Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACAAGAACAAGGTTCCGTTCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCAGAATCATCATCAGAGAGAATCTTTTGTTCGACAACTCTACTCCTACTTCTAATCTATTAGAGAAAGAATCTCAACTTGAAGTAGTGTCTATCATGATGGCAGATGTAACAGCTGAGGCAGCCATGGCAGAGATGGAAAGGAAAATAAATTTCCTAATGAAGGTTGTCGAGGAGCGAGATCATGAAATCGCTTCCTTGAAAGATCATATAAAGGCTCGTGAAACTGCTGGGTCGAGCCAAACTCTTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAAACGCAACAGTCCATCTTCGTTGCCTCCCTGTTAGTCCAACAGCTACATGATATGATCACAAGCTCAATATGGAGGACCGCCACAAACTTCTTTTATGTACTCCAAGCCACATACCAAGAGAATCGATGACTTGAGAATGCCTGTTGGGTACCAACCTCCAAAGTTCCAACAGTTCGATGGAAGGGGCAATCCAAAACAACACATTGCTCATTTTGTTGAAACATGCAAAAATGCAGGATCAAGAGGAGACCAACTGGTCAGGCAGTTTGTTCGAAGCTTGAAAGGAAATGCTTTCGAGTGGTATACTAATTTGGAGCCAGAAGTGATTGACAACTGGGAACAGTTGGAAGGAGAGTTCCTCAACCGTTTCTACAGCACCAGGCGCATCGTCAACATGATGGAGCTGACAAGCACTAAACAGCGAAAGGGAGAGCCATTCATCGACAAAATAAACCGATGGAGAGCTTTGAGTTTAGATTGCAAAGATAAACTCACTGAACTGTCTGCAGTGGAGATGTGCACCCAAGGCATGCACTGGGAACTGCTCTATATTTTGCAGGGAATAAAACCTCGTACATTTGAAGAATTAGCAACTCGCGCCCATGATATGGAACCGAGCATTGCCAACAGAGGAGCAAATAATTTCTTGGTTTCGGAAATGAGGAGTGACAAGAATGAAGACAAGAACACTGAAAAGATCATGAATAGTGTCATAAAAGAATCTATGGTCGTTCATGCGACTCCAATGAAATCTTTCTCTAAAAGAAAAGAAACAAAAGTTGAAAGAAAGCATGAAGGCAATGAGAAGCATCATCCAACTCTCAAAGAAAGGCAGGCAAAAGCTTATCCATTTCCTGACTTTGATGTTGCAGACATGTTAGAGCAGCTGCTAGAGAAGCAACTTATTCAGCTGCCGGAATGCAAACGATCTGACTAAGCAGGAAAGGTAGATGATCCCAACTACTGCAAATATCATCGAGTCATCAGTCACCCTGTTGAAAAGTGTTTTGTGTTGAAGGAGCTGATTCTAAAGTTGGCTCATGAAAAGAAGATCGAGCTGGATATTGATGAAGTAGCTTAGACAAATTATGTTGCAGTCGAGATAATTTCACGTGTTCCCTCATCAACGCAACTTTGGAAAAGCTTGATTCAGTTTGGAACTTTTGAACATATAGTTGTTTGATTCCAACAAAAGATCGTGACGATAGACTCCCAAAACAAAGACGAGCCTGTTGAAGATGATGACAAAGGGTGGATCTTTGTGACTCGTCGAAAGAAAGGAAAGTTAAGTCTTGTCCATGAGAGGGTACGCTCCCACCAAAATTACAGAGGGGGAAGCAAAACTCACAAAAATAAAGGAAGAAAGAAGACGTGGAAGCCTAAGCGCATGCAGGAAGAAGATGATGACTTCCACCGACCTCAACGACCGGTAACTTTGGCAGAATTCCTCCCAAGAAACTTCTTTGATGGTCATCCAGAGGAAGTCTTGAAAGTCATTGCATATCATGCTATCAGCATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAAAAGTCGACAATTCAAGGGAAATCATGCAAAAGACTTCTGTCTTGGATCGTATTAAGCCTTCAACTACTCGATCTCCAGTCTTTCAAAGGTTGAGTTTGGCCACGAAAGAAGAAGAAAATCAATGTCCAAGGTCTACTTCTACTCGAACTTTAGCTTTCAAAAGGCTAAGCATCTCCACCTCAAAGAAAGATCGACCTTCAACATTAGTTTTTTATCGTCTAAAGATGACAAGTGATCAACATGAAAGAGAGATGAAAACTTTAAAGGTAAAACCATTTCATGAAGAAAACAATGATGATAAGATTCACAGTCGTGTCCTATCACGCATGAAGAGGAAGTTGTCTATTATACAGAAGACCCTCTGA
mRNA sequence
ATGGAAAAACAAGAACAAGGTTCCGTTCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCAGAATCATCATCAGAGAGAATCTTTTGTTCGACAACTCTACTCCTACTTCTAATCTATTAGAGAAAGAATCTCAACTTGAAGTAGTGTCTATCATGATGGCAGATGTAACAGCTGAGGCAGCCATGGCAGAGATGGAAAGGAAAATAAATTTCCTAATGAAGGTTGTCGAGGAGCGAGATCATGAAATCGCTTCCTTGAAAGATCATATAAAGGCTCGTGAAACTGCTGGGTCGAGCCAAACTCTTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAAACGCAACAGTCCATCTTCATCGTGACGATAGACTCCCAAAACAAAGACGAGCCTGTTGAAGATGATGACAAAGGGTGGATCTTTGTGACTCGTCGAAAGAAAGGAAAGTTAAGTCTTGTCCATGAGAGGGTACGCTCCCACCAAAATTACAGAGGGGGAAGCAAAACTCACAAAAATAAAGGAAGAAAGAAGACGTGGAAGCCTAAGCGCATGCAGGAAGAAGATGATGACTTCCACCGACCTCAACGACCGGTAACTTTGGCAGAATTCCTCCCAAGAAACTTCTTTGATGGTCATCCAGAGGAAGTCTTGAAAGTCATTGCATATCATGCTATCAGCATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAAAAGTCGACAATTCAAGGGAAATCATGCAAAAGACTTCTGTCTTGGATCGTATTAAGCCTTCAACTACTCGATCTCCAGTCTTTCAAAGGTTGAGTTTGGCCACGAAAGAAGAAGAAAATCAATGTCCAAGGTCTACTTCTACTCGAACTTTAGCTTTCAAAAGGCTAAGCATCTCCACCTCAAAGAAAGATCGACCTTCAACATTAGTTTTTTATCGTCTAAAGATGACAAGTGATCAACATGAAAGAGAGATGAAAACTTTAAAGGTAAAACCATTTCATGAAGAAAACAATGATGATAAGATTCACAGTCGTGTCCTATCACGCATGAAGAGGAAGTTGTCTATTATACAGAAGACCCTCTGA
Coding sequence (CDS)
ATGGAAAAACAAGAACAAGGTTCCGTTCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCAGAATCATCATCAGAGAGAATCTTTTGTTCGACAACTCTACTCCTACTTCTAATCTATTAGAGAAAGAATCTCAACTTGAAGTAGTGTCTATCATGATGGCAGATGTAACAGCTGAGGCAGCCATGGCAGAGATGGAAAGGAAAATAAATTTCCTAATGAAGGTTGTCGAGGAGCGAGATCATGAAATCGCTTCCTTGAAAGATCATATAAAGGCTCGTGAAACTGCTGGGTCGAGCCAAACTCTTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAAACGCAACAGTCCATCTTCATCGTGACGATAGACTCCCAAAACAAAGACGAGCCTGTTGAAGATGATGACAAAGGGTGGATCTTTGTGACTCGTCGAAAGAAAGGAAAGTTAAGTCTTGTCCATGAGAGGGTACGCTCCCACCAAAATTACAGAGGGGGAAGCAAAACTCACAAAAATAAAGGAAGAAAGAAGACGTGGAAGCCTAAGCGCATGCAGGAAGAAGATGATGACTTCCACCGACCTCAACGACCGGTAACTTTGGCAGAATTCCTCCCAAGAAACTTCTTTGATGGTCATCCAGAGGAAGTCTTGAAAGTCATTGCATATCATGCTATCAGCATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAAAAGTCGACAATTCAAGGGAAATCATGCAAAAGACTTCTGTCTTGGATCGTATTAAGCCTTCAACTACTCGATCTCCAGTCTTTCAAAGGTTGAGTTTGGCCACGAAAGAAGAAGAAAATCAATGTCCAAGGTCTACTTCTACTCGAACTTTAGCTTTCAAAAGGCTAAGCATCTCCACCTCAAAGAAAGATCGACCTTCAACATTAGTTTTTTATCGTCTAAAGATGACAAGTGATCAACATGAAAGAGAGATGAAAACTTTAAAGGTAAAACCATTTCATGAAGAAAACAATGATGATAAGATTCACAGTCGTGTCCTATCACGCATGAAGAGGAAGTTGTCTATTATACAGAAGACCCTCTGA
Protein sequence
MEKQEQGSVLTKKSWEQLMESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVTAEAAMAEMERKINFLMKVVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQQSIFIVTIDSQNKDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQNYRGGSKTHKNKGRKKTWKPKRMQEEDDDFHRPQRPVTLAEFLPRNFFDGHPEEVLKVIAYHAISIVEVDNNHASFEKVDNSREIMQKTSVLDRIKPSTTRSPVFQRLSLATKEEENQCPRSTSTRTLAFKRLSISTSKKDRPSTLVFYRLKMTSDQHEREMKTLKVKPFHEENNDDKIHSRVLSRMKRKLSIIQKTL
Homology
BLAST of PI0018663 vs. ExPASy TrEMBL
Match:
A0A5A7V6H5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00040 PE=4 SV=1)
HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 187/372 (50.27%), Postives = 242/372 (65.05%), Query Frame = 0
Query: 19 MESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVTAEAAMAEMERKINFLMK 78
MESPK I+++EN L+DNS S+ +KE+ +V+ MMA++TAEA MAEMERK+NFLMK
Sbjct: 1 MESPKAGIVLKENPLYDNSDSASSKSKKEAHPDVMFAMMANITAEAVMAEMERKVNFLMK 60
Query: 79 VVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQ-TQQSIFIVTIDSQNK 138
VVEERDHEI +L++ ++ RETA SSQT VVKA DKGK +Q+NQ QQS+ + ++ Q
Sbjct: 61 VVEERDHEITTLREQMQTRETAESSQTPVVKATDKGKNAVQDNQPQQQSVSVASLSVQQL 120
Query: 139 DEPVE-------------------------DDDKGWIFVTRRKKGKLSLVHERVRSHQNY 198
+ + D+ + + + R + + + + + Y
Sbjct: 121 HDMIANSIRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKCFRVY 180
Query: 199 RGGSKTHKNKGRKKTWKPKRMQEEDDDFHR-PQRPVTLAEFLPRNFFDGHPEEVLKVIAY 258
G +K +GR K M+ R R V + R+F + HPEE+L+V A
Sbjct: 181 DGVNKYQTTEGRANHRLHKPMESSKPGLQRQAHRTVCSRDVHLRSFLEDHPEEILEVTAC 240
Query: 259 HAISIVEVDNNHASFEKVDNSREIMQKTSVLDRIKPSTTRSPVFQRLSLATKEEENQCPR 318
H SIVEVDNN+ S+E+VDNS EI QKTSV DRIKP TTRS +FQRLS+ATK+EENQCP
Sbjct: 241 HTASIVEVDNNYGSYEEVDNSNEIKQKTSVFDRIKPLTTRSSIFQRLSMATKKEENQCPT 300
Query: 319 STSTRTLAFKRLSISTSKKDRPSTLVFYRLKMTSDQHEREMKTLKVKPFHEENNDDKIHS 364
T TRT AFKRLSIS SKKDRP+T F RLK+T+ Q +REMK+LK KPFHEEN+DDKIHS
Sbjct: 301 PTYTRTSAFKRLSISISKKDRPATSAFDRLKITNVQQQREMKSLKAKPFHEENDDDKIHS 360
BLAST of PI0018663 vs. ExPASy TrEMBL
Match:
A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)
HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 208/548 (37.96%), Postives = 266/548 (48.54%), Query Frame = 0
Query: 10 LTKKSWEQLMESPKGRIIIRENLLFD----NSTPTSNLLEKESQLEVVSIMMADV-TAEA 69
+ K WEQ+ + PKG I+I+EN D +S P+S E+ ++S+M+ +V T+E
Sbjct: 38 VAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSS---EEMPHPNIMSVMVTNVDTSEN 97
Query: 70 AMAEMERKINFLMKVVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQ 129
M E+E+K+N LMKVVEERD+EIA LK+HI++ + A SS VK DKGKA +QE+Q+Q
Sbjct: 98 RMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQ 157
Query: 130 QSIFI------------------------------------------------------- 189
S I
Sbjct: 158 NSTSIESLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQF 217
Query: 190 ------------------------------------------------------------ 249
Sbjct: 218 DGKGNPKQHVAHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISH 277
Query: 250 ------------------------------------------------------------ 309
Sbjct: 278 PVEKCFVLKELILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGT 337
Query: 310 ------------VTIDSQNKDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQNYRGGSK 364
VTI+SQNK+ +DD +GWI VTR+K + + + + R HQ Y GS
Sbjct: 338 FAPILVLFQQRTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSI 397
BLAST of PI0018663 vs. ExPASy TrEMBL
Match:
A0A5A7V1P3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004060 PE=4 SV=1)
HSP 1 Score: 287.3 bits (734), Expect = 8.8e-74
Identity = 205/556 (36.87%), Postives = 268/556 (48.20%), Query Frame = 0
Query: 2 EKQEQGSVLTKKSWEQLMESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVT 61
++Q QG + + +QL+ESPK +I+EN L+++ +S +KE+ V+S++MAD+T
Sbjct: 35 QEQNQGFDIAQSILKQLVESPKAGNVIKENPLYESDFASSK-SKKEAHPNVMSVIMADIT 94
Query: 62 AEAAMAEMERKINFLMKVVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQEN 121
EA AEMERKIN L+KVVEERDH+I + +D + E+ SS+T +VKA DKGKA LQEN
Sbjct: 95 TEATKAEMERKINLLVKVVEERDHKITAFRDQMWTCESTESSKTPLVKADDKGKAVLQEN 154
Query: 122 QTQQSIFIVTI------------------------------------------------- 181
Q Q SI I ++
Sbjct: 155 QMQHSISIASLSVQQLKGNPKQHIAHFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRR 214
Query: 182 ------------------------------------------------------------ 241
Sbjct: 215 VVSMMELKNIKQRKGEPVINYINRWRALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCK 274
Query: 242 ------------------------------------------------------------ 301
Sbjct: 275 HQRIISHPVEKCFVLKELILKLARENKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRE 334
Query: 302 ----------------------DSQNKDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQ 361
+SQ K+EP++DD K WI V R+K+ + + + + HQ
Sbjct: 335 SLIQFETFKPILVRFQQKIMMTNSQYKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQ 394
Query: 362 NYRGGSKTHKNKGR--KKTWKPKRMQEEDDDFHRPQRPVTLAEFLPRNFFDGHPEEVLKV 364
+ GS +HKNKG+ KK K K ++ +DDDF +P+R +TL EF PR+F +P+E+L++
Sbjct: 395 KHSKGSISHKNKGKRNKKMSKSKPIKGKDDDFLQPRRSITLTEFFPRSFLKDNPKEILEI 454
BLAST of PI0018663 vs. ExPASy TrEMBL
Match:
A0A5D3DBR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00850 PE=4 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73
Identity = 157/289 (54.33%), Postives = 207/289 (71.63%), Query Frame = 0
Query: 82 ERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQQSIF-----IVTIDSQN 141
E D + + +H+ T+ S ++++ YD+ K+ +Q + + I+T +SQN
Sbjct: 201 ELDIDEVAQTNHVAVNMTSSVSPSILL--YDQRKSLIQFGTFKPILVRFQQKIMTSNSQN 260
Query: 142 KDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQNYRGGSKTHKNKGR--KKTWKPKRMQ 201
K+EP+ED+ + WI V +K+ + S + + HQ Y G+ +H KGR KK WKPK M+
Sbjct: 261 KEEPIEDEGEEWIVVAHKKERQTSSIQTKSHFHQKYSKGNISHNKKGRRNKKMWKPKPMK 320
Query: 202 EEDDDFHRPQRPVTLAEFLPRNFFDGHPEEVLKVIAYHAISIVEVDNNHASFEKVDNSRE 261
+D+DF +P+R +TLA+FLPRNF + HPEE+L+V A H SIVEVDNN+ S+E+VDNS E
Sbjct: 321 GKDEDFLQPRRSITLAKFLPRNFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEVDNSNE 380
Query: 262 IMQKTSVLDRIKPSTTRSPVFQRLSLATKEEENQCPRSTSTRTLAFKRLSISTSKKDRPS 321
I Q+TSV +RIKP TTRS VFQRLS+ATKEEENQCP ST RT A KRLSISTSKK RPS
Sbjct: 381 IKQRTSVFNRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSALKRLSISTSKKHRPS 440
Query: 322 TLVFYRLKMTSDQHEREMKTLKVKPFHEENNDDKIHSRVLSRMKRKLSI 364
T F RLKMT+DQ +REMK+LK KPFHEEN+DDKIH R+ SR+KRK S+
Sbjct: 441 TPAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHIRIPSRIKRKFSV 487
BLAST of PI0018663 vs. ExPASy TrEMBL
Match:
A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)
HSP 1 Score: 285.0 bits (728), Expect = 4.4e-73
Identity = 212/601 (35.27%), Postives = 273/601 (45.42%), Query Frame = 0
Query: 19 MESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVTAEAAMAEMERKINFLMK 78
M+SPK I+++EN L+DNS S+ +KE+ +V+S+MMAD+T EAA+AEMERK+NFLMK
Sbjct: 1 MDSPKAEIVLKENPLYDNSDSASSKSKKETHPDVMSVMMADITVEAAIAEMERKVNFLMK 60
Query: 79 VVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQQ------------- 138
VVEERDHEI +L++ ++ ET SSQT VVKA DKGK +QEN+ QQ
Sbjct: 61 VVEERDHEITTLREQMQTHETTKSSQTPVVKATDKGKNVVQENKPQQQSISVASLSVQQL 120
Query: 139 ------------------------------------------------------------ 198
Sbjct: 121 QDIIANSIRAQYGGPLQTSFMYSKPYTKRIDNLRMPLGYQPLKFQKFDGKGNPKQHIAHF 180
Query: 199 ------------------------SIF--------------------------------- 258
S F
Sbjct: 181 VETCENAGSRGGQLVRQFIRSLKESAFECTRLVVSMMELTNTKQRKGEPIIDYINRWRAL 240
Query: 259 ------------------------------------------------------------ 318
Sbjct: 241 SLDCKDKLTELSAVEMCPQEKQLIQLPECKRPEQAGKVDDPNCCNYHRVISHPVEKCFVL 300
Query: 319 ------------------------------------------------------------ 364
Sbjct: 301 KELILKLARENKIELDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFETFESILVRF 360
BLAST of PI0018663 vs. NCBI nr
Match:
KAA0061331.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 306.2 bits (783), Expect = 3.8e-79
Identity = 187/372 (50.27%), Postives = 242/372 (65.05%), Query Frame = 0
Query: 19 MESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVTAEAAMAEMERKINFLMK 78
MESPK I+++EN L+DNS S+ +KE+ +V+ MMA++TAEA MAEMERK+NFLMK
Sbjct: 1 MESPKAGIVLKENPLYDNSDSASSKSKKEAHPDVMFAMMANITAEAVMAEMERKVNFLMK 60
Query: 79 VVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQ-TQQSIFIVTIDSQNK 138
VVEERDHEI +L++ ++ RETA SSQT VVKA DKGK +Q+NQ QQS+ + ++ Q
Sbjct: 61 VVEERDHEITTLREQMQTRETAESSQTPVVKATDKGKNAVQDNQPQQQSVSVASLSVQQL 120
Query: 139 DEPVE-------------------------DDDKGWIFVTRRKKGKLSLVHERVRSHQNY 198
+ + D+ + + + R + + + + + Y
Sbjct: 121 HDMIANSIRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKCFRVY 180
Query: 199 RGGSKTHKNKGRKKTWKPKRMQEEDDDFHR-PQRPVTLAEFLPRNFFDGHPEEVLKVIAY 258
G +K +GR K M+ R R V + R+F + HPEE+L+V A
Sbjct: 181 DGVNKYQTTEGRANHRLHKPMESSKPGLQRQAHRTVCSRDVHLRSFLEDHPEEILEVTAC 240
Query: 259 HAISIVEVDNNHASFEKVDNSREIMQKTSVLDRIKPSTTRSPVFQRLSLATKEEENQCPR 318
H SIVEVDNN+ S+E+VDNS EI QKTSV DRIKP TTRS +FQRLS+ATK+EENQCP
Sbjct: 241 HTASIVEVDNNYGSYEEVDNSNEIKQKTSVFDRIKPLTTRSSIFQRLSMATKKEENQCPT 300
Query: 319 STSTRTLAFKRLSISTSKKDRPSTLVFYRLKMTSDQHEREMKTLKVKPFHEENNDDKIHS 364
T TRT AFKRLSIS SKKDRP+T F RLK+T+ Q +REMK+LK KPFHEEN+DDKIHS
Sbjct: 301 PTYTRTSAFKRLSISISKKDRPATSAFDRLKITNVQQQREMKSLKAKPFHEENDDDKIHS 360
BLAST of PI0018663 vs. NCBI nr
Match:
TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 290.4 bits (742), Expect = 2.1e-74
Identity = 208/548 (37.96%), Postives = 266/548 (48.54%), Query Frame = 0
Query: 10 LTKKSWEQLMESPKGRIIIRENLLFD----NSTPTSNLLEKESQLEVVSIMMADV-TAEA 69
+ K WEQ+ + PKG I+I+EN D +S P+S E+ ++S+M+ +V T+E
Sbjct: 38 VAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSS---EEMPHPNIMSVMVTNVDTSEN 97
Query: 70 AMAEMERKINFLMKVVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQ 129
M E+E+K+N LMKVVEERD+EIA LK+HI++ + A SS VK DKGKA +QE+Q+Q
Sbjct: 98 RMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQ 157
Query: 130 QSIFI------------------------------------------------------- 189
S I
Sbjct: 158 NSTSIESLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQF 217
Query: 190 ------------------------------------------------------------ 249
Sbjct: 218 DGKGNPKQHVAHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISH 277
Query: 250 ------------------------------------------------------------ 309
Sbjct: 278 PVEKCFVLKELILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGT 337
Query: 310 ------------VTIDSQNKDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQNYRGGSK 364
VTI+SQNK+ +DD +GWI VTR+K + + + + R HQ Y GS
Sbjct: 338 FAPILVLFQQRTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSI 397
BLAST of PI0018663 vs. NCBI nr
Match:
KAA0062063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 287.3 bits (734), Expect = 1.8e-73
Identity = 205/556 (36.87%), Postives = 268/556 (48.20%), Query Frame = 0
Query: 2 EKQEQGSVLTKKSWEQLMESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVT 61
++Q QG + + +QL+ESPK +I+EN L+++ +S +KE+ V+S++MAD+T
Sbjct: 35 QEQNQGFDIAQSILKQLVESPKAGNVIKENPLYESDFASSK-SKKEAHPNVMSVIMADIT 94
Query: 62 AEAAMAEMERKINFLMKVVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQEN 121
EA AEMERKIN L+KVVEERDH+I + +D + E+ SS+T +VKA DKGKA LQEN
Sbjct: 95 TEATKAEMERKINLLVKVVEERDHKITAFRDQMWTCESTESSKTPLVKADDKGKAVLQEN 154
Query: 122 QTQQSIFIVTI------------------------------------------------- 181
Q Q SI I ++
Sbjct: 155 QMQHSISIASLSVQQLKGNPKQHIAHFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRR 214
Query: 182 ------------------------------------------------------------ 241
Sbjct: 215 VVSMMELKNIKQRKGEPVINYINRWRALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCK 274
Query: 242 ------------------------------------------------------------ 301
Sbjct: 275 HQRIISHPVEKCFVLKELILKLARENKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRE 334
Query: 302 ----------------------DSQNKDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQ 361
+SQ K+EP++DD K WI V R+K+ + + + + HQ
Sbjct: 335 SLIQFETFKPILVRFQQKIMMTNSQYKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQ 394
Query: 362 NYRGGSKTHKNKGR--KKTWKPKRMQEEDDDFHRPQRPVTLAEFLPRNFFDGHPEEVLKV 364
+ GS +HKNKG+ KK K K ++ +DDDF +P+R +TL EF PR+F +P+E+L++
Sbjct: 395 KHSKGSISHKNKGKRNKKMSKSKPIKGKDDDFLQPRRSITLTEFFPRSFLKDNPKEILEI 454
BLAST of PI0018663 vs. NCBI nr
Match:
TYK20938.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 285.4 bits (729), Expect = 6.9e-73
Identity = 157/289 (54.33%), Postives = 207/289 (71.63%), Query Frame = 0
Query: 82 ERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQQSIF-----IVTIDSQN 141
E D + + +H+ T+ S ++++ YD+ K+ +Q + + I+T +SQN
Sbjct: 201 ELDIDEVAQTNHVAVNMTSSVSPSILL--YDQRKSLIQFGTFKPILVRFQQKIMTSNSQN 260
Query: 142 KDEPVEDDDKGWIFVTRRKKGKLSLVHERVRSHQNYRGGSKTHKNKGR--KKTWKPKRMQ 201
K+EP+ED+ + WI V +K+ + S + + HQ Y G+ +H KGR KK WKPK M+
Sbjct: 261 KEEPIEDEGEEWIVVAHKKERQTSSIQTKSHFHQKYSKGNISHNKKGRRNKKMWKPKPMK 320
Query: 202 EEDDDFHRPQRPVTLAEFLPRNFFDGHPEEVLKVIAYHAISIVEVDNNHASFEKVDNSRE 261
+D+DF +P+R +TLA+FLPRNF + HPEE+L+V A H SIVEVDNN+ S+E+VDNS E
Sbjct: 321 GKDEDFLQPRRSITLAKFLPRNFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEVDNSNE 380
Query: 262 IMQKTSVLDRIKPSTTRSPVFQRLSLATKEEENQCPRSTSTRTLAFKRLSISTSKKDRPS 321
I Q+TSV +RIKP TTRS VFQRLS+ATKEEENQCP ST RT A KRLSISTSKK RPS
Sbjct: 381 IKQRTSVFNRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSALKRLSISTSKKHRPS 440
Query: 322 TLVFYRLKMTSDQHEREMKTLKVKPFHEENNDDKIHSRVLSRMKRKLSI 364
T F RLKMT+DQ +REMK+LK KPFHEEN+DDKIH R+ SR+KRK S+
Sbjct: 441 TPAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHIRIPSRIKRKFSV 487
BLAST of PI0018663 vs. NCBI nr
Match:
TYK08171.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 285.0 bits (728), Expect = 9.0e-73
Identity = 212/601 (35.27%), Postives = 273/601 (45.42%), Query Frame = 0
Query: 19 MESPKGRIIIRENLLFDNSTPTSNLLEKESQLEVVSIMMADVTAEAAMAEMERKINFLMK 78
M+SPK I+++EN L+DNS S+ +KE+ +V+S+MMAD+T EAA+AEMERK+NFLMK
Sbjct: 1 MDSPKAEIVLKENPLYDNSDSASSKSKKETHPDVMSVMMADITVEAAIAEMERKVNFLMK 60
Query: 79 VVEERDHEIASLKDHIKARETAGSSQTLVVKAYDKGKATLQENQTQQ------------- 138
VVEERDHEI +L++ ++ ET SSQT VVKA DKGK +QEN+ QQ
Sbjct: 61 VVEERDHEITTLREQMQTHETTKSSQTPVVKATDKGKNVVQENKPQQQSISVASLSVQQL 120
Query: 139 ------------------------------------------------------------ 198
Sbjct: 121 QDIIANSIRAQYGGPLQTSFMYSKPYTKRIDNLRMPLGYQPLKFQKFDGKGNPKQHIAHF 180
Query: 199 ------------------------SIF--------------------------------- 258
S F
Sbjct: 181 VETCENAGSRGGQLVRQFIRSLKESAFECTRLVVSMMELTNTKQRKGEPIIDYINRWRAL 240
Query: 259 ------------------------------------------------------------ 318
Sbjct: 241 SLDCKDKLTELSAVEMCPQEKQLIQLPECKRPEQAGKVDDPNCCNYHRVISHPVEKCFVL 300
Query: 319 ------------------------------------------------------------ 364
Sbjct: 301 KKLILKLARENKIELDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFETFESILVRF 360
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V6H5 | 1.8e-79 | 50.27 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3CD55 | 1.0e-74 | 37.96 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7V1P3 | 8.8e-74 | 36.87 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3DBR8 | 3.3e-73 | 54.33 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7UWX8 | 4.4e-73 | 35.27 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061331.1 | 3.8e-79 | 50.27 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gyp... | [more] |
| TYK09793.1 | 2.1e-74 | 37.96 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0062063.1 | 1.8e-73 | 36.87 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK20938.1 | 6.9e-73 | 54.33 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK08171.1 | 9.0e-73 | 35.27 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
