PI0018478 (gene) Melon (PI 482460) v1

Overview


Name	PI0018478
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PUM-HD domain-containing protein
Location	chr01: 874011 .. 875004 (-)
RNA-Seq Expression	PI0018478
Synteny	PI0018478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTGATCTTACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGACCAGGCCGGTTGTTGTATACTCCAAGACTGCATTGAATATTCCAATAATAACTTCAGACAACTTCGAGAATTTTTAATCTCTCCATTGATAGAAGATGCACACGATCTTTCAAAACATCCTTATGGGTAATTTTATTTCGTTATCTTATACATGCATGTTATTAATCCTAGTAATTAGCTTGGGTTGGTTTGAATTAGTTATTGATTATATATTAATTGTTAATTGCAGGAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGATGGAGAATAATCAAACAGCTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTTGTGGAAAAATGTCTATCTTGTTGTGAAGGTGTCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATCATCAAGATCAACTCATCCAAATTTGTACCAATCAATATGGTAATTATGTTGTTCAAACAGCCATGTCTATTGCTAAGGTTTGTGTTTATTTTTCCTCCTTAATTAATATATTTTTTGCATTTTAATCTAAGAACAATCACAAAAGGTTAACATGTTAACTTAAAAATATTATATACTAGTTAGTTGTGTTTAATGTAACAACGTGTCTATATTTATTGAGAATGTCAACATAAAGTCAGCAGTACACATTATTGCTAGAGAAGGGGAAAGGTCAACTAATAGAGTGAGAGCATATGATCTCAAGTGGCAAAACAATATCATGTTGTTACCTTCATCCTTAAGATGTTTGAAGAATTGTTAGTCTCTAACAATGTTTTTTTATATTGCAGGGAAAAACTCACAAGTTGCTTGAAAAAGCCATTAAGAGACATTGGCTTGCTCTTCATTGTAATCCGTATGGAAGAAATGTGATTTCATCAGCTAAACGTGATAAAAAGAAGTCCAAATTATTAGAGTACTTTTAA

mRNA sequence

ATGCAGTTGATCTTACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGACCAGGCCGGTTGTTGTATACTCCAAGACTGCATTGAATATTCCAATAATAACTTCAGACAACTTCGAGAATTTTTAATCTCTCCATTGATAGAAGATGCACACGATCTTTCAAAACATCCTTATGGGAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGATGGAGAATAATCAAACAGCTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTTGTGGAAAAATGTCTATCTTGTTGTGAAGGTGTCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATCATCAAGATCAACTCATCCAAATTTGTACCAATCAATATGGTAATTATGTTGTTCAAACAGCCATGTCTATTGCTAAGGGAAAAACTCACAAGTTGCTTGAAAAAGCCATTAAGAGACATTGGCTTGCTCTTCATTGTAATCCGTATGGAAGAAATGTGATTTCATCAGCTAAACGTGATAAAAAGAAGTCCAAATTATTAGAGTACTTTTAA

Coding sequence (CDS)

ATGCAGTTGATCTTACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGACCAGGCCGGTTGTTGTATACTCCAAGACTGCATTGAATATTCCAATAATAACTTCAGACAACTTCGAGAATTTTTAATCTCTCCATTGATAGAAGATGCACACGATCTTTCAAAACATCCTTATGGGAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGATGGAGAATAATCAAACAGCTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTTGTGGAAAAATGTCTATCTTGTTGTGAAGGTGTCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATCATCAAGATCAACTCATCCAAATTTGTACCAATCAATATGGTAATTATGTTGTTCAAACAGCCATGTCTATTGCTAAGGGAAAAACTCACAAGTTGCTTGAAAAAGCCATTAAGAGACATTGGCTTGCTCTTCATTGTAATCCGTATGGAAGAAATGTGATTTCATCAGCTAAACGTGATAAAAAGAAGTCCAAATTATTAGAGTACTTTTAA

Protein sequence

MQLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRDKKKSKLLEYF

Homology

[Close]

BLAST of PI0018478 vs. ExPASy Swiss-Prot
Match: Q9LVC3 (Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 7.4e-29
Identity = 69/173 (39.88%), Postives = 103/173 (59.54%), Query Frame = 0


Query: 11  NCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQL 70
           +C+ELA D+ GCC+LQ C+ YS     + ++ L+S +  +A  LS+ P+GNYV+Q++ +L
Sbjct: 429 HCVELATDRHGCCVLQKCLGYSEG---EQKQHLVSEIASNALLLSQDPFGNYVLQYVFEL 488

Query: 71  DGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQI 130
                 + I++QL   + ELSM K  SNVVEKCL   +      I  I E  +  +L Q+
Sbjct: 489 QLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARI--IRELINYGRLDQV 548

Query: 131 CTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRDK 184
             + YGNYV+Q A+  +KG  H LL  AIK +  +L  NPYG+ V+S+    K
Sbjct: 549 MLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596

[Close]

BLAST of PI0018478 vs. ExPASy Swiss-Prot
Match: Q9C9R6 (Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM7 PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-25
Identity = 63/166 (37.95%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 12  CLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQLD 71
           C E+A  + GCC+LQ CI YS    RQ RE LI+ +  ++  L++ P+GNY +QF+I+L 
Sbjct: 486 CTEIATHRHGCCVLQKCIAYS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELR 545

Query: 72  GTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQIC 131
             +    ++ QL   +V+LSM K+ S++VE+CL  C      I+ E++   H DQL+Q  
Sbjct: 546 IPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQ-- 605

Query: 132 TNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVIS 178
            + Y N+V+Q A++  KG  H  L + I+ H + L  NPY + + S
Sbjct: 606 -DPYANFVIQAALAATKGPLHASLVEVIRPHSI-LRNNPYCKRIFS 644

[Close]

BLAST of PI0018478 vs. ExPASy Swiss-Prot
Match: Q9LM20 (Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM8 PE=3 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 3.8e-25
Identity = 60/166 (36.14%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 12  CLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQLD 71
           C+++A  + GCC+LQ CI YS+      RE L++ +  ++  L++ PYGNY +QF+++L 
Sbjct: 351 CIDIATHRHGCCVLQKCIAYSSG---LQREKLVTEISRNSLFLAQDPYGNYAVQFVLELR 410

Query: 72  GTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQIC 131
             +    ++ QL   +VELSM K+ S++VE+CL+ C      I+ E++   H D LIQ  
Sbjct: 411 DFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQ-- 470

Query: 132 TNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVIS 178
            + Y N+V+Q A+++ KG  H  L + I+ H + L  NPY + + S
Sbjct: 471 -DPYANFVIQAALAVTKGSLHATLVEVIRPHSI-LRNNPYCKRIFS 509

[Close]

BLAST of PI0018478 vs. ExPASy Swiss-Prot
Match: P0DN95 (Pumilio homolog 15 OS=Arabidopsis thaliana OX=3702 GN=APUM15 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 8   VAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFM 67
           + QNC ++A DQ GCC+L+  I  S+   R+LR+ LI  +I  A  L  + YGNYV+Q++
Sbjct: 277 IVQNCYQVAIDQNGCCMLKKLIRQSS---RELRDPLIKEIISIAVRLCGNCYGNYVVQYL 336

Query: 68  IQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQL 127
           ++L    +   + K L   +V+LS DKYGS+VV+KCL   E  S  II E+L       +
Sbjct: 337 LRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRRIIAELL-----SDI 396

Query: 128 IQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVI 177
             +  + YG+YV+QTA  +++     +L   I R+   + CN YGR ++
Sbjct: 397 DSLLVDPYGDYVIQTAWIVSEDHVRHVLLFYINRNVPFMRCNVYGRKLL 437

[Close]

BLAST of PI0018478 vs. ExPASy Swiss-Prot
Match: Q9FMH4 (Putative pumilio homolog 13 OS=Arabidopsis thaliana OX=3702 GN=APUM13 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 55/169 (32.54%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 8   VAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFM 67
           V+Q+C ++A DQ GCC+LQ C +       ++R+ LIS +IE A  L  + +GNYV+Q++
Sbjct: 359 VSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYV 418

Query: 68  IQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQL 127
           ++LD  +    ++ +L   +  L+ +KYGS+VV+K L      S  I+ ++L G     +
Sbjct: 419 VELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSKLIVVDLLRG-----I 478

Query: 128 IQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVI 177
             +  + +GNYV+QTA  ++K    ++L   I+R+   + CN +G  ++
Sbjct: 479 DTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKIL 522

[Close]

BLAST of PI0018478 vs. ExPASy TrEMBL
Match: A0A0A0K7S4 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.6e-87
Identity = 160/191 (83.77%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MQLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYG 60
           MQLI+LRVAQNCLELAR QA CCILQ+CIEYSNNN RQL+E LISPLI+D +DLSKHPYG
Sbjct: 1   MQLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYG 60

Query: 61  NYVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILE 120
           NYVIQFMIQLDGTNIG RIIK+LTHKFVELSMDKYGSNVVEKCLSCCEG+SNDIIFEILE
Sbjct: 61  NYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILE 120

Query: 121 GNHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAK 180
           GN +D+LIQICTNQYGN+VVQT MSIAKGK  KLLEKAIK HWL L  + YGRNVISS +
Sbjct: 121 GNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIR 180

Query: 181 RDKKKSKLLEY 192
           RDKKK+KL +Y
Sbjct: 181 RDKKKAKLSKY 191

[Close]

BLAST of PI0018478 vs. ExPASy TrEMBL
Match: A0A1S3C139 (putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495672 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.7e-49
Identity = 94/103 (91.26%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           +LILLRVAQNCLELAR+QAGCCILQ+CIEYSNNNFRQLRE LI+PLIEDA+DLSKHPYGN
Sbjct: 146 ELILLRVAQNCLELAREQAGCCILQECIEYSNNNFRQLREVLITPLIEDAYDLSKHPYGN 205

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCL 105
           YVIQFMIQLDGTNIGWR+IK+LTHKFVELSMDKYGSNVVEKC+
Sbjct: 206 YVIQFMIQLDGTNIGWRVIKELTHKFVELSMDKYGSNVVEKCV 248

[Close]

BLAST of PI0018478 vs. ExPASy TrEMBL
Match: A0A6J1D5W5 (pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 95/187 (50.80%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           ++ILL +A N LELA+D+ GCCIL  CI Y+      LR  L++PLI++A  LS H Y N
Sbjct: 255 EMILLEIAHNSLELAKDKNGCCILPFCILYAEGT---LRGVLVTPLIQEARHLSTHFYAN 314

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEG 121
           +VIQF+I+LD  NIG R+I+ L +KFVEL + K GS+VVEKCL C E  +  IIFEI+E 
Sbjct: 315 FVIQFLIELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME- 374

Query: 122 NHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKR 181
            +++  IQ+ TNQYGNYV Q A+S+AKG+ + LL +AIK     L  +PYGR+V+++A +
Sbjct: 375 -NKENWIQVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAVK 434

Query: 182 DKKKSKL 189
            K++S +
Sbjct: 435 RKRRSSI 436

[Close]

BLAST of PI0018478 vs. ExPASy TrEMBL
Match: A0A1D1XXP3 (Pumilio 12 OS=Anthurium amnicola OX=1678845 GN=APUM12_0 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 11  NCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQL 70
           +C+ELARD+ GCC+LQ C+ + +    QLRE LIS +  +A  LS+ P+GNYVIQ++++L
Sbjct: 676 HCVELARDRRGCCVLQKCLSHCSG---QLREQLISEISCNALVLSQDPFGNYVIQYLLEL 735

Query: 71  DGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQI 130
              +    ++ QL   F  LSM KY SNVVEKCL C     +  I  ILE     QL+QI
Sbjct: 736 KVASAMEDVLNQLKDNFGYLSMQKYSSNVVEKCLKC--ATEDQRILIILELIKCPQLLQI 795

Query: 131 CTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRDK 184
             + YGNYV+Q+A+ + KG  H    K I+ H  AL  NPYGR V+SS  R K
Sbjct: 796 LQDPYGNYVIQSAIKLCKGALHAAFMKVIRPHIPALRSNPYGRKVLSSFSRKK 843

[Close]

BLAST of PI0018478 vs. ExPASy TrEMBL
Match: A0A6P5XBS2 (putative pumilio homolog 8, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111281647 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-31
Identity = 72/188 (38.30%), Postives = 122/188 (64.89%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           +L++  + ++CL++A D++GCC+LQ C++++     + R+ L++ +  +A  LS+HPYGN
Sbjct: 372 KLLVDEIVEHCLDIATDKSGCCVLQQCLDHAK---AEARKRLLAEITANAFVLSEHPYGN 431

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCL-SCCEGVSNDIIFEILE 121
           YV+Q+++ +   ++   II  L   +V LSM+KYGSNVVEKCL    EG S  II EI+ 
Sbjct: 432 YVVQYVLGMRVPHVTSNIIVHLGGSYVTLSMNKYGSNVVEKCLKDAGEGHSARIITEIM- 491

Query: 122 GNHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAK 181
             H    +++  + YGNYVVQ+A+ ++KG  H  L + I+RH+  LH + +G+ V++  K
Sbjct: 492 --HDPDFLKVLQDPYGNYVVQSALHVSKGDLHNTLVEFIQRHYPFLHSHLFGKKVLARTK 551

Query: 182 RDKKKSKL 189
             K + +L
Sbjct: 552 WRKNRLRL 553

[Close]

BLAST of PI0018478 vs. NCBI nr
Match: KAE8645845.1 (hypothetical protein Csa_017253 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 6.3e-86
Identity = 158/190 (83.16%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           +LI+LRVAQNCLELAR QA CCILQ+CIEYSNNN RQL+E LISPLI+D +DLSKHPYGN
Sbjct: 64  ELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 123

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEG 121
           YVIQFMIQLDGTNIG RIIK+LTHKFVELSMDKYGSNVVEKCLSCCEG+SNDIIFEILEG
Sbjct: 124 YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 183

Query: 122 NHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKR 181
           N +D+LIQICTNQYGN+VVQT MSIAKGK  KLLEKAIK HWL L  + YGRNVISS +R
Sbjct: 184 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 243

Query: 182 DKKKSKLLEY 192
           DKKK+KL +Y
Sbjct: 244 DKKKAKLSKY 253

[Close]

BLAST of PI0018478 vs. NCBI nr
Match: XP_008455521.1 (PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-48
Identity = 94/103 (91.26%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           +LILLRVAQNCLELAR+QAGCCILQ+CIEYSNNNFRQLRE LI+PLIEDA+DLSKHPYGN
Sbjct: 146 ELILLRVAQNCLELAREQAGCCILQECIEYSNNNFRQLREVLITPLIEDAYDLSKHPYGN 205

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCL 105
           YVIQFMIQLDGTNIGWR+IK+LTHKFVELSMDKYGSNVVEKC+
Sbjct: 206 YVIQFMIQLDGTNIGWRVIKELTHKFVELSMDKYGSNVVEKCV 248

[Close]

BLAST of PI0018478 vs. NCBI nr
Match: XP_022148742.1 (pumilio homolog 12-like [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 3.9e-43
Identity = 95/187 (50.80%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           ++ILL +A N LELA+D+ GCCIL  CI Y+      LR  L++PLI++A  LS H Y N
Sbjct: 255 EMILLEIAHNSLELAKDKNGCCILPFCILYAEGT---LRGVLVTPLIQEARHLSTHFYAN 314

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEG 121
           +VIQF+I+LD  NIG R+I+ L +KFVEL + K GS+VVEKCL C E  +  IIFEI+E 
Sbjct: 315 FVIQFLIELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME- 374

Query: 122 NHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKR 181
            +++  IQ+ TNQYGNYV Q A+S+AKG+ + LL +AIK     L  +PYGR+V+++A +
Sbjct: 375 -NKENWIQVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAVK 434

Query: 182 DKKKSKL 189
            K++S +
Sbjct: 435 RKRRSSI 436

[Close]

BLAST of PI0018478 vs. NCBI nr
Match: XP_031126758.1 (putative pumilio homolog 8, chloroplastic [Ipomoea triloba])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-31
Identity = 76/183 (41.53%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 4   ILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYV 63
           IL  +A NCL++A D++GCC+LQ C+E ++    Q RE L++ +  ++  LS+HPYGNYV
Sbjct: 364 ILSVIADNCLDIATDKSGCCVLQHCVENADG---QSRERLVAEITANSIVLSEHPYGNYV 423

Query: 64  IQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEG-VSNDIIFEILEGN 123
           +Q ++ L   ++   I+KQL   FV LSM+KYGSNVVEKCL   E   +  ++ EI+   
Sbjct: 424 VQNIVGLKIAHVTSEILKQLQGSFVSLSMNKYGSNVVEKCLKESENEQAMQVVEEIISSP 483

Query: 124 HQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRD 183
           +   L+Q   +QYGNYV Q+A++I KG T   +   I  H+  LH +PYG+ V++  + +
Sbjct: 484 NFLMLLQ---DQYGNYVAQSALAICKGSTRHAMVNLINMHYNYLHSHPYGKRVLAKTRGN 540

Query: 184 KKK 186
           K++
Sbjct: 544 KQQ 540

[Close]

BLAST of PI0018478 vs. NCBI nr
Match: XP_019165477.1 (PREDICTED: pumilio homolog 12-like [Ipomoea nil])

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-31
Identity = 76/183 (41.53%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 4   ILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYV 63
           IL  +A NCL++A D++GCC+LQ C+E ++    Q RE L++ +  ++  LS+HPYGNYV
Sbjct: 367 ILSVIADNCLDIATDKSGCCVLQHCVENADG---QSRERLVAEITANSIVLSEHPYGNYV 426

Query: 64  IQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEG-VSNDIIFEILEGN 123
           +Q ++ L   ++   I+KQL   FV LSM+KYGSNVVEKCL   E   +  ++ EI+   
Sbjct: 427 VQNILGLKIPHVTSEILKQLQGSFVSLSMNKYGSNVVEKCLKESENEQAMQVVEEIISSP 486

Query: 124 HQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRD 183
           +   L+Q   +QYGNYV Q+A++I KG T   +   I  H+  LH +PYG+ V++  + +
Sbjct: 487 NFLMLLQ---DQYGNYVAQSALAICKGSTRHAMVNLINMHYNYLHSHPYGKRVLAKTRGN 543

Query: 184 KKK 186
           K++
Sbjct: 547 KQQ 543

[Close]

BLAST of PI0018478 vs. TAIR 10
Match: AT5G56510.1 (pumilio 12 )

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-30
Identity = 69/173 (39.88%), Postives = 103/173 (59.54%), Query Frame = 0


Query: 11  NCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQL 70
           +C+ELA D+ GCC+LQ C+ YS     + ++ L+S +  +A  LS+ P+GNYV+Q++ +L
Sbjct: 429 HCVELATDRHGCCVLQKCLGYSEG---EQKQHLVSEIASNALLLSQDPFGNYVLQYVFEL 488

Query: 71  DGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQI 130
                 + I++QL   + ELSM K  SNVVEKCL   +      I  I E  +  +L Q+
Sbjct: 489 QLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARI--IRELINYGRLDQV 548

Query: 131 CTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVISSAKRDK 184
             + YGNYV+Q A+  +KG  H LL  AIK +  +L  NPYG+ V+S+    K
Sbjct: 549 MLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596

[Close]

BLAST of PI0018478 vs. TAIR 10
Match: AT1G78160.1 (pumilio 7 )

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 63/166 (37.95%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 12  CLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQLD 71
           C E+A  + GCC+LQ CI YS    RQ RE LI+ +  ++  L++ P+GNY +QF+I+L 
Sbjct: 486 CTEIATHRHGCCVLQKCIAYS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELR 545

Query: 72  GTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQIC 131
             +    ++ QL   +V+LSM K+ S++VE+CL  C      I+ E++   H DQL+Q  
Sbjct: 546 IPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQ-- 605

Query: 132 TNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVIS 178
            + Y N+V+Q A++  KG  H  L + I+ H + L  NPY + + S
Sbjct: 606 -DPYANFVIQAALAATKGPLHASLVEVIRPHSI-LRNNPYCKRIFS 644

[Close]

BLAST of PI0018478 vs. TAIR 10
Match: AT1G22240.1 (pumilio 8 )

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-26
Identity = 60/166 (36.14%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 12  CLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFMIQLD 71
           C+++A  + GCC+LQ CI YS+      RE L++ +  ++  L++ PYGNY +QF+++L 
Sbjct: 351 CIDIATHRHGCCVLQKCIAYSSG---LQREKLVTEISRNSLFLAQDPYGNYAVQFVLELR 410

Query: 72  GTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQLIQIC 131
             +    ++ QL   +VELSM K+ S++VE+CL+ C      I+ E++   H D LIQ  
Sbjct: 411 DFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQ-- 470

Query: 132 TNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVIS 178
            + Y N+V+Q A+++ KG  H  L + I+ H + L  NPY + + S
Sbjct: 471 -DPYANFVIQAALAVTKGSLHATLVEVIRPHSI-LRNNPYCKRIFS 509

[Close]

BLAST of PI0018478 vs. TAIR 10
Match: AT5G43090.1 (pumilio 13 )

HSP 1 Score: 111.3 bits (277), Expect = 8.6e-25
Identity = 55/169 (32.54%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 8   VAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGNYVIQFM 67
           V+Q+C ++A DQ GCC+LQ C +       ++R+ LIS +IE A  L  + +GNYV+Q++
Sbjct: 359 VSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYV 418

Query: 68  IQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEGNHQDQL 127
           ++LD  +    ++ +L   +  L+ +KYGS+VV+K L      S  I+ ++L G     +
Sbjct: 419 VELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSKLIVVDLLRG-----I 478

Query: 128 IQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVI 177
             +  + +GNYV+QTA  ++K    ++L   I+R+   + CN +G  ++
Sbjct: 479 DTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKIL 522

[Close]

BLAST of PI0018478 vs. TAIR 10
Match: AT5G43110.1 (pumilio 14 )

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-23
Identity = 55/175 (31.43%), Postives = 99/175 (56.57%), Query Frame = 0


Query: 2   QLILLRVAQNCLELARDQAGCCILQDCIEYSNNNFRQLREFLISPLIEDAHDLSKHPYGN 61
           +L+L  + QNC ++A DQ GCC+LQ C         ++R+ LI   I +A  L  + YGN
Sbjct: 344 RLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGN 403

Query: 62  YVIQFMIQLDGTNIGWRIIKQLTHKFVELSMDKYGSNVVEKCLSCCEGVSNDIIFEILEG 121
           YV+Q++++L+   +   +++QL   +  L+ +KYGS+ V+K L      S  I+ ++L  
Sbjct: 404 YVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRVIVIDLLR- 463

Query: 122 NHQDQLIQICTNQYGNYVVQTAMSIAKGKTHKLLEKAIKRHWLALHCNPYGRNVI 177
               ++  +  + +GNYV+QTA  ++K    ++L   I+R+   + CN +G  V+
Sbjct: 464 ----EIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNIPMMRCNKFGNKVL 513

The following BLAST results are available for this feature:

BLAST of PI0018478 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC3	7.4e-29	39.88	Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2	[more]
Q9C9R6	2.2e-25	37.95	Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU...	[more]
Q9LM20	3.8e-25	36.14	Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU...	[more]
P0DN95	1.4e-24	37.28	Pumilio homolog 15 OS=Arabidopsis thaliana OX=3702 GN=APUM15 PE=3 SV=1	[more]
Q9FMH4	1.2e-23	32.54	Putative pumilio homolog 13 OS=Arabidopsis thaliana OX=3702 GN=APUM13 PE=3 SV=1	[more]

BLAST of PI0018478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S4	3.6e-87	83.77	PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4...	[more]
A0A1S3C139	8.7e-49	91.26	putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349567...	[more]
A0A6J1D5W5	1.9e-43	50.80	pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1	[more]
A0A1D1XXP3	3.3e-32	46.24	Pumilio 12 OS=Anthurium amnicola OX=1678845 GN=APUM12_0 PE=4 SV=1	[more]
A0A6P5XBS2	6.3e-31	38.30	putative pumilio homolog 8, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111...	[more]

BLAST of PI0018478 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645845.1	6.3e-86	83.16	hypothetical protein Csa_017253 [Cucumis sativus]	[more]
XP_008455521.1	1.8e-48	91.26	PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo]	[more]
XP_022148742.1	3.9e-43	50.80	pumilio homolog 12-like [Momordica charantia]	[more]
XP_031126758.1	1.2e-31	41.53	putative pumilio homolog 8, chloroplastic [Ipomoea triloba]	[more]
XP_019165477.1	2.0e-31	41.53	PREDICTED: pumilio homolog 12-like [Ipomoea nil]	[more]

BLAST of PI0018478 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56510.1	5.2e-30	39.88	pumilio 12	[more]
AT1G78160.1	1.6e-26	37.95	pumilio 7	[more]
AT1G22240.1	2.7e-26	36.14	pumilio 8	[more]
AT5G43090.1	8.6e-25	32.54	pumilio 13	[more]
AT5G43110.1	6.2e-23	31.43	pumilio 14	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001313	Pumilio RNA-binding repeat	SMART	SM00025	pum_5	coord: 122..156 e-value: 6.4 score: 14.3 coord: 7..44 e-value: 1.3 score: 18.0 coord: 46..81 e-value: 3.1 score: 16.7 coord: 82..117 e-value: 3.2E-4 score: 30.0
IPR001313	Pumilio RNA-binding repeat	PFAM	PF00806	PUF	coord: 11..38 e-value: 2.2E-6 score: 27.2 coord: 87..117 e-value: 1.5E-8 score: 34.2 coord: 53..68 e-value: 3.0E-4 score: 20.4 coord: 127..143 e-value: 0.0015 score: 18.2
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 46..81 score: 7.847311
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 122..157 score: 8.477259
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 82..117 score: 10.040462
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 7..45 score: 8.523921
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..189 e-value: 4.6E-49 score: 169.2
None	No IPR available	PANTHER	PTHR12537:SF147	PUMILIO HOMOLOG 12	coord: 9..180
None	No IPR available	PANTHER	PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	coord: 9..180
IPR033133	Pumilio homology domain	PROSITE	PS50303	PUM_HD	coord: 1..183 score: 39.543987
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018478.1	PI0018478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006417	regulation of translation
molecular_function	GO:0003723	RNA binding