Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAAGTGCCTTGACTAATTTCTCGGACGTCATAACAATTGGGGAGAGGATCGAATTTGGAGTGAAGAATGGAATTATCACTGATCCTGCTTCAGAGACAAGAAGGATGATGACCCCAAAGAAAAAAGAGGGAAAAGTACACGAGTTAAGCTCGACTCAAAGAGTAGCGACACATGTATCCTCATCAACTGTGGGGTAGACAAATTACTCTCCTAGTTATCAGAATAGAGGTCAAAGCCCATTCAACCAGTCAACTCAGAGAAACACAACGAATAATTGGAAGCAAACTCGTTTCTATCCCATACCTATATCATACACAGAGCTTTTGCCTCAACTTTTAAAGAATCATCAAGTGGCTATTGTACCACAAGAGCCACTACAACCACCATATCCTAAGTGGTATGACCCCAACGCGAAATGTGAATATCATGCTGGAGTAGTTGGGCATTCTACGGAGAACTGTTTTCCTTTAAAGGATAAAGTGCAAAGTCTAGTTAAGGCTGGATGGTTGAAATTCAAGAAGACAAGAGAAGAGCTAGACATCAACCAGAACCCGAATCATGAGGGTCCCACCATAAATGTTGTCGGCACATTCATGGAAAAGTACAAGGATAAGGTGTGTGATCTAACTATTTCAATGAATATGCTTTTCCAAATCCTTCATGGGGCTGGATATTTGTCGCCAAGGTTTAACAGTTATGACGAGAAGAAGTTTGCATGCGCCAGTGGGAAGCAATGTTTATTTCACCCTGAGATAGTTGACCATTCCATTGAGGATTACTTGGAGTTTAAGAGTGAGGTACAAAAGCTGATGGATGCAAAGGTTCTAATGGTAGGACAGATGAGCATGCAAGAAGCCGAGGTTGACATGATTATGGATACTTTTTTCTAG
mRNA sequence
ATGGTTGGAAGTGCCTTGACTAATTTCTCGGACGTCATAACAATTGGGGAGAGGATCGAATTTGGAGTGAAGAATGGAATTATCACTGATCCTGCTTCAGAGACAAGAAGGATGATGACCCCAAAGAAAAAAGAGGGAAAAGTACACGAGTTAAGCTCGACTCAAAGAGTAGCGACACATGTATCCTCATCAACTGTGGGGTTTAACAGTTATGACGAGAAGAAGTTTGCATGCGCCAGTGGGAAGCAATGTTTATTTCACCCTGAGATAGTTGACCATTCCATTGAGGATTACTTGGAGTTTAAGAGTGAGGTACAAAAGCTGATGGATGCAAAGGTTCTAATGGTAGGACAGATGAGCATGCAAGAAGCCGAGGTTGACATGATTATGGATACTTTTTTCTAG
Coding sequence (CDS)
ATGGTTGGAAGTGCCTTGACTAATTTCTCGGACGTCATAACAATTGGGGAGAGGATCGAATTTGGAGTGAAGAATGGAATTATCACTGATCCTGCTTCAGAGACAAGAAGGATGATGACCCCAAAGAAAAAAGAGGGAAAAGTACACGAGTTAAGCTCGACTCAAAGAGTAGCGACACATGTATCCTCATCAACTGTGGGGTTTAACAGTTATGACGAGAAGAAGTTTGCATGCGCCAGTGGGAAGCAATGTTTATTTCACCCTGAGATAGTTGACCATTCCATTGAGGATTACTTGGAGTTTAAGAGTGAGGTACAAAAGCTGATGGATGCAAAGGTTCTAATGGTAGGACAGATGAGCATGCAAGAAGCCGAGGTTGACATGATTATGGATACTTTTTTCTAG
Protein sequence
MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATHVSSSTVGFNSYDEKKFACASGKQCLFHPEIVDHSIEDYLEFKSEVQKLMDAKVLMVGQMSMQEAEVDMIMDTFF
Homology
BLAST of PI0019054 vs. ExPASy TrEMBL
Match:
A0A5A7VBN6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001210 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30
Identity = 100/256 (39.06%), Postives = 112/256 (43.75%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVIT+GE+IEFGVKNG I+DPASE RRMMTPKKKE ++HELSSTQRV H
Sbjct: 194 MVGSASTNFSDVITVGEKIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRV-VH 253
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS TVG
Sbjct: 254 VSSPTVGQTNYSYSYQNGVAIVPQEPLQPPYPKWYDPNVKCEYHAGVVRHSTENCFPLKA 313
Query: 121 ------------------------------------------------------------ 132
Sbjct: 314 KVQSLVKAGWLKFKKTEEESDVNQNPSPKHEGPAINIVDTFTKRYKNKVCDVTTSMNTLF 373
BLAST of PI0019054 vs. ExPASy TrEMBL
Match:
A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 8.5e-27
Identity = 100/295 (33.90%), Postives = 113/295 (38.31%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGERIEFGVKNG I+DPASETRR+MTPKKKEG+VHELSSTQRVAT
Sbjct: 294 MVGSASTNFSDVITIGERIEFGVKNGRISDPASETRRVMTPKKKEGEVHELSSTQRVATR 353
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 354 VSSPIVGQTNFSPSYQNGGQSPFGQSTQRNIRNNWKQTRFDPIPMSYTELLPQLIKSHQV 413
Query: 121 ------------------------------------------------------------ 130
Sbjct: 414 AIVPQEPLQPPYPKWYDPNAKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEE 473
BLAST of PI0019054 vs. ExPASy TrEMBL
Match:
A0A5A7ULI2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00770 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.5e-26
Identity = 103/297 (34.68%), Postives = 114/297 (38.38%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGERIEFGVKNG I+DPASE RRMMTPKKKE ++HELSSTQRV H
Sbjct: 301 MVGSASTNFSDVITIGERIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRV-VH 360
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 361 VSSPIVGQTNYSYSYQNGGKSPFSQATQRNARNSWKQTYFDPIPMSYTELLPQLLKSHQV 420
Query: 121 ------------------------------------------------------------ 132
Sbjct: 421 AIVPQEPLQPPYPKWYDPNVKCEYHAGVVGHSTENCFPLKAKVQSLVKAGWLKFKKIEEE 480
BLAST of PI0019054 vs. ExPASy TrEMBL
Match:
A0A5A7TUT4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001540 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 99/295 (33.56%), Postives = 112/295 (37.97%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVI IGERIEFGVKNG I+DPASETRR+MTPKKKEG+VHELSSTQRVAT
Sbjct: 48 MVGSASTNFSDVIIIGERIEFGVKNGRISDPASETRRVMTPKKKEGEVHELSSTQRVATR 107
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 108 VSSPIVGQTNFSPSYQNGGQSPFGQSTQRNIRNNWKQTRFDPIPMSYTELLPQLIKSHQV 167
Query: 121 ------------------------------------------------------------ 130
Sbjct: 168 AIVPQEPLQPPYPKWYDPNAKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEE 227
BLAST of PI0019054 vs. ExPASy TrEMBL
Match:
A0A5A7T401 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00270 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 97/267 (36.33%), Postives = 111/267 (41.57%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGE IEFGVKNG I DP+SE RRMMTPKKKE ++HELSST++V H
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKV-VH 346
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS TVG
Sbjct: 347 VSSPTVGQKNYSYNYQNGEFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVG 406
Query: 121 ------------------------------------------------------------ 132
Sbjct: 407 HSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKV 466
BLAST of PI0019054 vs. NCBI nr
Match:
KAA0063019.1 (uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa])
HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 100/256 (39.06%), Postives = 112/256 (43.75%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVIT+GE+IEFGVKNG I+DPASE RRMMTPKKKE ++HELSSTQRV H
Sbjct: 194 MVGSASTNFSDVITVGEKIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRV-VH 253
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS TVG
Sbjct: 254 VSSPTVGQTNYSYSYQNGVAIVPQEPLQPPYPKWYDPNVKCEYHAGVVRHSTENCFPLKA 313
Query: 121 ------------------------------------------------------------ 132
Sbjct: 314 KVQSLVKAGWLKFKKTEEESDVNQNPSPKHEGPAINIVDTFTKRYKNKVCDVTTSMNTLF 373
BLAST of PI0019054 vs. NCBI nr
Match:
KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 129.8 bits (325), Expect = 1.8e-26
Identity = 100/295 (33.90%), Postives = 113/295 (38.31%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGERIEFGVKNG I+DPASETRR+MTPKKKEG+VHELSSTQRVAT
Sbjct: 294 MVGSASTNFSDVITIGERIEFGVKNGRISDPASETRRVMTPKKKEGEVHELSSTQRVATR 353
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 354 VSSPIVGQTNFSPSYQNGGQSPFGQSTQRNIRNNWKQTRFDPIPMSYTELLPQLIKSHQV 413
Query: 121 ------------------------------------------------------------ 130
Sbjct: 414 AIVPQEPLQPPYPKWYDPNAKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEE 473
BLAST of PI0019054 vs. NCBI nr
Match:
KAA0055146.1 (uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa])
HSP 1 Score: 128.3 bits (321), Expect = 5.1e-26
Identity = 103/297 (34.68%), Postives = 114/297 (38.38%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGERIEFGVKNG I+DPASE RRMMTPKKKE ++HELSSTQRV H
Sbjct: 301 MVGSASTNFSDVITIGERIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRV-VH 360
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 361 VSSPIVGQTNYSYSYQNGGKSPFSQATQRNARNSWKQTYFDPIPMSYTELLPQLLKSHQV 420
Query: 121 ------------------------------------------------------------ 132
Sbjct: 421 AIVPQEPLQPPYPKWYDPNVKCEYHAGVVGHSTENCFPLKAKVQSLVKAGWLKFKKIEEE 480
BLAST of PI0019054 vs. NCBI nr
Match:
KAA0046608.1 (uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa])
HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 99/295 (33.56%), Postives = 112/295 (37.97%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVI IGERIEFGVKNG I+DPASETRR+MTPKKKEG+VHELSSTQRVAT
Sbjct: 48 MVGSASTNFSDVIIIGERIEFGVKNGRISDPASETRRVMTPKKKEGEVHELSSTQRVATR 107
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS VG
Sbjct: 108 VSSPIVGQTNFSPSYQNGGQSPFGQSTQRNIRNNWKQTRFDPIPMSYTELLPQLIKSHQV 167
Query: 121 ------------------------------------------------------------ 130
Sbjct: 168 AIVPQEPLQPPYPKWYDPNAKCEYHAGAVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEE 227
BLAST of PI0019054 vs. NCBI nr
Match:
XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])
HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 97/267 (36.33%), Postives = 111/267 (41.57%), Query Frame = 0
Query: 1 MVGSALTNFSDVITIGERIEFGVKNGIITDPASETRRMMTPKKKEGKVHELSSTQRVATH 60
MVGSA TNFSDVITIGE IEFGVKNG I DP+SE RRMMTPKKKE ++HELSST++V H
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKV-VH 346
Query: 61 VSSSTVG----------------------------------------------------- 120
VSS TVG
Sbjct: 347 VSSPTVGQKNYSYNYQNGEFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVG 406
Query: 121 ------------------------------------------------------------ 132
Sbjct: 407 HSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKV 466
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VBN6 | 8.2e-30 | 39.06 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7VAU5 | 8.5e-27 | 33.90 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7ULI2 | 2.5e-26 | 34.68 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7TUT4 | 5.5e-26 | 33.56 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7T401 | 7.2e-26 | 36.33 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0063019.1 | 1.7e-29 | 39.06 | uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa] | [more] |
KAA0065293.1 | 1.8e-26 | 33.90 | uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa] | [more] |
KAA0055146.1 | 5.1e-26 | 34.68 | uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa] | [more] |
KAA0046608.1 | 1.1e-25 | 33.56 | uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa] | [more] |
XP_016903339.1 | 1.5e-25 | 36.33 | PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |