRGGG---RGGGSY---- 131

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGG 181
                        GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G      GGG
Sbjct: 132 -------------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGG 191

Query: 182 DRYGGGGGGGGG----NCYSCGESGHFARECPSSG 209
            RYG GGGGGGG    +CYSCGESGHFAR+C S G
Sbjct: 192 GRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of PI0019228 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 129/223 (57.85%), Postives = 144/223 (64.57%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGG----GGGGGGGYSSGGGYGGGGGGGRGRRGGGGY 121
           R KA+DV+GP  A VQG+ GGG  GG    GGG GGG  SGGGYGGGGGG  GR GGG  
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 G---FNGGSGG-------GGRGGYGGGGGGY-GGGGYGGGGGGGGGGACFKCGETGHMAR 181
           G   +  G  G        G GGYGGGGGGY GGGGYGGGGGG GGG             
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG------------- 187

Query: 182 DCYQSGSQGGGDRYGGGGGGGGGNCYSCGESGHFARECPSSGR 210
                         G GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 188 --------------GRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of PI0019228 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-17
Identity = 115/216 (53.24%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGG--GGGGGGGGGYSSGGGYGG---GGGGGRGRRGG 123
           KA++VT PG  S+      SRG GG     G  G       GG GG   GGGGGR R GG
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR-RSGG 129

Query: 124 GGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
            G  +  G  G         GGG        GGGGGGG  C+ CGE GH+A+DC + GS 
Sbjct: 130 EGECYMCGDVGHFARDCRQSGGG------NSGGGGGGGRPCYSCGEVGHLAKDC-RGGS- 189

Query: 184 GGGDRYGGGG--GGGGGNCYSCGESGHFARECPSSG 209
            GG+RYGGGG  G GG  CY CG  GHFAR+C  +G
Sbjct: 190 -GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of PI0019228 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-13
Identity = 106/212 (50.00%), Postives = 127/212 (59.91%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGGGGG-------GGYSSGGGYGGGGGGGRGR-R 123
           KAV+VT PG  S++    SRG G   GGGG G       G  S   G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG 183
           GG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q  
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQK- 189

Query: 184 SQGGGDRYGGGGGGGGGNCYSCGESGHFAREC 205
           S G GD+ G   GG  G CY+CG+ GHFAR+C
Sbjct: 190 SVGNGDQRGAVKGGNDG-CYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of PI0019228 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	1.1e-49	71.29	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	4.7e-37	58.60	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	1.5e-27	57.85	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	3.5e-16	53.24	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	6.8e-12	50.00	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of PI0019228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M5	6.3e-85	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A1S3BIY4	2.6e-75	97.47	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JLC0	8.8e-71	89.20	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A6J1ERG9	8.8e-71	89.95	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1GLV7	5.5e-65	79.43	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of PI0019228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658593.1	1.3e-84	98.11	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_038888820.1	6.2e-79	95.22	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_008448117.2	5.5e-75	97.47	PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis me...	[more]
XP_022928350.1	1.8e-70	89.95	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_022989065.1	1.8e-70	89.20	glycine-rich protein 2-like [Cucurbita maxima]	[more]

BLAST of PI0019228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	3.3e-38	58.60	glycine-rich protein 2B	[more]
AT4G38680.1	1.1e-28	57.85	glycine rich protein 2	[more]
AT2G17870.1	2.5e-17	53.24	cold shock domain protein 3	[more]
AT4G36020.1	4.8e-13	50.00	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 43..61 score: 40.8 coord: 7..22 score: 63.69 coord: 28..37 score: 64.04
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 1.4E-24 score: 85.7
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.374826
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 5.35554E-26 score: 93.4121
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 154..170 e-value: 1.4E-5 score: 34.5 coord: 190..206 e-value: 2.2E-5 score: 33.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 190..206 e-value: 1.5E-7 score: 31.1 coord: 154..168 e-value: 2.4E-7 score: 30.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 191..206 score: 11.284516
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 155..168 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 6.1E-23 score: 92.2
None	No IPR available	GENE3D	4.10.60.10		coord: 186..209 e-value: 4.1E-7 score: 31.5 coord: 150..179 e-value: 1.9E-7 score: 32.6
None	No IPR available	GENE3D	2.40.50.140		coord: 2..81 e-value: 1.0E-27 score: 98.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..90
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 121..209
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..111
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..111
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 121..209
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 145..207
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019228.1	PI0019228.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding