PI0018720 (gene) Melon (PI 482460) v1

Overview
NamePI0018720
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr08: 5100426 .. 5100947 (+)
RNA-Seq ExpressionPI0018720
SyntenyPI0018720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG

mRNA sequence

ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG

Coding sequence (CDS)

ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG

Protein sequence

MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
Homology
BLAST of PI0018720 vs. ExPASy TrEMBL
Match: A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. ExPASy TrEMBL
Match: A0A5A7SW95 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001980 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 151/173 (87.28%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILARQKL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARQKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. NCBI nr
Match: KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.8e-82
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. NCBI nr
Match: KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 314.7 bits (805), Expect = 5.0e-82
Identity = 151/173 (87.28%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILARQKL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARQKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. NCBI nr
Match: TYK18566.1 (uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

BLAST of PI0018720 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0

Query: 1   MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
           MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205

Query: 61  MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
           MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265

Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
           IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UIP71.8e-8287.28Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7SW952.4e-8287.28Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3C4R17.0e-8286.71Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3BRZ67.0e-8286.71Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3DQ207.0e-8286.71Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
KAA0053339.13.8e-8287.28reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0035532.15.0e-8287.28uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa][more]
TYK18566.11.4e-8186.71uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa][more]
KAA0037220.11.4e-8186.71reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... [more]
KAA0063412.11.4e-8186.71reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 58..150
e-value: 2.1E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR34482:SF18RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATEDcoord: 13..170
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 13..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018720.1PI0018720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding