PI0018280 (gene) Melon (PI 482460) v1

Overview


Name	PI0018280
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transmembrane protein
Location	chr02: 18323576 .. 18323821 (-)
RNA-Seq Expression	PI0018280
Synteny	PI0018280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGACGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACGAGGTAA

mRNA sequence

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGACGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACGAGGTAA

Coding sequence (CDS)

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGACGAATTCTCGGTTGACTTGCTGCCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCTTGTTTAAGAGTAATAGTGACGCCAAGAAAGAAATGGGGTCGCAATTTAAGTCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTTTGTTTCTTTGTGCTTTAATCCTCTGGGTTTGTTCAACGAGGTAA

Protein sequence

MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENAVHLIPLTLFLCALILWVCSTR

Homology

[Close]

BLAST of PI0018280 vs. ExPASy TrEMBL
Match: A0A0A0LTP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          M+RSSSTSRSF+EFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61 VHLIPLTLFLCALILWVCSTR 82
          VHLIPLTLFLCALILWVCSTR
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of PI0018280 vs. ExPASy TrEMBL
Match: A0A5A7TZH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00330 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          M+RSSSTSRSFDEFSVDLLPDSISSPPLKNEAS VLPLFKSNSDAKKEMG QFKSPG NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLTLFLCALILWVCSTR 82
          VHLIPLTLFLCALILWVCSTR
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of PI0018280 vs. ExPASy TrEMBL
Match: A0A438EIF2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          M+RS+STSR+ DEF V+LLP ++ S PLK  AS  LP++   SDA KKEM    KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 80
          A+HLIPL L LCALILWV S
Sbjct: 61 AIHLIPLLLILCALILWVFS 80

[Close]

BLAST of PI0018280 vs. ExPASy TrEMBL
Match: A0A059CNE3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01116 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.5e-14
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSD--AKKEMGSQFKSPGE 60
          MHR SS SR  DEF V+LLP S +   L+N ++  LPLF+  S    KKE G+  +SPGE
Sbjct: 1  MHRLSSGSRDSDEFLVNLLPASAALSALRNSSANDLPLFRQPSSDLTKKESGAHLRSPGE 60

Query: 61 NAVHLIPLTLFLCALILWVCS 80
           A+HLIP+ LFLCAL LW+CS
Sbjct: 61 KAIHLIPVVLFLCALTLWLCS 81

[Close]

BLAST of PI0018280 vs. ExPASy TrEMBL
Match: A0A067KJC2 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          MHRSSSTSR+ DE SV+   D     P+K  +S  LP++KS+SDA KKE+G   KS GEN
Sbjct: 1  MHRSSSTSRAADELSVNFSSDDNIVSPVKTLSSTDLPIYKSSSDASKKEIGLHQKSVGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 80
          AVHLIPL L LCALILW+ S
Sbjct: 61 AVHLIPLILLLCALILWLFS 80

[Close]

BLAST of PI0018280 vs. NCBI nr
Match: KAE8653076.1 (hypothetical protein Csa_019861 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          M+RSSSTSRSF+EFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61 VHLIPLTLFLCALILWVCST 81
          VHLIPLTLFLCALILWVCST
Sbjct: 61 VHLIPLTLFLCALILWVCST 80

[Close]

BLAST of PI0018280 vs. NCBI nr
Match: KAA0046741.1 (hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK14518.1 hypothetical protein E5676_scaffold15G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60
          M+RSSSTSRSFDEFSVDLLPDSISSPPLKNEAS VLPLFKSNSDAKKEMG QFKSPG NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLTLFLCALILWVCSTR 82
          VHLIPLTLFLCALILWVCSTR
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of PI0018280 vs. NCBI nr
Match: KAG7021797.1 (hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEA-SGVLPLFKSNSDAKKEMGSQFKSPGEN 60
          MHRSSSTSR+FDE+SVD+ P   SSPPLKNEA   +LPLFK ++  KKEMG  FK PG+N
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDT-PKKEMGPHFKPPGQN 60

Query: 61 AVHLIPLTLFLCALILWVCSTR 82
          AVHLIPL L L ALILW+CS+R
Sbjct: 61 AVHLIPLILLLSALILWICSSR 81

[Close]

BLAST of PI0018280 vs. NCBI nr
Match: KAG6587911.1 (hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEA-SGVLPLFKSNSDAKKEMGSQFKSPGEN 60
          MHRSSSTSR+FDE+SVD+ P   SSPPLKNEA   +LPLFK ++  KKEMG  FK PG+N
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDT-PKKEMGPHFKPPGQN 60

Query: 61 AVHLIPLTLFLCALILWVCSTR 82
          AVHLIPL L L ALILW+CS+R
Sbjct: 61 AVHLIPLILLLSALILWICSSR 81

[Close]

BLAST of PI0018280 vs. NCBI nr
Match: RVW47477.1 (hypothetical protein CK203_086512 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60
          M+RS+STSR+ DEF V+LLP ++ S PLK  AS  LP++   SDA KKEM    KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 80
          A+HLIPL L LCALILWV S
Sbjct: 61 AIHLIPLLLILCALILWVFS 80

[Close]

BLAST of PI0018280 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   D+ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of PI0018280 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   D+ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of PI0018280 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASG-----VLPLFKSNSDAKKEMGSQFKS 60
          M RS+S S   D+ S +    S S P +K  A       +LP +  NS   K+  S+F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 PGENAVHLIPLTLFLCALILWVCS 80
            ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 -AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of PI0018280 vs. TAIR 10
Match: AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLL--PDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGE 60
          M RS+S SR  D F       P S S   ++++   +LP +  NS A K   S+F+   E
Sbjct: 1  MRRSASGSRVLDHFPATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREKSRFRF-SE 60

Query: 61 NAVHLIPLTLFLCALILWVCS 80
          N +HLIPL L LC  ILW+ S
Sbjct: 61 NVIHLIPLILLLCVAILWLSS 80

[Close]

BLAST of PI0018280 vs. TAIR 10
Match: AT5G20045.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEM---GSQFKSP- 60
          M R   +SR  +EF ++L  DS S             L   +  AKKE+    + +KS  
Sbjct: 1  MQRLQISSRPSEEFLINLSVDSASPD----------GLVVYDDIAKKELSLHNNSYKSAN 60

Query: 61 GENAVHLIPLTLFLCALILWVCST 81
          GE A+HLIP+ LFLC  +LWV S+
Sbjct: 61 GERAIHLIPIVLFLCGFMLWVFSS 74

The following BLAST results are available for this feature:

BLAST of PI0018280 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTP3	3.0e-35	97.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1	[more]
A0A5A7TZH0	1.3e-33	95.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438EIF2	5.9e-15	62.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1	[more]
A0A059CNE3	8.5e-14	55.56	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01116 PE=4 SV...	[more]
A0A067KJC2	1.5e-13	61.25	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1	[more]

BLAST of PI0018280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653076.1	3.1e-34	97.50	hypothetical protein Csa_019861 [Cucumis sativus]	[more]
KAA0046741.1	2.6e-33	95.06	hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK1451...	[more]
KAG7021797.1	7.4e-20	69.51	hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587911.1	7.4e-20	69.51	hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RVW47477.1	1.2e-14	62.50	hypothetical protein CK203_086512 [Vitis vinifera]	[more]

BLAST of PI0018280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35658.1	2.0e-07	40.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.2	2.0e-07	40.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	2.0e-07	40.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16840.1	1.0e-06	40.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G20045.1	1.2e-04	38.10	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189:SF10	TRANSMEMBRANE PROTEIN	coord: 1..80
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018280.1	PI0018280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane