PI0018652 (gene) Melon (PI 482460) v1

Overview


Name	PI0018652
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Location	chr11: 27104203 .. 27105861 (-)
RNA-Seq Expression	PI0018652
Synteny	PI0018652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGAGATATAGATCAGAAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCGGCACACACAAGATTAATTGAAAATGGCCGCTGCTAGCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTGAAAGAAAATCATCACCCAACATTATTATTCCTTTTGCTGTACTACCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTACCCATTCTCTTTTAGCTCTCCATTCTCGATTTCAAGTCATGTTCGATGTGTGAGTGTCTATATATGCATATTATAAGTTCTGCAAAGTAATTATGGTTGTTATATTCCTTGATAACAAAAGGAAAAAGAATGTGAATGTGAATGGTGGATAAAATAGAATGTCGACCCTAGGAACTTGCATAAGTGATTCGGTTGATGGGGTTTAGTATGACAAGATCCATGAGATTGATGTTCCAAGTTTTCCTCTTTACACATTGGTTTGATCCAATAAGCAAGAGATGACAACCACTTCACACAGTATGTTGCCTCCATAAAGTATAACCTCATGTTTTTCTAAGGAATTTTCCAGGATGTGTTTGAGGTTGAAGAGTCAAATTGTAAAACGTGGCATTTAGGGTAAGGAATAGAAATAGTAAATTTAGAGTTATGTATACCATCGCCCACATGTAATAAGTTAATAAGGTATAAAACGGATATTTGTTTGACAGTGCAACTCACAAATTTCTTAGGCTAAACAAGAAGTATAGGAGTTCACAACTTCACTCTCCAACTAGTTGAGCCAAATAGCCCTTCTAAAATCGGTGCGAACTTTTGTTGAGGGTGTTTAACCCAAGGAGTTGGAGTTTAAGGGGAGTGGAATTTTGAACTCCACTCTTTAGAGTTCATGAGCTTCAAAGTACTAAAAAATATCAATCTTATGTTTTATTAAACCCTTATATTATACCCTACAAATATCCTATAACTACAAATATCACAACTTCATTTCTTGTCCTCAAACATTCCATAAGATGATCCACAAACTTCCTATATGCCAAACTAACAAAAAATTCAGTTCGAATGTTGCAAACCTATATAATTCAATATACCACTCATATATCGTATATGATTTGATTTTAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGATGGAAGTAAGTAATCTCAAACTCTAATATATATTTTACTTTGAACTTAAATAACTGAAGCTAGGGTAATTGAATTGATGATCCATTGATTTTCTTAAATTGTTTGATTTAGATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACCCCAGAACAAAGGGGAGAAAGATAAATGCATACAACAACTGCTCCTAAACCCTTTATATATTACATATACTTTCAATTTCGTATTTTTCCTAATCTCATAAGGTTTCTAATTTTTTTTATATTTTGTATATTAAATGTGTGTTTGATTTTCTTTTTTCATTTTTAACTTTGGCTATTGCGAATATTTTATACTCAACACATACTAACATTAATTATTCATAGTTTAAACTAAGATGTTGAGCTTATTCAAATTATTTAATGGATTAAAA

mRNA sequence

GTTGTGAGATATAGATCAGAAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCGGCACACACAAGATTAATTGAAAATGGCCGCTGCTAGCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTGAAAGAAAATCATCACCCAACATTATTATTCCTTTTGCTGTACTACCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGATGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACCCCAGAACAAAGGGGAGAAAGATAAATGCATACAACAACTGCTCCTAAACCCTTTATATATTACATATACTTTCAATTTCGTATTTTTCCTAATCTCATAAGGTTTCTAATTTTTTTTATATTTTGTATATTAAATGTGTGTTTGATTTTCTTTTTTCATTTTTAACTTTGGCTATTGCGAATATTTTATACTCAACACATACTAACATTAATTATTCATAGTTTAAACTAAGATGTTGAGCTTATTCAAATTATTTAATGGATTAAAA

Coding sequence (CDS)

ATGGCCGCTGCTAGCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTGTTAGAAGTGAAAGAAAATCATCACCCAACATTATTATTCCTTTTGCTGTACTACCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAATAAGAAAAACGGAAACATCTTCGAGCGATGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGTCTCACCCCAGAACAAAGGGGAGAAAGATAA

Protein sequence

MAAASSTSINIFPFPSYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER

Homology

[Close]

BLAST of PI0018652 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 2   AAASSTSINIFPFPSYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGC 61
           A ++STSINIFPFPSYQIVRS+ KSSPNI +PFA LPTSNLLPKRCQKCGGKGAIDCPGC
Sbjct: 3   ATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCPGC 62

Query: 62  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 63  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of PI0018652 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 3   AASSTSINIFPFPSYQIVRSERKSSPN-IIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGC 62
           AA+STSINIFPFPSYQI RS+RKSSPN II+PFA LPTSNLLPKRCQKCGGKGAIDCPGC
Sbjct: 2   AATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGC 61

Query: 63  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 62  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of PI0018652 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.8e-35
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 5   SSTSINIFPFP--SYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGCK 64
           S+ S + FPFP   + I+   +  S    IPFA  P  + LPKRCQ CGGKGAIDCPGCK
Sbjct: 11  SNNSTSPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFS-LPKRCQTCGGKGAIDCPGCK 70

Query: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           GTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 71  GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of PI0018652 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.7e-34
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 2   AAASSTSINIFPFP----SYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAID 61
           ++ S ++ + FPFP     + I+   +  S    IPFA  P  + LPKRCQ CGGKGAID
Sbjct: 6   SSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFS-LPKRCQTCGGKGAID 65

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           C GCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 66  CTGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of PI0018652 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.8e-33
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 3   AASSTSIN-IFPF-------PSYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKG 62
           + SS +IN IFPF       P   ++    K      I F    T + LPKRCQKCGGKG
Sbjct: 10  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFGAAATFS-LPKRCQKCGGKG 69

Query: 63  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG GGLTPEQRGER
Sbjct: 70  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER 120

[Close]

BLAST of PI0018652 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 2.5e-52
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 2   AAASSTSINIFPFPSYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGC 61
           A ++STSINIFPFPSYQIVRS+ KSSPNI +PFA LPTSNLLPKRCQKCGGKGAIDCPGC
Sbjct: 3   ATSTSTSINIFPFPSYQIVRSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAIDCPGC 62

Query: 62  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 63  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of PI0018652 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 5.6e-52
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 3   AASSTSINIFPFPSYQIVRSERKSSPN-IIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGC 62
           AA+STSINIFPFPSYQI RS+RKSSPN II+PFA LPTSNLLPKRCQKCGGKGAIDCPGC
Sbjct: 2   AATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGC 61

Query: 63  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 62  KGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of PI0018652 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38
Identity = 81/111 (72.97%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MAAASSTSINIFPFPSYQIVRS-----ERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGA 60
           MA A ++S NIFPF  Y++VRS      +  S NI +  A    S LLPKRCQKCGGKGA
Sbjct: 7   MAMAMASSNNIFPFSPYRLVRSSPPYTSKTKSSNISLAAAAAARS-LLPKRCQKCGGKGA 66

Query: 61  IDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           IDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQRGER
Sbjct: 67  IDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER 116

[Close]

BLAST of PI0018652 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 5   SSTSINIFPFP--SYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAIDCPGCK 64
           S+ S + FPFP   + I+   +  S    IPFA  P  + LPKRCQ CGGKGAIDCPGCK
Sbjct: 11  SNNSTSPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFS-LPKRCQTCGGKGAIDCPGCK 70

Query: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           GTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 71  GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of PI0018652 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   AAASSTSINIFPFP----SYQIVRSERKSSPNIIIPFAVLPTSNLLPKRCQKCGGKGAID 61
           ++ S ++ + FPFP     + I+   +  S    IPFA  P  + LPKRCQ CGGKGAID
Sbjct: 6   SSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFS-LPKRCQTCGGKGAID 65

Query: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 66  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

[Close]

BLAST of PI0018652 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 45  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRG 104
           K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CGKGGLTPEQRG
Sbjct: 49  KSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRG 108

Query: 105 ER 107
           ER
Sbjct: 109 ER 110

The following BLAST results are available for this feature:

BLAST of PI0018652 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9W1	1.2e-52	92.38	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LIM5	2.7e-52	94.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1	[more]
A0A6J1HLG5	8.8e-35	71.15	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JSI3	9.7e-34	66.06	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DHW0	4.8e-33	66.96	uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of PI0018652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459263.1	2.5e-52	92.38	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo]	[more]
XP_004153120.1	5.6e-52	94.29	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hy...	[more]
XP_038901776.1	3.5e-38	72.97	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_022963874.1	1.8e-34	71.15	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata]	[more]
XP_023521952.1	2.4e-34	66.97	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of PI0018652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22630.1	4.5e-31	85.48	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXP...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 40..106
None	No IPR available	PANTHER	PTHR15852:SF55	PROTEIN EMBRYO SAC DEVELOPMENT ARREST 3, CHLOROPLASTIC ISOFORM X1	coord: 40..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018652.1	PI0018652.1	mRNA