PI0017866 (gene) Melon (PI 482460) v1

Overview


Name	PI0017866
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Serine/threonine-protein phosphatase 7 long form-like protein
Location	chr09: 9592670 .. 9593952 (-)
RNA-Seq Expression	PI0017866
Synteny	PI0017866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCTGAAGATTTAGTTATTCTTGATCCTGGTAATGTTGGAGATAGTGATATTGATGTAGAGATTGATGAAGTATTCGGTAATGAAAGAAATGTAGAGGAAAAAAATGAAATGATACCCTCCGAGATGTTTGATTTTATGAAATTGTGTATATTTTAGGGTTTTTGTAATTATTAATGAACTACTTTTCTGTAAATGTTTGATTTTGTAGTTTGATGTATACTTTCGGGTTTTTAGGTTATCACTTTTATGTAGTTGAACTTTTCTTTTTCATGTTATTACTGCAATACATACATGTTATTAATGAAACACTTTTTGACAATAATTTGCAGGATGGAACCTGGTCCTGTTGATCCAACTTAGCTATATCTACAGTTGTCCCATCGATCCTAGTCTGTATGGGATAATTCCTCCACAGTTGTTCTGAGTTGTCGGAGGAGGGAGGCAGCATCCCAGCGCACGATCCCCTTCGATCGGCGTATTGTGCCATACTTAGAGGCTGCTGGATTTCTTGATGTTTCCCAGATAGGATTCATGCAGTTGGATTGACACTTAATTACTGCTTTGGTCGAGCGTTTGAGACCAGAGACCCACACATTTCATATGCCTTGTGGGGAATGCACGATCACATTACAGAACGTTGCGATCCAATTGGGGTTATCGGTGGATGGTGAGCCTGTTGTAGGATCGTTATCGTATAACTGGAACCAAGACACGTGAGAATTTCTTGGGAGTTCTACCGTCTTACATGAAAGGTCAACGGTTGAGTCTTCCATGGTTGGCAGAACAATTCACAGAATTTCCACTACATGCTGACATTGTGAGTGTCCAGAGATACGCTCGTGCATAAATTATGCAGCTGATTGGAGGCTTTCTGTTAGCCGATAAATTGAATACCTTGGTCCACTGTATGTTTCTTTCGCTTTTAAGCGATTTCAACCGGGCAAGTACGTATGCATGGGGCACTACATGCCTTGTATGGCTGTATAGGGAATTGTGTTGATCCAGTAATGCACAATCCTAAGAAATAGCTGGTCCCCTAATGCTACTACAAGTATGGGCATATGACAGGTTCCCTATTGTGGCACCACATGTAGTATTACAGACTCCAGTTGGTTGGCCTTTGAATTTCAGGTAAATTTATATATTGTTTTTTAATAAAATTTGCCCTATCTATAACTTATTATTCATTTTTTTCACATTTTAGATGGAGTGGTGTTCTACCTGCATCAGAACAGTCAGCGAATATGTTGTTGATGTATCGACAAATATTTGACTAA

mRNA sequence

ATGCGATCTGAAGATTTAGTTATTCTTGATCCTGGTAATGTTGGAGATAGTGATATTGATGTAGAGATTGATGAAGTATTCGATAGGATTCATGCAGTTGGATTGACACTTAATTACTGCTTTGGTCGAGCGTTTGAGACCAGAGACCCACACATTTCATATGCCTTGTGGGGAATGCACGATCACATTACAGAACGTTGCGATCCAATTGGGGTTATCGGTGGATGGTTCCCTATTGTGGCACCACATGTAGTATTACAGACTCCAGTTGGTTGGCCTTTGAATTTCAGATGGAGTGGTGTTCTACCTGCATCAGAACAGTCAGCGAATATGTTGTTGATGTATCGACAAATATTTGACTAA

Coding sequence (CDS)

ATGCGATCTGAAGATTTAGTTATTCTTGATCCTGGTAATGTTGGAGATAGTGATATTGATGTAGAGATTGATGAAGTATTCGATAGGATTCATGCAGTTGGATTGACACTTAATTACTGCTTTGGTCGAGCGTTTGAGACCAGAGACCCACACATTTCATATGCCTTGTGGGGAATGCACGATCACATTACAGAACGTTGCGATCCAATTGGGGTTATCGGTGGATGGTTCCCTATTGTGGCACCACATGTAGTATTACAGACTCCAGTTGGTTGGCCTTTGAATTTCAGATGGAGTGGTGTTCTACCTGCATCAGAACAGTCAGCGAATATGTTGTTGATGTATCGACAAATATTTGACTAA

Protein sequence

MRSEDLVILDPGNVGDSDIDVEIDEVFDRIHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGWFPIVAPHVVLQTPVGWPLNFRWSGVLPASEQSANMLLMYRQIFD

Homology

[Close]

BLAST of PI0017866 vs. ExPASy TrEMBL
Match: A0A5A7TT22 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00270 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 56/128 (43.75%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 30  IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW------------- 89
           +HAV LT +YC GRA ET+DPHIS+ALWG+HDH    C  + V  GW             
Sbjct: 164 VHAVRLTFDYCIGRALETKDPHISHALWGVHDHAAGCCSAVRVASGWGGSDRIIEETLSC 223

Query: 90  ----------------------FPIVAPHVVLQTPVGWPLNF--RWSGVLPASEQSANML 121
                                 FPIVAP   LQ   G  L+F  RWSG L ASEQ ANM 
Sbjct: 224 ESCTVFRDHGSINATTSLAYNRFPIVAPQRPLQHLDGRLLSFRNRWSGALAASEQPANMF 283

[Close]

BLAST of PI0017866 vs. ExPASy TrEMBL
Match: A0A5D3BEY9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold40647G00010 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 58/193 (30.05%), Postives = 64/193 (33.16%), Query Frame = 0


Query: 30  IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW------------- 89
           +HA  L  NYC GRA ETRDPHISYA+WG+HDH    C  +GV  GW             
Sbjct: 45  VHAARLAFNYCIGRALETRDPHISYAMWGVHDHPAGCCSTVGVASGWRASNRIIKFKELP 104

Query: 90  ------------------------------------------------------------ 121
                                                                       
Sbjct: 105 PDADIVSVQRYARAYIMQLIGGFLFAHKSNTLVHCMFLQFLFDFDQVGTYAWGAATLAWL 164

[Close]

BLAST of PI0017866 vs. ExPASy TrEMBL
Match: A0A5A7SRW3 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001270 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 30 IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW 77
          +HAV L  NYC  RA ETRDPHISYA+WG+HDH T  C  +GV  GW
Sbjct: 45 VHAVRLAFNYCISRALETRDPHISYAMWGVHDHPTRCCSTVGVASGW 91

[Close]

BLAST of PI0017866 vs. ExPASy TrEMBL
Match: A0A5A7TD03 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00890 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 38/65 (58.46%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 60  HDHITERCDPIGVIGGW----FPIVAPHVVLQTPVGWPLNFRWSGVLPASEQSANMLLMY 119
           H    E   P+ ++  W    FPIVAP V LQ  V  PL FRWSGV P SEQSANMLL Y
Sbjct: 226 HAQSLEIAGPLMLLQVWAYDKFPIVAPQVALQALVDRPLGFRWSGVQPKSEQSANMLLTY 285

Query: 120 RQIFD 121
           RQIFD
Sbjct: 286 RQIFD 290

[Close]

BLAST of PI0017866 vs. ExPASy TrEMBL
Match: A0A5D3BQU0 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00870 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 38/65 (58.46%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 60  HDHITERCDPIGVIGGW----FPIVAPHVVLQTPVGWPLNFRWSGVLPASEQSANMLLMY 119
           H    E   P+ ++  W    FPIVAP V LQ  V  PL FRWSGV P SEQSANMLL Y
Sbjct: 226 HAQSLEIAGPLMLLQVWAYDKFPIVAPQVALQALVDRPLGFRWSGVQPKSEQSANMLLTY 285

Query: 120 RQIFD 121
           RQIFD
Sbjct: 286 RQIFD 290

[Close]

BLAST of PI0017866 vs. NCBI nr
Match: KAA0045276.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 56/128 (43.75%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 30  IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW------------- 89
           +HAV LT +YC GRA ET+DPHIS+ALWG+HDH    C  + V  GW             
Sbjct: 164 VHAVRLTFDYCIGRALETKDPHISHALWGVHDHAAGCCSAVRVASGWGGSDRIIEETLSC 223

Query: 90  ----------------------FPIVAPHVVLQTPVGWPLNF--RWSGVLPASEQSANML 121
                                 FPIVAP   LQ   G  L+F  RWSG L ASEQ ANM 
Sbjct: 224 ESCTVFRDHGSINATTSLAYNRFPIVAPQRPLQHLDGRLLSFRNRWSGALAASEQPANMF 283

[Close]

BLAST of PI0017866 vs. NCBI nr
Match: TYJ97697.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 58/193 (30.05%), Postives = 64/193 (33.16%), Query Frame = 0


Query: 30  IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW------------- 89
           +HA  L  NYC GRA ETRDPHISYA+WG+HDH    C  +GV  GW             
Sbjct: 45  VHAARLAFNYCIGRALETRDPHISYAMWGVHDHPAGCCSTVGVASGWRASNRIIKFKELP 104

Query: 90  ------------------------------------------------------------ 121
                                                                       
Sbjct: 105 PDADIVSVQRYARAYIMQLIGGFLFAHKSNTLVHCMFLQFLFDFDQVGTYAWGAATLAWL 164

[Close]

BLAST of PI0017866 vs. NCBI nr
Match: KAA0033660.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 30 IHAVGLTLNYCFGRAFETRDPHISYALWGMHDHITERCDPIGVIGGW 77
          +HAV L  NYC  RA ETRDPHISYA+WG+HDH T  C  +GV  GW
Sbjct: 45 VHAVRLAFNYCISRALETRDPHISYAMWGVHDHPTRCCSTVGVASGW 91

[Close]

BLAST of PI0017866 vs. NCBI nr
Match: XP_011656076.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740838.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740839.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >KAE8648996.1 hypothetical protein Csa_009127 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 65  ERCDPIGVIGGW----FPIVAPHVVLQTPVGWPLNFRWSGVLPASEQSANMLLMYRQIFD 121
           E   P+ ++  W    F IVAP V LQ PV  PL FRWSGVLP SEQS NMLL YRQIFD
Sbjct: 231 EIAGPLMLLQMWAYDRFSIVAPQVALQAPVNRPLGFRWSGVLPTSEQSGNMLLTYRQIFD 290

[Close]

BLAST of PI0017866 vs. NCBI nr
Match: XP_031740840.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 65  ERCDPIGVIGGW----FPIVAPHVVLQTPVGWPLNFRWSGVLPASEQSANMLLMYRQIFD 121
           E   P+ ++  W    F IVAP V LQ PV  PL FRWSGVLP SEQS NMLL YRQIFD
Sbjct: 164 EIAGPLMLLQMWAYDRFSIVAPQVALQAPVNRPLGFRWSGVLPTSEQSGNMLLTYRQIFD 223

The following BLAST results are available for this feature:

BLAST of PI0017866 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TT22	5.0e-18	43.75	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BEY9	2.0e-14	30.05	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SRW3	2.0e-11	63.83	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7TD03	1.1e-09	58.46	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5D3BQU0	1.1e-09	58.46	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]

BLAST of PI0017866 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045276.1	1.0e-17	43.75	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYJ97697.1	4.0e-14	30.05	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0033660.1	4.2e-11	63.83	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
XP_011656076.1	1.3e-09	61.67	serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sat...	[more]
XP_031740840.1	1.3e-09	61.67	serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sat...	[more]

BLAST of PI0017866 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017866.1	PI0017866.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development