Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAGTGATATCGCACGTCCCATTAGCATCATTCTGGACGGTTCAAATTATATCACCTAGGGTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGTGCATAGTTACTGGCGACATCACCAAGCCTGTCAAACCCACTAAGAATGATGATGTAGATACTACCATTCAAGAGACTACTCCCGAAAATAAGTACATTGAAAGTCTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACCTCTATTCATACACAATTTGATGTTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTGGCACATTATTATCAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTACCACTCTTCAGCCCATATGGACTCAGTTAGATCAGGCAAAAATCAGTCTTGATCATAGCCGTCTCATCAAAGTACTTGTGGGACTCTGTCCAAAGTATGAATCTGTTCGGGCTGCCTTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTTTATGCACTCTAATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGAAAATCTGTCCAACTCGTCCCCCGCGCCCTCCTAGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTTATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCATCCCCTACCCATGTCCAATCCCTTCCACCAATCCATTCTGCTGATGGTAATCAAATGGCTATTTCTCACATTGGAACTGTTCACACACCCACCATCAACCTTTCCCACACTTATCATGTTCCAAATCTAACATTCAACCTAGCCTCTGTTGGCCAATTATGTGACCTTGGACTTAACATTATCTTTTCCTCTAATGGTTGTCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGGAAGGTGGGACGATTATTTGA
mRNA sequence
ATGGAGAAGAGTGATATCGCACGTCCCATTAGCATCATTCTGGACGGGTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGTGCATAGTTACTGGCGACATCACCAAGCCTGTCAAACCCACTAAGAATGATGATGTAGATACTACCATTCAAGAGACTACTCCCGAAAATAAGTACATTGAAAGTCTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACCTCTATTCATACACAATTTGATGTTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTGGCACATTATTATCAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTACCACTCTTCAGCCCATATGGACTCAGTTAGATCAGGCAAAAATCAGTCTTGATCATAGCCGTCTCATCAAAGTACTTGTGGGACTCTGTCCAAAGTATGAATCTGTTCGGGCTGCCTTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTTTATGCACTCTAATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGAAAATCTGTCCAACTCGTCCCCCGCGCCCTCCTAGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTTATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCATCCCCTACCCATGTCCAATCCCTTCCACCAATCCATTCTGCTGATGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGGAAGGTGGGACGATTATTTGA
Coding sequence (CDS)
ATGGAGAAGAGTGATATCGCACGTCCCATTAGCATCATTCTGGACGGGTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGTGCATAGTTACTGGCGACATCACCAAGCCTGTCAAACCCACTAAGAATGATGATGTAGATACTACCATTCAAGAGACTACTCCCGAAAATAAGTACATTGAAAGTCTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACCTCTATTCATACACAATTTGATGTTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTGGCACATTATTATCAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTACCACTCTTCAGCCCATATGGACTCAGTTAGATCAGGCAAAAATCAGTCTTGATCATAGCCGTCTCATCAAAGTACTTGTGGGACTCTGTCCAAAGTATGAATCTGTTCGGGCTGCCTTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTTTATGCACTCTAATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGAAAATCTGTCCAACTCGTCCCCCGCGCCCTCCTAGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTTATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCATCCCCTACCCATGTCCAATCCCTTCCACCAATCCATTCTGCTGATGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGGAAGGTGGGACGATTATTTGA
Protein sequence
MEKSDIARPISIILDGSPNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPENKYIESLEDWDSKNHQIITWLGNTSIHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSSDGPRDWYGTEGGTII
Homology
BLAST of PI0017879 vs. ExPASy TrEMBL
Match:
A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)
HSP 1 Score: 533.9 bits (1374), Expect = 5.5e-148
Identity = 283/372 (76.08%), Postives = 300/372 (80.65%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AKELWDFL TRFQSI
Sbjct: 61 ETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
SVRAA LHRNPLPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 SVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK S +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. ExPASy TrEMBL
Match:
A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)
HSP 1 Score: 531.9 bits (1369), Expect = 2.1e-147
Identity = 282/372 (75.81%), Postives = 299/372 (80.38%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AKELWDFL TRFQSI
Sbjct: 61 ETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
VRAA LHRNPLPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 PVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK S +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. ExPASy TrEMBL
Match:
A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)
HSP 1 Score: 529.3 bits (1362), Expect = 1.4e-146
Identity = 281/372 (75.54%), Postives = 298/372 (80.11%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ EN +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AK+LWDFL TRFQSI
Sbjct: 61 ETSAENIQYIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
VRAA LHRN LPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 FVRAALLHRNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+C+YCHK+GHIL CPTRPPRPP HSHKPK +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS T VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHTPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. ExPASy TrEMBL
Match:
A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)
HSP 1 Score: 516.2 bits (1328), Expect = 1.2e-142
Identity = 277/386 (71.76%), Postives = 303/386 (78.50%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP----------- 60
MEK+ +ARPIS ILDG+ F IGRKLW IVTGDITKPVKP
Sbjct: 1 MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60
Query: 61 TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAK 120
T+++D +T+ + E T E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AK
Sbjct: 61 TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120
Query: 121 ELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHS 180
ELW+FL TRFQSI LAHYYQLHS LV+LNQEVGQSVNEYL T QPIWTQLDQAKIS DH
Sbjct: 121 ELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHI 180
Query: 181 RLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHS 240
RLIKVL+GL +YESVRAA LHRNPLPSLDAAVQEILFEEKRLGI S + S+ ALATTH
Sbjct: 181 RLIKVLMGLRSEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLPSDVALATTHI 240
Query: 241 RPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS 300
R NE +FCK CKL GHK ANCP I+CRYC+K+GHIL CPTRPPRPPSHSHK K S
Sbjct: 241 RQANETSFCKNCKLHGHKFANCPTIECRYCYKRGHILDNCPTRPPRPPSHSHKHKFSHKV 300
Query: 301 GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTS 360
GS SVVAAATS D T S QL DLHDLLKQV+SS STALA T GTSWLLDSACCNHMTS
Sbjct: 301 GSSSVVAAATSSDITEPSSLQLTDLHDLLKQVLSSQSTALAVTPGTSWLLDSACCNHMTS 360
Query: 361 DISLLSSPTHVQSLPPIHSADGSGSS 362
D+SLLSS + VQSLPPIHSADG+ S
Sbjct: 361 DLSLLSSHSPVQSLPPIHSADGNPMS 386
BLAST of PI0017879 vs. ExPASy TrEMBL
Match:
A0A5A7UKE6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00500 PE=4 SV=1)
HSP 1 Score: 493.4 bits (1269), Expect = 8.2e-136
Identity = 269/381 (70.60%), Postives = 292/381 (76.64%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDD 60
MEKSDIARPIS LDGS F IGRKLW IVTGDITKPVKP T +
Sbjct: 1 MEKSDIARPIS-TLDGSNYITWAHQMRSFLIGRKLWHIVTGDITKPVKPIPPVQSTGQNS 60
Query: 61 V---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDF 120
+ D +TT E+ KYIE LEDWD KNHQIITWLGNTS IHTQFD FDTAKELWDF
Sbjct: 61 IEHNDIMDHDTTAEDIKYIERLEDWDRKNHQIITWLGNTSIPVIHTQFDAFDTAKELWDF 120
Query: 121 LSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKV 180
L TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQL+QAKISLDH LIKV
Sbjct: 121 LYTRFQSIGLAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISLDHIHLIKV 180
Query: 181 LVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNE 240
L+GL P+YESV AA LHRNPLPSLD A+Q+ILFEEKRL I S + S+ AL T+ +PT+E
Sbjct: 181 LMGLRPEYESVYAALLHRNPLPSLDVAIQKILFEEKRLDIFSSLPSDVALTTSQLQPTHE 240
Query: 241 VTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV 300
++FCK CKL GH ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK SP +G+ SV
Sbjct: 241 ISFCKNCKLHGHGFANCPTIECRYCHKRGHILDHCPTRPPRPPGHSHKPKFSPKAGTSSV 300
Query: 301 VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLL 360
VAAAT D T +FQL DLHDLLKQVISSNSTALA T GTSWLLD AC NHMTS+ L
Sbjct: 301 VAAATPSDITAPSTFQLTDLHDLLKQVISSNSTALAVTLGTSWLLDLACYNHMTSE---L 360
Query: 361 SSPTHVQSLPPIHSADGSGSS 362
SS VQSLPPIHS G+ S
Sbjct: 361 SSHIPVQSLPPIHSTVGNRMS 377
BLAST of PI0017879 vs. NCBI nr
Match:
KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 533.9 bits (1374), Expect = 1.1e-147
Identity = 283/372 (76.08%), Postives = 300/372 (80.65%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AKELWDFL TRFQSI
Sbjct: 61 ETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
SVRAA LHRNPLPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 SVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK S +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. NCBI nr
Match:
KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 531.9 bits (1369), Expect = 4.3e-147
Identity = 282/372 (75.81%), Postives = 299/372 (80.38%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AKELWDFL TRFQSI
Sbjct: 61 ETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
VRAA LHRNPLPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 PVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK S +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. NCBI nr
Match:
KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 529.3 bits (1362), Expect = 2.8e-146
Identity = 281/372 (75.54%), Postives = 298/372 (80.11%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQ 60
MEK+D+ARPIS ILDG+ F IGRKLW IVTGDITKPVKP +
Sbjct: 1 MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP--------IVH 60
Query: 61 ETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDFLSTRFQSID 120
ET+ EN +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AK+LWDFL TRFQSI
Sbjct: 61 ETSAENIQYIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIG 120
Query: 121 LAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYE 180
LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE
Sbjct: 121 LAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE 180
Query: 181 SVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKL 240
VRAA LHRN LPSLDAAVQEILFEEKRLGI S +HS+ ALATTH R NE FCK CKL
Sbjct: 181 FVRAALLHRNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKL 240
Query: 241 QGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT 300
GHK ANCP I+C+YCHK+GHIL CPTRPPRPP HSHKPK +GS SVVAAATS T
Sbjct: 241 HGHKFANCPTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVVAAATSDIT 300
Query: 301 TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSL 360
PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS T VQSL
Sbjct: 301 EPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHTPVQSL 360
Query: 361 PPIHSADGSGSS 362
PPIHSADG+ S
Sbjct: 361 PPIHSADGNSMS 363
BLAST of PI0017879 vs. NCBI nr
Match:
KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 516.2 bits (1328), Expect = 2.5e-142
Identity = 277/386 (71.76%), Postives = 303/386 (78.50%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP----------- 60
MEK+ +ARPIS ILDG+ F IGRKLW IVTGDITKPVKP
Sbjct: 1 MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60
Query: 61 TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAK 120
T+++D +T+ + E T E+ +YIE LEDWDSKNHQIITWLGNTS IHTQFD FD+AK
Sbjct: 61 TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120
Query: 121 ELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHS 180
ELW+FL TRFQSI LAHYYQLHS LV+LNQEVGQSVNEYL T QPIWTQLDQAKIS DH
Sbjct: 121 ELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHI 180
Query: 181 RLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHS 240
RLIKVL+GL +YESVRAA LHRNPLPSLDAAVQEILFEEKRLGI S + S+ ALATTH
Sbjct: 181 RLIKVLMGLRSEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLPSDVALATTHI 240
Query: 241 RPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS 300
R NE +FCK CKL GHK ANCP I+CRYC+K+GHIL CPTRPPRPPSHSHK K S
Sbjct: 241 RQANETSFCKNCKLHGHKFANCPTIECRYCYKRGHILDNCPTRPPRPPSHSHKHKFSHKV 300
Query: 301 GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTS 360
GS SVVAAATS D T S QL DLHDLLKQV+SS STALA T GTSWLLDSACCNHMTS
Sbjct: 301 GSSSVVAAATSSDITEPSSLQLTDLHDLLKQVLSSQSTALAVTPGTSWLLDSACCNHMTS 360
Query: 361 DISLLSSPTHVQSLPPIHSADGSGSS 362
D+SLLSS + VQSLPPIHSADG+ S
Sbjct: 361 DLSLLSSHSPVQSLPPIHSADGNPMS 386
BLAST of PI0017879 vs. NCBI nr
Match:
KAA0053979.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, catalytic core [Cucumis melo var. makuwa])
HSP 1 Score: 493.4 bits (1269), Expect = 1.7e-135
Identity = 269/381 (70.60%), Postives = 292/381 (76.64%), Query Frame = 0
Query: 1 MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDD 60
MEKSDIARPIS LDGS F IGRKLW IVTGDITKPVKP T +
Sbjct: 1 MEKSDIARPIS-TLDGSNYITWAHQMRSFLIGRKLWHIVTGDITKPVKPIPPVQSTGQNS 60
Query: 61 V---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFDVFDTAKELWDF 120
+ D +TT E+ KYIE LEDWD KNHQIITWLGNTS IHTQFD FDTAKELWDF
Sbjct: 61 IEHNDIMDHDTTAEDIKYIERLEDWDRKNHQIITWLGNTSIPVIHTQFDAFDTAKELWDF 120
Query: 121 LSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKV 180
L TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQL+QAKISLDH LIKV
Sbjct: 121 LYTRFQSIGLAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISLDHIHLIKV 180
Query: 181 LVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNE 240
L+GL P+YESV AA LHRNPLPSLD A+Q+ILFEEKRL I S + S+ AL T+ +PT+E
Sbjct: 181 LMGLRPEYESVYAALLHRNPLPSLDVAIQKILFEEKRLDIFSSLPSDVALTTSQLQPTHE 240
Query: 241 VTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV 300
++FCK CKL GH ANCP I+CRYCHK+GHIL CPTRPPRPP HSHKPK SP +G+ SV
Sbjct: 241 ISFCKNCKLHGHGFANCPTIECRYCHKRGHILDHCPTRPPRPPGHSHKPKFSPKAGTSSV 300
Query: 301 VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLL 360
VAAAT D T +FQL DLHDLLKQVISSNSTALA T GTSWLLD AC NHMTS+ L
Sbjct: 301 VAAATPSDITAPSTFQLTDLHDLLKQVISSNSTALAVTLGTSWLLDLACYNHMTSE---L 360
Query: 361 SSPTHVQSLPPIHSADGSGSS 362
SS VQSLPPIHS G+ S
Sbjct: 361 SSHIPVQSLPPIHSTVGNRMS 377
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DG18 | 5.5e-148 | 76.08 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7SZ66 | 2.1e-147 | 75.81 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7UVX4 | 1.4e-146 | 75.54 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7TXR0 | 1.2e-142 | 71.76 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A5A7UKE6 | 8.2e-136 | 70.60 | Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0043149.1 | 1.1e-147 | 76.08 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0036574.1 | 4.3e-147 | 75.81 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0058316.1 | 2.8e-146 | 75.54 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0047794.1 | 2.5e-142 | 71.76 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| KAA0053979.1 | 1.7e-135 | 70.60 | Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, cata... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
