PI0018674 (gene) Melon (PI 482460) v1

Overview


Name	PI0018674
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr04: 26900629 .. 26901591 (+)
RNA-Seq Expression	PI0018674
Synteny	PI0018674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAAACTAAGACATGCAAATGATCATCTACTACTTGGACGAGCACACGATTCACGGTATGCTATTTTATTTTAATTTAGATCAAATAGTAGTTTTAATACTAAATGAGTGATATAATTAATTCAAAACCTAAAATATTGTTGAGCATTCCTCCTCTATCAAATATTAGTTTATTAATACAGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATGTAGTTAGTCAATATAGGTACATGTTTTATCTTCTTCAGTGTGATCAGATACATCAATATTAAAACTTGAATTTTTTTATACATCAGTATGCATATATTTAGTGATTTTTAATGTAATGTGTGATATTTTAGATTATTTGAGAGTCTTACAAAAATGTAATTCATAATTTACCCAATTTCAGTAAGAATGGTCAACATATATGGCAGACCATCTCATATGTTTTCATATTAGTGAGTTGCATTATCCATTAGAAAATTCGGTTTTAAACAAGATGTTCCATCAGAATGCAATACTAAACCACTCCTGCACAATATTGACTTGAGAGCCACGGATTGGTCAGACAAGGTTGCACATTTGGTAGTGCGATGACAATCTCGTAGAAGATTTATTATCAATGGAGCTTCGATTCAGCAATTTGATCGGGATGTGACTCAAGAATACATCCACTAGTATAATAATATTACGAGGCTCTACATCACTCGATCGGGAGCAGCTGTGGGTCATCTTGTACGTATTTAAATATTGAATAATTATTTTAAATTATTTACTCAATTAACTATTCTCTAATTTTTTACAATTCACAGAGATCGAACAACAGAAGACTTCGTGAAGTTGTAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCCGTTAACAGGGGACGTGTTTGA

mRNA sequence

ATGGCTCCAAAACTAAGACATGCAAATGATCATCTACTACTTGGACGAGCACACGATTCACGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATAGATCGAACAACAGAAGACTTCGTGAAGTTGTAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCCGTTAACAGGGGACGTGTTTGA

Coding sequence (CDS)

ATGGCTCCAAAACTAAGACATGCAAATGATCATCTACTACTTGGACGAGCACACGATTCACGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATAGATCGAACAACAGAAGACTTCGTGAAGTTGTAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCCGTTAACAGGGGACGTGTTTGA

Protein sequence

MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNERYMEEIHYMYDVPIVPPPVNRGRV

Homology

[Close]

BLAST of PI0018674 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-19
Identity = 65/171 (38.01%), Postives = 74/171 (43.27%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATH-------------------------- 60
           +AP+L HAN+HLL GRA  SRW+DQFCVTR ATH                          
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

[Close]

BLAST of PI0018674 vs. ExPASy TrEMBL
Match: A0A5D3BTN9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00320 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNER 60
           +AP+L HANDHLL GRA  S              RSNN RLR+V +DPQQVLDICNNNER
Sbjct: 326 IAPQLTHANDHLLPGRALGS--------------RSNNARLRDVANDPQQVLDICNNNER 385

Query: 61  YMEEIHYMYDVPIVPPPVNRGRV 84
           YMEEIH MYD+PIVPP  +RG V
Sbjct: 386 YMEEIHNMYDLPIVPPLAHRGCV 394

[Close]

BLAST of PI0018674 vs. ExPASy TrEMBL
Match: A0A5A7V745 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001310 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNER 60
           +AP+L HANDHLL GRA  S              RSNN RLR+V +DPQQVLDICNNNER
Sbjct: 326 IAPQLTHANDHLLPGRALGS--------------RSNNARLRDVANDPQQVLDICNNNER 385

Query: 61  YMEEIHYMYDVPIVPPPVNRGRV 84
           YMEEIH MYD+PIVPP  +RG V
Sbjct: 386 YMEEIHNMYDLPIVPPLAHRGCV 394

[Close]

BLAST of PI0018674 vs. ExPASy TrEMBL
Match: A0A5A7VBU8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001370 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 28 VTRSATHRSNNRRLREVVDDPQQVLDICNNNERYMEEIHYMYDVPIVPPPVNRGRV 84
          +TR    RSNN +LR+V DDPQQVLDICNNNERY+EEIH MYD+PIVPPPV+RGRV
Sbjct: 19 ITRPGAARSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRV 74

[Close]

BLAST of PI0018674 vs. ExPASy TrEMBL
Match: A0A5A7VEC1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001470 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 18  HDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNERYMEEIHYMYDVPIVPPP 77
           H  R   QF + ++   RSNN RLR+V DDPQQVLDICNNNERYMEEIH MYD+PIVP P
Sbjct: 49  HPDRVLRQFGLKQNIPSRSNNARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIVPLP 108

Query: 78  VNRGRV 84
           ++RGR+
Sbjct: 109 IHRGRI 114

[Close]

BLAST of PI0018674 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 65/171 (38.01%), Postives = 74/171 (43.27%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATH-------------------------- 60
           +AP+L HAN+HLL GRA  SRW+DQFCVTR ATH                          
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

[Close]

BLAST of PI0018674 vs. NCBI nr
Match: TYK02837.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNER 60
           +AP+L HANDHLL GRA  S              RSNN RLR+V +DPQQVLDICNNNER
Sbjct: 326 IAPQLTHANDHLLPGRALGS--------------RSNNARLRDVANDPQQVLDICNNNER 385

Query: 61  YMEEIHYMYDVPIVPPPVNRGRV 84
           YMEEIH MYD+PIVPP  +RG V
Sbjct: 386 YMEEIHNMYDLPIVPPLAHRGCV 394

[Close]

BLAST of PI0018674 vs. NCBI nr
Match: KAA0064192.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MAPKLRHANDHLLLGRAHDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNER 60
           +AP+L HANDHLL GRA  S              RSNN RLR+V +DPQQVLDICNNNER
Sbjct: 326 IAPQLTHANDHLLPGRALGS--------------RSNNARLRDVANDPQQVLDICNNNER 385

Query: 61  YMEEIHYMYDVPIVPPPVNRGRV 84
           YMEEIH MYD+PIVPP  +RG V
Sbjct: 386 YMEEIHNMYDLPIVPPLAHRGCV 394

[Close]

BLAST of PI0018674 vs. NCBI nr
Match: KAA0065673.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 28 VTRSATHRSNNRRLREVVDDPQQVLDICNNNERYMEEIHYMYDVPIVPPPVNRGRV 84
          +TR    RSNN +LR+V DDPQQVLDICNNNERY+EEIH MYD+PIVPPPV+RGRV
Sbjct: 19 ITRPGAARSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRV 74

[Close]

BLAST of PI0018674 vs. NCBI nr
Match: KAA0064245.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK18615.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.9e-16
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 18  HDSRWRDQFCVTRSATHRSNNRRLREVVDDPQQVLDICNNNERYMEEIHYMYDVPIVPPP 77
           H  R   QF + ++   RSNN RLR+V DDPQQVLDICNNNERYMEEIH MYD+PIVP P
Sbjct: 49  HPDRVLRQFGLKQNIPSRSNNARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIVPLP 108

Query: 78  VNRGRV 84
           ++RGR+
Sbjct: 109 IHRGRI 114

The following BLAST results are available for this feature:

BLAST of PI0018674 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBF8	6.9e-19	38.01	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BTN9	2.0e-18	63.86	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7V745	2.0e-18	63.86	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VBU8	6.5e-17	76.79	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7VEC1	1.9e-16	66.67	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0018674 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038951.1	1.4e-18	38.01	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK02837.1	4.2e-18	63.86	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0064192.1	4.2e-18	63.86	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0065673.1	1.3e-16	76.79	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0064245.1	3.9e-16	66.67	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0018674 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018674.1	PI0018674.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance