PI0017984 (gene) Melon (PI 482460) v1

Overview


Name	PI0017984
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr12: 14926242 .. 14926406 (+)
RNA-Seq Expression	PI0017984
Synteny	PI0017984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACACCGATGTAATAGAGGACATCGATGAAGGTGACTCAACATACGCAATGATTGCAGGTGATGACATTCAGTATGTTGAGAGCTCGAACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAGTCAATGGCAATTGCGGAATCAGTAG

mRNA sequence

ATGACAAACACCGATGTAATAGAGGACATCGATGAAGGTGACTCAACATACGCAATGATTGCAGGTGATGACATTCAGTATGTTGAGAGCTCGAACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAGTCAATGGCAATTGCGGAATCAGTAG

Coding sequence (CDS)

ATGACAAACACCGATGTAATAGAGGACATCGATGAAGGTGACTCAACATACGCAATGATTGCAGGTGATGACATTCAGTATGTTGAGAGCTCGAACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAGTCAATGGCAATTGCGGAATCAGTAG

Protein sequence

MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

Homology

[Close]

BLAST of PI0017984 vs. ExPASy TrEMBL
Match: A0A1S3C570 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103496992 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.3e-13
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMFS+W+LRNQ
Sbjct: 251 MTNFDIQDNIDEVDSTHATIATDDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 304

[Close]

BLAST of PI0017984 vs. ExPASy TrEMBL
Match: A0A5D3CX37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00400 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 279 MTNFDIKDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 332

[Close]

BLAST of PI0017984 vs. ExPASy TrEMBL
Match: A0A5A7TCQ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002080 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 279 MTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 332

[Close]

BLAST of PI0017984 vs. ExPASy TrEMBL
Match: A0A1S4E5X8 (uncharacterized protein LOC107992265 OS=Cucumis melo OX=3656 GN=LOC107992265 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 234 MTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 287

[Close]

BLAST of PI0017984 vs. ExPASy TrEMBL
Match: A0A5A7SYE7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001260 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A  A DDI Y+E SNEWS+WRDD AEEMFS+W+LRNQ
Sbjct: 53  MTNFDIQDNIDEVDSTHATTAADDIHYIEMSNEWSQWRDDLAEEMFSEWELRNQ 106

[Close]

BLAST of PI0017984 vs. NCBI nr
Match: XP_031740445.1 (uncharacterized protein LOC116403439 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN   ++D+DEGDSTYA I GDDIQ+VE+SNEW++WRDD A EMF++WQLRN+
Sbjct: 274 MTNVSFVDDVDEGDSTYATIGGDDIQFVENSNEWTQWRDDLAGEMFNEWQLRNE 327

[Close]

BLAST of PI0017984 vs. NCBI nr
Match: XP_008457266.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMFS+W+LRNQ
Sbjct: 251 MTNFDIQDNIDEVDSTHATIATDDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 304

[Close]

BLAST of PI0017984 vs. NCBI nr
Match: XP_016903646.1 (PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 234 MTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 287

[Close]

BLAST of PI0017984 vs. NCBI nr
Match: TYK16035.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 279 MTNFDIKDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 332

[Close]

BLAST of PI0017984 vs. NCBI nr
Match: KAA0041234.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ 55
           MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Sbjct: 279 MTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 332

The following BLAST results are available for this feature:

BLAST of PI0017984 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C570	6.3e-13	70.37	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103496992 PE=3 SV=1	[more]
A0A5D3CX37	8.2e-13	68.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCQ1	8.2e-13	68.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E5X8	8.2e-13	68.52	uncharacterized protein LOC107992265 OS=Cucumis melo OX=3656 GN=LOC107992265 PE=...	[more]
A0A5A7SYE7	2.4e-12	68.52	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0017984 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740445.1	1.2e-13	68.52	uncharacterized protein LOC116403439 [Cucumis sativus]	[more]
XP_008457266.1	1.3e-12	70.37	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
XP_016903646.1	1.7e-12	68.52	PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo]	[more]
TYK16035.1	1.7e-12	68.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041234.1	1.7e-12	68.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0017984 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017984.1	PI0017984.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding