PI0018121 (gene) Melon (PI 482460) v1

Overview


Name	PI0018121
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr02: 13781431 .. 13782425 (+)
RNA-Seq Expression	PI0018121
Synteny	PI0018121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGATTCCGCCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGCTTGCTGCCAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCAATTACTGTTCCTTTCTAATTATAAATTGTGTAATTTGTTACCATAACAACACGTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCGTAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGACTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAACATTTTTAGACGTCCCGAACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

mRNA sequence

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGATTCCGCCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGCTTGCTGCCAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCGTAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGACTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAACATTTTTAGACGTCCCGAACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

Coding sequence (CDS)

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGATTCCGCCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGCTTGCTGCCAGGATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCGTAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGACTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAACATTTTTAGACGTCCCGAACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

Protein sequence

MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHNITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVLQDDA

Homology

[Close]

BLAST of PI0018121 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 5.0e-107
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 8.5e-107
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 8.5e-107
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 8.5e-107
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 655

Query: 301 QDD 304
           Q++
Sbjct: 656 QEN 656

[Close]

BLAST of PI0018121 vs. ExPASy TrEMBL
Match: A0A5A7U6Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00120 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 2.1e-105
Identity = 187/303 (61.72%), Postives = 238/303 (78.55%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+S+NGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGG AE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 1.0e-106
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-106
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-106
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 655

Query: 301 QDD 304
           Q++
Sbjct: 656 QEN 656

[Close]

BLAST of PI0018121 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-106
Identity = 189/303 (62.38%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+SDNGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. NCBI nr
Match: KAA0051058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 4.3e-105
Identity = 187/303 (61.72%), Postives = 238/303 (78.55%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHN 60
           M +SSR PKH WTKEE++ LVECLVELV++GGW+S+NGTFRPGY + L RM+A ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITATTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGL 120
           I A+TID RIK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 RNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAQYDGYDVENPTMCSQGL 180
            NK F HYD+L YVFG+DRATGG AE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAEWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEVVRQLQGMPELSRLDRTRCMRILMRSVDDMKTFLDVPNEVKLDYCTVVL 300
           QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMK FL+VP+ +K  YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 301 QDD 304
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0018121 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-12
Identity = 36/131 (27.48%), Postives = 66/131 (50.38%), Query Frame = 0


Query: 12  WTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHNITATTIDCRIK 71
           WT   D  L++ LVE V++G       TF     + +     A+  G       +  R K
Sbjct: 327 WTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQHNKDVLKNRYK 386

Query: 72  TLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNKPFPHYDDL 131
            L+R +  I  +     +GF W+     +IA+ D++++++++HP A+  R K  P Y +L
Sbjct: 387 HLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNL 446

Query: 132 CYVFGRDRATG 143
           C++FG++ + G
Sbjct: 447 CFIFGKETSDG 452

[Close]

BLAST of PI0018121 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 41/146 (28.08%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 6   RAPKHHWTKEEDSALVECLVELVSSGGWKSDNGTF-RPGYHSHLQRMLAARMPGHNITAT 65
           + P + WT +E   L+E + +      W+  +G   +    S L   L  R+ G N    
Sbjct: 11  KGPYNQWTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRL-GCNKNHK 70

Query: 66  TIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNKP 125
               R+K LK  +Q+  +++    SGFGW+ E K   A  +++  ++K+HP  K ++ + 
Sbjct: 71  NYMSRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTES 130

Query: 126 FPHYDDLCYVFGRDRATGGRAETFGD 151
             H++DL  +FG   ATG  A    D
Sbjct: 131 IDHFEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of PI0018121 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-10
Identity = 36/132 (27.27%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 12  WTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHNITA-------- 71
           WT E D   +E +VE V  G            +  HL    A +    + TA        
Sbjct: 14  WTPEMDQYFIELMVEQVRKGN----------RFEDHLFSKRAWKFMSCSFTAKFKFLYGK 73

Query: 72  TTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNK 131
             +  R KTL+  F++++ +      GF W+D  + ++A+  ++D ++K HP ++  R K
Sbjct: 74  DVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIK 133

Query: 132 PFPHYDDLCYVF 136
             P Y DLC V+
Sbjct: 134 SIPCYKDLCLVY 133

[Close]

BLAST of PI0018121 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-10
Identity = 36/132 (27.27%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 12  WTKEEDSALVECLVELVSSGGWKSDNGTFRPGYHSHLQRMLAARMPGHNITA-------- 71
           WT E D   +E +VE V  G            +  HL    A +    + TA        
Sbjct: 14  WTPEMDQYFIELMVEQVRKGN----------RFEDHLFSKRAWKFMSCSFTAKFKFLYGK 73

Query: 72  TTIDCRIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNK 131
             +  R KTL+  F++++ +      GF W+D  + ++A+  ++D ++K HP ++  R K
Sbjct: 74  DVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIK 133

Query: 132 PFPHYDDLCYVF 136
             P Y DLC V+
Sbjct: 134 SIPCYKDLCLVY 133

[Close]

BLAST of PI0018121 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-05
Identity = 17/53 (32.08%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 90  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLRNKPFPHYDDLCYVFGRDRATG 143
           GF W+   + +I +  L+  ++K+HP A+  + KP  ++ DLC ++G   A G
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:

BLAST of PI0018121 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPR5	5.0e-107	62.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	8.5e-107	62.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	8.5e-107	62.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	8.5e-107	62.38	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7U6Z3	2.1e-105	61.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0018121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035621.1	1.0e-106	62.38	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	1.8e-106	62.38	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
ADN34114.1	1.8e-106	62.38	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0057083.1	1.8e-106	62.38	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
KAA0051058.1	4.3e-105	61.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0018121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	7.8e-12	27.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	1.3e-11	28.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	3.3e-10	27.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.3e-10	27.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	4.1e-05	32.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..106 e-value: 3.4E-8 score: 34.3
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..302

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018121.1	PI0018121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding