PI0018964 (gene) Melon (PI 482460) v1

Overview


Name	PI0018964
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L17
Location	chr08: 23350583 .. 23354311 (-)
RNA-Seq Expression	PI0018964
Synteny	PI0018964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGTTGCAATATATGTAAATTTCTACTGAAGCCCTCCGCTCCCAGACGACCTAACTATTTCTTATCTTGTTATCCATACACCACGAGGACACCCATTCAATGGCAATGGCGATTACAACGGTAACGGCAACGGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCTTCTGTGGGATCAGAAATCTGTACTCGCACTCGAGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCACTTGGCTCAGCAGGTAACTCCATACTCTCTCCCTTGTTACCTAGGTCGCCCCTTTAATTCGATTTTTCTTCCGCTAATGCACGCGCTTATTCTGCTTCTAATGGTCGATTGATTCATGACCTATGAATTGAATGGTTCTGCAATTATTTACTATTTATTTTATTTGTTTAAATTTTGATTTCTATTTGAAGCGATACGTCCCTTTTAGGCTTTTTCTCGGCAGCCTTCTGGTACAAATACTGTACAAGCCTCCTGCTAATTTTGGTAACAATTGGAAATCTTAAGTTAATGTTCGCGCGAAGTGAAACGTTGTTCCCCGTTTTGTTTCACACCTATTGAATAACAATCGGAGAGAAAACGTGAAAATCTTTCTTTCAGGGGGGTTTGTTTGTCTTCCTCAGACTCTGTTATCGAAAATTAGGTTTACAAACACTCCCCCATTTCTAACTTTTTTGCCTTTTAGTTTATGTATTGGTACAATTTCAAAAACCAAGTTAAAATTTAAAAAATTTTAAAACTAAAAAGAATGTAGTTTCTGAAAACTTTGTTTTTTTTTTTTTTTTTTTAAAATTTGCAAGTGGATGACGGGTTTTACTTGGTCCGTCACAGTTTAGAATTCTTTGAAATGGTTTTGTTTGCGTCTTTCTTAAACTCGATTTGTAACTATTTAATTCTTAGTTTTTTAAATTAAGCGTATGGAATTTACTGCTTTCTAGTTTTTTTATATCCGTGAGTGTTAGGGTCAGTTTACACATGCCTCGATTAATCTTATGGGACAACCCGTCTGACACTACAACATTAGGGTGCTAGGAAAAATTGGTAGAAAATTAACATGTAGGTAAGTGGTCACCATGGATTGAATCCATGACTTCTTAGTTATTGATATTATGTCTCATTTTTTACTACATTTTAGTTTACATTTTACCAATGTTTAAATTTTGGAAACTAAAAAAGATAGCTCTGCTTGTTAACCATTTCGTTTTTGAAAATTAAGCCTATAGATACTACGTCCACCTCCAACTTTCTTTATTTGTTTGTTTGTTGTTCAGTGAAATGTTTCTTATCTAAAAAAATGTAGTTTTTGCTTTTAGAGTTTGACTAGGAATTCAACTATTCTATTTAAGAAAAATGCAAATTATTGTAAGACATAAAGAGAAATTAGGCTTATGGGGCCGTAGTTTTTAAAAACTTTGTTTTTGTTTTTGGAATTTATCGAAGAATACAACTATTATACTTAAATATGATGCAAATCATCCTAAGAAACTAGGAAGGATACTAGGAAGAAATAGACTTGATTTACAAGGACCAAATAAAAAAAAAAATAGTGTCTAGAGCCTAATTTTTAAAAAAGAGTTACAAAATGGGCCATGTTTACAGGATTTGGTTGATGTTTTGATTGTATTTCTAGACAATAAGCCCATTAAAGTTGGTGCATTTTCAGGATTTCTATCATTAAGAAAGTTAATATAAAATGGAAGAAAATAGAAATGCTTAGAATAGTAGGAAGTTCAAATGAATTCAAATTATTTCACTATATATGACTGAGTATAAATAATACACTAGGGGATGGGGAAAATATTGACTACCTTATAAGAGAGGGCCATGTGGTACGACAAATAAAAAACAATAACAAGTGTAAAAAATCAAACAATTCAATTCGCAAGTTAATATATTTCCATCCCTGCTGCATTCTGTATGTGAAATTCTTGTCAACTACAGGATTGGACTGACTGGGTTTACATGGCCCGTCATAGTTCGTAATTATTTCAAAGGGGTTCCGTTTGTGGCTTCATGGGCACCTTTACATTTAGTATCTGGTTGATGTTTTGATTGTTTTCCTAGGCCTGAAACGTGATAAATAAATATGCCTATTGAAGTTGGTGTATTTTCAGGGTTTCTATCATTAAGAGTGTGTGAACTTACAATGGAACAAAGAAAGGGATGAAATAGGAATGTTTTGAATAGTATAAAGCTCAAATGAATTATTTCATTCGATAAGGCTGAGTGAGTATAAATAATACACAAGGGGATGCGGAGAATATTACCCACCTTATGAGAGAGAGCCACAAATCAGAAAACAGTAATAAATATAACAAATCAAACAACACCATTTTCAGGTGAATTCAAATGTTTTTCGGGTACCATTTTACGTTGTTCCATTACCATATTCAGACATGAATTGAACCCTGGGCTCTTGGGCATCGTAATTTTATTCTCAACACATTGCGTCTAAATTACCGAGTGGTCAATATCATGTATTGCTTAGTACTAGGTGGATACAAACCTTTCATATCAGATTAAAGTATTGCGGGCATGATATAAATGCTCTAGCATATTGGTCTCATAGAGTTTGTTATACTTTCACATATCCATTAATGAGGTAAGTTAACGTTTCAACATTAAATTTCTAGTTAATATGAATTTCTAGATGCATTTGTTATACAAATGGCCCGATGCATTTGCGGCTCTGAATGTCAAGCCTTAGTGGCTCAGGATTGTAGAAGTTTATTCGCGTTTGAATATTGTAGAGAGTTAGGACGTTAGCTTGTAAGATTAGATGATGTGTGCCATATAATGAAAATGATATTTTGTCGGTATATAAATCTCATCAAATAACAACAGTTTTTTAAAAATCATAAACTAATAGCGCATAGAATTCCTGAGATTTATACAACTTTCTGTAATTTCTTTTGTGTACTAATTGTTATAGAACCTGTGATGCGCGTGTCCATCATGCAGATTACAATGGCTTTGAACATAACTTTAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCGCTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGACAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTCGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAATGGTGTGGAGATTTAATCCTTTTTGAGAGGTTGCCACATGTATGATTATAAACCTTGTATTAATATTTTAAGTCAATTTGATCTACATTTTCTGGGGCTTAACTTCTTTTCCCATTCAAACTAATATACACTAGTGGTCGGCTTGGAGGCTCGAGATGACCTTCTACGTTTTAACCTCATCAATGATTCAATATTATCCTCTCTGCACTCTTTGTCGTT

mRNA sequence

AAAAAAGTTGCAATATATGTAAATTTCTACTGAAGCCCTCCGCTCCCAGACGACCTAACTATTTCTTATCTTGTTATCCATACACCACGAGGACACCCATTCAATGGCAATGGCGATTACAACGGTAACGGCAACGGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCTTCTGTGGGATCAGAAATCTGTACTCGCACTCGAGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCACTTGGCTCAGCAGATTACAATGGCTTTGAACATAACTTTAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCGCTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGACAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTCGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAATGGTGTGGAGATTTAATCCTTTTTGAGAGGTTGCCACATGTATGATTATAAACCTTGTATTAATATTTTAAGTCAATTTGATCTACATTTTCTGGGGCTTAACTTCTTTTCCCATTCAAACTAATATACACTAGTGGTCGGCTTGGAGGCTCGAGATGACCTTCTACGTTTTAACCTCATCAATGATTCAATATTATCCTCTCTGCACTCTTTGTCGTT

Coding sequence (CDS)

ATGGCAATGGCGATTACAACGGTAACGGCAACGGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCTTCTGTGGGATCAGAAATCTGTACTCGCACTCGAGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCACTTGGCTCAGCAGATTACAATGGCTTTGAACATAACTTTAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCGCTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGACAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTCGTCTGA

Protein sequence

MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFSGLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

Homology

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BLAST of PI0018964 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.1e-77
Identity = 152/214 (71.03%), Postives = 174/214 (81.31%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNAR---VSRRTCSKP-I 60
           M+MA+ T T + +  WS ++L+SALPS  S       +  P S++R     R   S P +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S+G  D+  FE+ FKIVD G R++AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

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BLAST of PI0018964 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-75
Identity = 146/204 (71.57%), Postives = 168/204 (82.35%), Query Frame = 0


Query: 10  ATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARV---SRRTCSKPIASFSGLCPLN 69
           A+A+  WS + L+SALPS+     +  R S   S +R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 70  PLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 129
           PL+SL S D   FEH+F ++DNG RVFAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 130 RIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 189
           RIKTT+ RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 190 GYTRIIRTLPRRGDNAPMAYIELV 211
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

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BLAST of PI0018964 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-57
Identity = 108/126 (85.71%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 85  IVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDK 144
           ++DNG R FAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 145 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 204
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 205 AYIELV 211
           AYIELV
Sbjct: 121 AYIELV 126

[Close]

BLAST of PI0018964 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 154
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]

BLAST of PI0018964 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-40
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 154
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 210
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

[Close]

BLAST of PI0018964 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110
Identity = 205/210 (97.62%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITT TATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GSADYNGFEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of PI0018964 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 6.9e-108
Identity = 205/210 (97.62%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATANGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GSADYN FEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of PI0018964 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.7e-96
Identity = 183/210 (87.14%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAITT TATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS+GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of PI0018964 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.9e-95
Identity = 181/210 (86.19%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAITT TATAN RWSF+++RSALP V   + T +RVSFP SN R S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS+GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of PI0018964 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 179/210 (85.24%), Postives = 187/210 (89.05%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMA T  TA  N RWS T LR+ALPSVG EI T  RVSFP +  RVS RTCSKPIASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of PI0018964 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109
Identity = 205/210 (97.62%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITT TATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GSADYNGFEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of PI0018964 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107
Identity = 205/210 (97.62%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATANGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GSADYN FEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of PI0018964 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 197/210 (93.81%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATANGRWSFTTLRSALPSV SEICT +RVSFPLSN RV+ RTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G  DYNGFEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of PI0018964 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 5.6e-96
Identity = 183/210 (87.14%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAITT TATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS+GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of PI0018964 vs. NCBI nr
Match: XP_023540903.1 (50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.6 bits (919), Expect = 3.7e-95
Identity = 181/210 (86.19%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAITT TATAN RWSF+++RSALPSV   + T +RVSFP SN R S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS+GS+DYN +E NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSYEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of PI0018964 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 288.5 bits (737), Expect = 4.3e-78
Identity = 152/214 (71.03%), Postives = 174/214 (81.31%), Query Frame = 0


Query: 1   MAMAITTVTATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNAR---VSRRTCSKP-I 60
           M+MA+ T T + +  WS ++L+SALPS  S       +  P S++R     R   S P +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISLGSADYNGFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S+G  D+  FE+ FKIVD G R++AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of PI0018964 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL+KH RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of PI0018964 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-23
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL++H RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of PI0018964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	6.1e-77	71.03	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	1.1e-75	71.57	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	1.4e-57	85.71	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	1.2e-40	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	3.5e-40	71.30	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of PI0018964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9N9	5.7e-110	97.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A1S3B652	6.9e-108	97.62	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A6J1I1G7	2.7e-96	87.14	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GDC0	3.9e-95	86.19	50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DXR7	1.1e-92	85.24	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of PI0018964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137669.1	1.2e-109	97.62	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_008442307.1	1.4e-107	97.62	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]
XP_038906261.1	4.8e-103	93.81	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_022971252.1	5.6e-96	87.14	50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri...	[more]
XP_023540903.1	3.7e-95	86.19	50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0018964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	4.3e-78	71.03	Ribosomal protein L17 family protein	[more]
AT5G09770.1	6.1e-24	49.07	Ribosomal protein L17 family protein	[more]
AT5G64650.1	3.0e-23	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 114..210 e-value: 1.7E-34 score: 118.6
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 101..210 e-value: 8.0E-43 score: 143.3
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 46..210
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 99..210 score: 26.132162
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 85..210 e-value: 1.4E-50 score: 172.5
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 95..210
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 46..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018964.1	PI0018964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome