PI0018691 (gene) Melon (PI 482460) v1

Overview


Name	PI0018691
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CYSTM domain-containing protein
Location	chr08: 20749472 .. 20750126 (+)
RNA-Seq Expression	PI0018691
Synteny	PI0018691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAGTTCGGCAGTTCCATTGTTGGGTTAAAACTCAAAACAAACATTAAACTTTCCTTCATCACCACTCGGCTATGCATAACTCACACGTTTATTCTGGATTCGGCAAAAATGGCTACTTGTCATCAACACTTCAATCTGCTAAGCCACGTTGGCAACAACAAACAACCATAAAAACTCTCTTTCTAATTCAAACGAACACAAATCCAAAGGCTAATATCATATAAAATCTGCTCTGGGTTTTGATTGATCTGCATGCAGTAAAAGATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGTCGCCGCCTCCAGTGGTGGCGCCACCACAATATGCAGCCGCTCCTCTCCAGGGAGCCGGATGCCTGGAGGCTTGGTAATTTCAATAATCTAATCCCCAACCTCATGATTATAACAACCTAATATTTTCTCTCTATCTTATTTCTCAGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAGTGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAGTTAACCATACTCCGTTTTGTTTCAAATTTTATTATTATGTAAGGCACAAATTTAGTGTATGTAGGACTAGATGTGACAATTTTATATAATAATGTTGGAGGTTTTC

mRNA sequence

TCCAGTTCGGCAGTTCCATTGTTGGGTTAAAACTCAAAACAAACATTAAACTTTCCTTCATCACCACTCGGCTATGCATAACTCACACGTTTATTCTGGATTCGGCAAAAATGGCTACTTGTCATCAACACTTCAATCTGCTAAGCCACGTTGGCAACAACAAACAACCATAAAAACTCTCTTTCTAATTCAAACGAACACAAATCCAAAGGCTAATATCATATAAAATCTGCTCTGGGTTTTGATTGATCTGCATGCAGTAAAAGATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGTCGCCGCCTCCAGTGGTGGCGCCACCACAATATGCAGCCGCTCCTCTCCAGGGAGCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAGTGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAGTTAACCATACTCCGTTTTGTTTCAAATTTTATTATTATGTAAGGCACAAATTTAGTGTATGTAGGACTAGATGTGACAATTTTATATAATAATGTTGGAGGTTTTC

Coding sequence (CDS)

ATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGTCGCCGCCTCCAGTGGTGGCGCCACCACAATATGCAGCCGCTCCTCTCCAGGGAGCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAGTGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAG

Protein sequence

MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWCCDPWCLFAY

Homology

[Close]

BLAST of PI0018691 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 29/54 (53.70%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 6  YAYPYYGEGYYQGPSPPPVVAPPQYAAAP--LQGAGCLEACLAALCCCCLVDQC 58
          Y  P Y +GY     P     PPQY+ AP   Q AG LE CLAALCCCCL+D C
Sbjct: 33 YPPPGYAQGY-----PAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLLDAC 81

[Close]

BLAST of PI0018691 vs. ExPASy TrEMBL
Match: A0A0A0KGL9 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497280 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-30
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGP PPPVVAPPQYAAAP QG GCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFA 69
          CDPWCLFA
Sbjct: 61 CDPWCLFA 68

[Close]

BLAST of PI0018691 vs. ExPASy TrEMBL
Match: U5D7A4 (CYSTM domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00046p00231970 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQG   PPV+APPQYAA P + AG LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]

BLAST of PI0018691 vs. ExPASy TrEMBL
Match: A0A061DHF5 (CYSTM domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_000918 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAA-APLQGAGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPV+APPQYAA  P +G G LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of PI0018691 vs. ExPASy TrEMBL
Match: A0A6A4NX12 (Putative cysteine-rich transmembrane CYSTM domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr16g0381471 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAA-APLQGAGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPV+APPQYAA  P + AG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAAPPPRRQAGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of PI0018691 vs. ExPASy TrEMBL
Match: M0TDW2 (CYSTM domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAA-APLQGAGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPV+APPQYAA  P + AG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAAPPPRRQAGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of PI0018691 vs. NCBI nr
Match: KGN48678.1 (hypothetical protein Csa_004171 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGP PPPVVAPPQYAAAP QG GCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFA 69
          CDPWCLFA
Sbjct: 61 CDPWCLFA 68

[Close]

BLAST of PI0018691 vs. NCBI nr
Match: KAG6594919.1 (hypothetical protein SDJN03_11472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2  SQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWCC 61
          S  KYAYPYY  GYYQGP PPPVVAPP YAAAP QG GCLEACLAALCCCCLVDQCCWCC
Sbjct: 6  SHSKYAYPYYSGGYYQGP-PPPVVAPPHYAAAPPQGPGCLEACLAALCCCCLVDQCCWCC 65

Query: 62 DPWCLFAY 70
          DP+ LFA+
Sbjct: 66 DPFWLFAF 72

[Close]

BLAST of PI0018691 vs. NCBI nr
Match: XP_020530606.1 (uncharacterized protein LOC110008298 [Amborella trichopoda])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQG   PPV+APPQYAA P + AG LE CLAALCCCCL+D+C  C
Sbjct: 85  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 144

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 145 CDPSIIF 146

[Close]

BLAST of PI0018691 vs. NCBI nr
Match: ERN18100.1 (hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQGAGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQG   PPV+APPQYAA P + AG LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]

BLAST of PI0018691 vs. NCBI nr
Match: OIV93017.1 (hypothetical protein TanjilG_20679 [Lupinus angustifolius])

HSP 1 Score: 80.1 bits (196), Expect = 8.2e-12
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQYAAAPLQG-AGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPV+APPQYAA P  G AG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAAPPPGGQAGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of PI0018691 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 38/72 (52.78%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPSPPPVVAPPQY---------AAAPLQGAGCLEACLAALCCC 60
          MS  KYAYPY   G Y    PPPV  PPQY            P +  G LE  LAALCCC
Sbjct: 1  MSDPKYAYPYPAPGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCCC 60

Query: 61 CLVDQCCWCCDP 64
          CLVD+C  CCDP
Sbjct: 61 CLVDEC--CCDP 70

[Close]

BLAST of PI0018691 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05
Identity = 29/54 (53.70%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 6  YAYPYYGEGYYQGPSPPPVVAPPQYAAAP--LQGAGCLEACLAALCCCCLVDQC 58
          Y  P Y +GY     P     PPQY+ AP   Q AG LE CLAALCCCCL+D C
Sbjct: 33 YPPPGYAQGY-----PAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLLDAC 81

The following BLAST results are available for this feature:

BLAST of PI0018691 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJW3	2.3e-04	53.70	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]

BLAST of PI0018691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGL9	2.5e-30	95.59	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497280 PE=3 ...	[more]
U5D7A4	6.2e-13	67.16	CYSTM domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00046p...	[more]
A0A061DHF5	5.2e-12	66.18	CYSTM domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_000918 PE=3 SV...	[more]
A0A6A4NX12	1.2e-11	66.18	Putative cysteine-rich transmembrane CYSTM domain-containing protein OS=Lupinus ...	[more]
M0TDW2	1.2e-11	66.18	CYSTM domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 P...	[more]

BLAST of PI0018691 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48678.1	5.1e-30	95.59	hypothetical protein Csa_004171 [Cucumis sativus]	[more]
KAG6594919.1	1.4e-22	83.82	hypothetical protein SDJN03_11472, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_020530606.1	1.3e-12	67.16	uncharacterized protein LOC110008298 [Amborella trichopoda]	[more]
ERN18100.1	1.3e-12	67.16	hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]	[more]
OIV93017.1	8.2e-12	67.65	hypothetical protein TanjilG_20679 [Lupinus angustifolius]	[more]

BLAST of PI0018691 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33660.1	1.1e-09	52.78	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G67600.1	1.6e-05	53.70	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 14..58 e-value: 1.9E-8 score: 34.4
None	No IPR available	PANTHER	PTHR31568:SF105	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKE	coord: 1..67
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018691.1	PI0018691.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane