PI0017666 (gene) Melon (PI 482460) v1

Overview
NamePI0017666
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr06: 14377270 .. 14378032 (-)
RNA-Seq ExpressionPI0017666
SyntenyPI0017666
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCGGCACCCAACCTCTACAACTTCAACCTAGGGATCAAGCCTGTAATGGTTCAAATGATTCAGAACGCCGGACAATTTGGCGGTCACCCTGGAGAAGATCCACACGAGCACATTAGGAGTTTCTACTTTATCTGTGCTTCCTTCCATATGCCAGGCATTTCACCTAAAGAACTGAGATTCGCACTCTTCCCATTAACTCTAAGGGACGAGGCGAAGAGGTGGGCCAACGCCTTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAAGAAATTATTCCCACCTCACGAAAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCAGCAGAAAGATAAAGAGAACTATATGATGCGTGGAGTAGGTTCAAGAGGATGGTGAAAGCATGCCCCACAATGGCATTCTCGAATGCATATTGATGGAGGTCTTTTATTTTGGTTTGAACAAGGCTACACAACAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCGACGTTGGATACAATGCTAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCACCGAGGAGGACGAGGAAGAAGCGATGAAGGTCTGGATAAGAACGTCGTGGTGGCGTTGTAGGGACAAATGA

mRNA sequence

ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCGGCACCCAACCTCTACAACTTCAACCTAGGGATCAAGCCTGTAATGGTTCAAATGATTCAGAACGCCGGACAATTTGGCGGTCACCCTGGAGAAGATCCACACGAGCACATTAGGAGTTTCTACTTTATCTGTGCTTCCTTCCATATGCCAGGCATTTCACCTAAAGAACTGAGATTCGCACTCTTCCCATTAACTCTAAGGGACGAGGCGAAGAGGTGGGCCAACGCCTTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAAGAAATTATTCCCACCTCACGAAAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCAGCAGAAAGATAAAGAGAACTATATGATGCGTGGAGCTACACAACAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCGACGTTGGATACAATGCTAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCACCGAGGAGGACGAGGAAGAAGCGATGAAGGTCTGGATAAGAACGTCGTGGTGGCGTTGTAGGGACAAATGA

Coding sequence (CDS)

ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCGGCACCCAACCTCTACAACTTCAACCTAGGGATCAAGCCTGTAATGGTTCAAATGATTCAGAACGCCGGACAATTTGGCGGTCACCCTGGAGAAGATCCACACGAGCACATTAGGAGTTTCTACTTTATCTGTGCTTCCTTCCATATGCCAGGCATTTCACCTAAAGAACTGAGATTCGCACTCTTCCCATTAACTCTAAGGGACGAGGCGAAGAGGTGGGCCAACGCCTTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAAGAAATTATTCCCACCTCACGAAAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCAGCAGAAAGATAAAGAGAACTATATGATGCGTGGAGCTACACAACAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCGACGTTGGATACAATGCTAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCACCGAGGAGGACGAGGAAGAAGCGATGAAGGTCTGGATAAGAACGTCGTGGTGGCGTTGTAGGGACAAATGA

Protein sequence

MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGIKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYMMRGATQQTADAVFVGGMLKSSYNQIKATLDTMLAITKNGMKMISAITEEDEEEAMKVWIRTSWWRCRDK
Homology
BLAST of PI0017666 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.9e-28
Identity = 71/153 (46.41%), Postives = 87/153 (56.86%), Query Frame = 0

Query: 13  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFG 72
           A Q  N   +A D  R IR YAAP     N GI            KPVM QM+Q  GQF 
Sbjct: 6   AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFS 65

Query: 73  GHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWD 132
           G P EDPH H+RSF  +  SF + G+S + LR  LFP +LRD A+ W N L    V  W+
Sbjct: 66  GMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWN 125

Query: 133 QLIEKFMKKLFPPHENARRRKELMSFQQKDKEN 154
            L EKF++K FPP  NA+ R E+MSFQQ + E+
Sbjct: 126 DLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDES 158

BLAST of PI0017666 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 4   NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLG-------------IKPVMV 63
           NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY+FN G             IK VM+
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 64  QMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPL 99
           Q+IQNAGQF  HP +DPH++IR+FY ICASFHMPGIS +ELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0017666 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 81/228 (35.53%), Postives = 107/228 (46.93%), Query Frame = 0

Query: 3   NNNRNAPPPQAAQE---PNAAYMAHDLDRPIRSYAAPNLYNFN------------LGIKP 62
           N     P   A QE    NA  +A D +R IR+YA P +   N              +KP
Sbjct: 13  NQEFENPVMMANQERIIANAIQLADDRERAIRAYAHPAVDELNPCIIRPEMQATTFELKP 72

Query: 63  VMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRW 122
           VM QM+Q  GQF G P EDPH H++SF  +  SF   G+    +R +LFP +LRD AK W
Sbjct: 73  VMFQMLQTIGQFHGLPSEDPHLHLKSFLGVSDSFRFQGVDKDVIRLSLFPYSLRDGAKSW 132

Query: 123 ANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENY---------MMRG 182
            N L    + +W+ L EKF+ K FPP  NAR R E+++FQQ + E           M+R 
Sbjct: 133 LNTLAPRTIDSWNSLAEKFLIKYFPPTRNARFRNEIVAFQQFEDETLSEAWERFKEMLRK 192

Query: 183 ---------------------ATQQTADAVFVGGMLKSSYNQIKATLD 186
                                AT+Q  DA   G ML  +YN+    L+
Sbjct: 193 CPHHGLPHCIQMETFYNGLNIATKQVVDASANGAMLSKTYNEAYEILE 240

BLAST of PI0017666 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 0

Query: 16  EPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHP 75
           E N   MA + D  +R YAA    NF+ GI            KP+M QM+Q  G FGG  
Sbjct: 80  EFNYIQMADNRDVAMREYAATAFQNFDSGIVNPIPAHXNFELKPMMFQMLQTIGHFGGQE 139

Query: 76  GEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLI 135
            EDPH+H++SF  I  +F +PGI+       LFP +L+D+A+   NA   G + TW  L+
Sbjct: 140 HEDPHDHLKSFIQIANAFRLPGITDDAXXLTLFPFSLKDQARXXLNAFPXGSITTWGSLV 199

Query: 136 EKFMKKLFPPHENARRRKELMSFQQKDKE 153
           EKF+ K FPP  +A  R+E++SF+Q D+E
Sbjct: 200 EKFLTKFFPPTRHADIREEIISFRQYDRE 228

BLAST of PI0017666 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 0

Query: 17  PNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPG 76
           PN  ++A   DR +R YAA  L + N  +            KP+M+QM+ N GQFGG   
Sbjct: 7   PNPIHVADQRDRAMRDYAAXILEDLNSSVINSFPADAKFEFKPMMLQMLNNIGQFGGLEH 66

Query: 77  EDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIE 136
           EDP  H++SF  +  +F +PGIS   LR  LFP ++  +A  W NA     + TW  +++
Sbjct: 67  EDPRSHLKSFIKVANTFRLPGISDDALRLTLFPFSVSGQATAWLNAFPSDTITTWSDMVD 126

Query: 137 KFMKKLFPPHENARRRKELMSFQQKDKE 153
           KF+ K FPP  NA  R+E++SF+QK+ E
Sbjct: 127 KFLVKYFPPTRNADVREEIISFRQKENE 154

BLAST of PI0017666 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-38
Identity = 90/224 (40.18%), Postives = 126/224 (56.25%), Query Frame = 0

Query: 5   NRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI-------------KPVMVQ 64
           N NA    A  + N   +AHD +RP+R YA+PNLYNF  GI             KPVM+Q
Sbjct: 57  NANA-QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQ 116

Query: 65  MIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANAL 124
           M+Q AGQFGG  GEDPH H++SF  IC++F M G+    +R  LFP +LRDEA++WA + 
Sbjct: 117 MLQAAGQFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSF 176

Query: 125 EDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM---------------- 184
           E GE+ TW +++EKFM+K FPP  +A+RR+++++F+QKD E +                 
Sbjct: 177 EPGEITTWGKMVEKFMQKYFPPTVSAKRRRDIVTFEQKDSETFSEAWTRFKRLVRNCPHN 236

Query: 185 --------------MRGATQQTADAVFVGGMLKSSYNQIKATLD 186
                         +   +Q  ADA   GG++  +Y Q K  LD
Sbjct: 237 GIPNCVQMEIFYGGLNKTSQSMADASAAGGLMDKTYTQAKEILD 279

BLAST of PI0017666 vs. NCBI nr
Match: XP_038880527.1 (uncharacterized protein LOC120072192 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-33
Identity = 84/219 (38.36%), Postives = 125/219 (57.08%), Query Frame = 0

Query: 22  MAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHE 81
           MA++  RP+R YA+P LY+F+ GI            K VM+QM+Q A QFGG  GEDPH 
Sbjct: 1   MANNSTRPMREYASPVLYDFSPGIIYPMPDGTRFEMKSVMLQMLQTARQFGGSHGEDPHA 60

Query: 82  HIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKK 141
           H++ F   C  F +P I+P+++R +LFP +LRD+AK+W ++LE  E+ TW++L+EKFM+K
Sbjct: 61  HMKRFLETCNFFVIPRITPEKIRLSLFPNSLRDDAKQWVSSLEPEEITTWEKLVEKFMQK 120

Query: 142 LFPPHENARRRKELMSFQQKDKENYM------------------------------MRGA 199
            FPP  NARRR+E+M+F+Q+D E                                 +  A
Sbjct: 121 YFPPTTNARRRREIMNFEQEDIETLSVACERFNGLVKNCPNHALLLNIQMETFYGGLNRA 180

BLAST of PI0017666 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-31
Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 0

Query: 2   ENNNRNAPP-PQAAQEP--NAAYMAHDLDRPIRSYAAPNLYNFNLG-------------I 61
           +NNN  AP   Q    P  +  ++A D + PIR+YAAPNLY+F+ G             I
Sbjct: 37  DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96

Query: 62  KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAK 121
           KPVMVQMIQN  QF     E+PH H+  F  +C++F +PGI+P  +R  LFP TLRD+AK
Sbjct: 97  KPVMVQMIQNMRQFESLQCENPHAHLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAK 156

Query: 122 RWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE 153
           RWA++LE  E+ + DQL+E FMKK FPP  N RRRK +++F++ D E
Sbjct: 157 RWAHSLEANEITSSDQLVEWFMKKFFPPAINTRRRKNVLNFEKMDNE 203

BLAST of PI0017666 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-29
Identity = 88/235 (37.45%), Postives = 111/235 (47.23%), Query Frame = 0

Query: 1   MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPV 60
           M++N  N   P     P  A++  D DR IR YAAP     N GI            KPV
Sbjct: 36  MDDNVNNGDIPIV---PRGAFIVDDKDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPV 95

Query: 61  MVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWA 120
           M QM+Q  GQF G P EDPH H+R F  I  SF   G+    LR  LFP ++RD A+ W 
Sbjct: 96  MFQMLQTIGQFSGMPTEDPHLHLRLFMEISDSFKFQGVPEDALRLKLFPYSVRDRARTWL 155

Query: 121 NALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------- 180
           N+L  G V TW+ L EKF+ K FPP+ NA+ R E+ SFQQ+D E+               
Sbjct: 156 NSLPAGSVTTWNDLTEKFLSKYFPPNMNAKLRNEINSFQQQDDESLYDAWERFKELLRKC 215

Query: 181 -----------------MRGATQQTADAVFVGGMLKSSYNQIKATLDTMLAITKN 194
                            +   T+   DA   G +L  SYNQ    L+T+   TKN
Sbjct: 216 PHHGILHCIQMETFYNGLNAQTKMVVDASANGALLSKSYNQAYEILETI--ATKN 265

BLAST of PI0017666 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-29
Identity = 73/152 (48.03%), Postives = 87/152 (57.24%), Query Frame = 0

Query: 13  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFG 72
           A  E N   +A D  R IR YAAP     N GI            KPVM QM+Q  GQFG
Sbjct: 10  AHNEANPIALADDRTRAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFG 69

Query: 73  GHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANALEDGEVGTWD 132
           G P EDPH HIRSF  +  SF + G+S + LR  LFP +LRD A+ W N L    V  W+
Sbjct: 70  GSPTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWN 129

Query: 133 QLIEKFMKKLFPPHENARRRKELMSFQQKDKE 153
            L EKF++K FPP  NA+ R E+MSFQQ + E
Sbjct: 130 DLAEKFLRKYFPPTRNAKFRSEIMSFQQSEDE 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
U5CUI29.9e-2846.41Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A5A7V2U71.3e-2459.26Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1H7E41.7e-2435.53uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J1DW022.3e-2441.61uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DY393.0e-2439.86uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
WP_217833177.12.6e-3840.18retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038880527.14.2e-3338.36uncharacterized protein LOC120072192 [Benincasa hispida][more]
XP_038887458.11.4e-3147.90uncharacterized protein LOC120077591 [Benincasa hispida][more]
XP_017233063.13.7e-2937.45PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
XP_030497803.13.7e-2948.03uncharacterized protein LOC115713460 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 95..151
e-value: 2.9E-8
score: 33.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017666.1PI0017666.1mRNA