Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG
mRNA sequence
ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG
Coding sequence (CDS)
ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAGAAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTTTTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG
Protein sequence
MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
Homology
BLAST of PI0018720 vs. ExPASy TrEMBL
Match:
A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)
HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. ExPASy TrEMBL
Match:
A0A5A7SW95 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001980 PE=4 SV=1)
HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 151/173 (87.28%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILARQKL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARQKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. ExPASy TrEMBL
Match:
A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)
HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. ExPASy TrEMBL
Match:
A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)
HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. ExPASy TrEMBL
Match:
A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)
HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. NCBI nr
Match:
KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 315.1 bits (806), Expect = 3.8e-82
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. NCBI nr
Match:
KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])
HSP 1 Score: 314.7 bits (805), Expect = 5.0e-82
Identity = 151/173 (87.28%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILARQKL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARQKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. NCBI nr
Match:
TYK18566.1 (uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa])
HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. NCBI nr
Match:
KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
BLAST of PI0018720 vs. NCBI nr
Match:
KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 0
Query: 1 MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLAT 60
MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR NTV EEAKVTLAT
Sbjct: 146 MANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKVTLAT 205
Query: 61 MHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQKLHELKHTGS 120
MHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFFPENVEILAR+KL ELKHTGS
Sbjct: 206 MHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGS 265
Query: 121 IRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA 174
IR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Sbjct: 266 IREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAA 318
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UIP7 | 1.8e-82 | 87.28 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
A0A5A7SW95 | 2.4e-82 | 87.28 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3C4R1 | 7.0e-82 | 86.71 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5D3BRZ6 | 7.0e-82 | 86.71 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5D3DQ20 | 7.0e-82 | 86.71 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0053339.1 | 3.8e-82 | 87.28 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0035532.1 | 5.0e-82 | 87.28 | uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa] | [more] |
TYK18566.1 | 1.4e-81 | 86.71 | uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa] | [more] |
KAA0037220.1 | 1.4e-81 | 86.71 | reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... | [more] |
KAA0063412.1 | 1.4e-81 | 86.71 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |