PI0017841 (gene) Melon (PI 482460) v1

Overview
NamePI0017841
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionLate embryogenesis abundant protein
Locationchr07: 5718364 .. 5719093 (+)
RNA-Seq ExpressionPI0017841
SyntenyPI0017841
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAGTAAGAGCCTTCTTCAACTCAGCCATCAACTAATTCTTTTCTTCTGTTTATGATTCTGTTTTTCTACAAGAAAGCAGTTGTTAAGAACATCAGAAAACCTTATTCTGTCTTAGATCAATGACAAGATAATGCTGAAACAAAACCAAAAACAGTATCGGAACCAAAGTCAATTAGGTTTCATTTGGAATACGGTAGTTGGCTGGTTCAATTAGTACATTGTTTAAATTTGTATTAACTTGAGATGTAAAACACAACACATGGAATAACAAGACAGAACGTTACCTTGTTCTTCTGATTCTGATTCGGTTACATTCTTTGGCAGACCAATCGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTGGGGGGTGAAGCAATTCCCTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTCGACAGCATTCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAAAAGGGTGTTTAACATTGGCCTGTTGCTCCATCCAGATTACCTTATTGCTTCTGAATTCACAAAAAGCAAACAGAGCCAAGCGTTTTTGTTGTTAAACCGATGA

mRNA sequence

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCAATCGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTGGGGGGTGAAGCAATTCCCTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTCGACAGCATTCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAAAAGGGTGTTTAACATTGGCCTGTTGCTCCATCCAGATTACCTTATTGCTTCTGAATTCACAAAAAGCAAACAGAGCCAAGCGTTTTTGTTGTTAAACCGATGA

Coding sequence (CDS)

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCAATCGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTGGGGGGTGAAGCAATTCCCTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTCGACAGCATTCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAAAAGGGTGTTTAACATTGGCCTGTTGCTCCATCCAGATTACCTTATTGCTTCTGAATTCACAAAAAGCAAACAGAGCCAAGCGTTTTTGTTGTTAAACCGATGA

Protein sequence

MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPWVLDGRTGIYYPKGHEKVLDSIPMAVGLQLTPRSTGLTMKTSKRVFNIGLLLHPDYLIASEFTKSKQSQAFLLLNR
Homology
BLAST of PI0017841 vs. ExPASy TrEMBL
Match: A0A1S3BTQ2 (uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEA PW
Sbjct: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          VLDGRTGIYYPKGHEKVLD IP
Sbjct: 61 VLDGRTGIYYPKGHEKVLDGIP 82

BLAST of PI0017841 vs. ExPASy TrEMBL
Match: A0A0A0KX78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE  PW
Sbjct: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          VLDGRTGIYYPKGHEKVL+SIP
Sbjct: 61 VLDGRTGIYYPKGHEKVLNSIP 82

BLAST of PI0017841 vs. ExPASy TrEMBL
Match: A0A6J1C4X8 (uncharacterized protein LOC111008306 OS=Momordica charantia OX=3673 GN=LOC111008306 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKE+KSN+SHV GEA PW
Sbjct: 1  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKEVKSNKSHVTGEATPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          +LD RTGIYYPKGHEKVL+SIP
Sbjct: 61 MLDVRTGIYYPKGHEKVLESIP 82

BLAST of PI0017841 vs. ExPASy TrEMBL
Match: A0A6J1EYH0 (uncharacterized protein LOC111437581 OS=Cucurbita moschata OX=3662 GN=LOC111437581 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE  PW
Sbjct: 1  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIPMAVG 87
          VLDGRTGIYYPKGHE VL+SIP   G
Sbjct: 61 VLDGRTGIYYPKGHENVLESIPNGGG 86

BLAST of PI0017841 vs. ExPASy TrEMBL
Match: A0A6J1J914 (uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.1e-33
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
           MATAFVRGA +MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE  PW
Sbjct: 34  MATAFVRGAQSMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93

Query: 61  VLDGRTGIYYPKGHEKVLDSIPMAVG 87
           VLDGRTGIYYPKGHE VL+SIP   G
Sbjct: 94  VLDGRTGIYYPKGHENVLESIPNGGG 119

BLAST of PI0017841 vs. NCBI nr
Match: XP_008451903.1 (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEA PW
Sbjct: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          VLDGRTGIYYPKGHEKVLD IP
Sbjct: 61 VLDGRTGIYYPKGHEKVLDGIP 82

BLAST of PI0017841 vs. NCBI nr
Match: XP_004148978.1 (uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical protein Csa_014649 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE  PW
Sbjct: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          VLDGRTGIYYPKGHEKVL+SIP
Sbjct: 61 VLDGRTGIYYPKGHEKVLNSIP 82

BLAST of PI0017841 vs. NCBI nr
Match: XP_038884831.1 (uncharacterized protein LOC120075477 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-35
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAF RGA TMNSMFFKPIGRKGFHRKSSSPDM+RERVETESKE+KSN+SHVGGEA PW
Sbjct: 1  MATAFGRGAQTMNSMFFKPIGRKGFHRKSSSPDMIRERVETESKEMKSNKSHVGGEATPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          VLDGRTGIYYPKGHEKVL+SIP
Sbjct: 61 VLDGRTGIYYPKGHEKVLESIP 82

BLAST of PI0017841 vs. NCBI nr
Match: XP_022136654.1 (uncharacterized protein LOC111008306 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKE+KSN+SHV GEA PW
Sbjct: 1  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKEVKSNKSHVTGEATPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIP 83
          +LD RTGIYYPKGHEKVL+SIP
Sbjct: 61 MLDVRTGIYYPKGHEKVLESIP 82

BLAST of PI0017841 vs. NCBI nr
Match: XP_022931383.1 (uncharacterized protein LOC111437581 [Cucurbita moschata] >KAG7015118.1 hypothetical protein SDJN02_22751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEAIPW 60
          MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE  PW
Sbjct: 1  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 60

Query: 61 VLDGRTGIYYPKGHEKVLDSIPMAVG 87
          VLDGRTGIYYPKGHE VL+SIP   G
Sbjct: 61 VLDGRTGIYYPKGHENVLESIPNGGG 86

BLAST of PI0017841 vs. TAIR 10
Match: AT1G73120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 7  RGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETE----SKELKSNQSHVG-GE----A 66
          RGA TMN+MF KP+ RK  H+KS+S D++R+ V+TE     +E+K+ +   G GE    A
Sbjct: 9  RGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPA 68

Query: 67 IPWVLDGRTGIYYPKGHEKVLDSIP 83
            WV    TGIYYPKG EKV+  +P
Sbjct: 69 SSWVPHEGTGIYYPKGQEKVMQDVP 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BTQ22.8e-3897.56uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=... [more]
A0A0A0KX781.1e-3796.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1[more]
A0A6J1C4X83.3e-3490.24uncharacterized protein LOC111008306 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1EYH07.3e-3487.21uncharacterized protein LOC111437581 OS=Cucurbita moschata OX=3662 GN=LOC1114375... [more]
A0A6J1J9142.1e-3386.05uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845... [more]
Match NameE-valueIdentityDescription
XP_008451903.15.9e-3897.56PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo][more]
XP_004148978.12.2e-3796.34uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical ... [more]
XP_038884831.14.7e-3591.46uncharacterized protein LOC120075477 [Benincasa hispida][more]
XP_022136654.16.7e-3490.24uncharacterized protein LOC111008306 [Momordica charantia][more]
XP_022931383.11.5e-3387.21uncharacterized protein LOC111437581 [Cucurbita moschata] >KAG7015118.1 hypothet... [more]
Match NameE-valueIdentityDescription
AT1G73120.12.4e-1348.24unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 16..80
e-value: 2.0E-4
score: 22.0
NoneNo IPR availablePANTHERPTHR35109GLUTAMATE RACEMASEcoord: 2..85
NoneNo IPR availablePANTHERPTHR35109:SF2BNAA02G16300D PROTEINcoord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017841.1PI0017841.1mRNA