PI0017489 (gene) Melon (PI 482460) v1

Overview


Name	PI0017489
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Clavata3/ESR (CLE) gene family member MtCLE23
Location	chr01: 3461235 .. 3461805 (+)
RNA-Seq Expression	PI0017489
Synteny	PI0017489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCCGTTTTGGAATATGACTCATTTCCACCTCCGTCTTGTTCTCGCCATTTTTCTTCTTCTTCTAACTCCGACAACCGCCACCGCGGCCCTCCAAGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCATCAATAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGATTAATTATTATTATTATTTCACAAAGTTTTTCTTAATTTATTATTATTATTAAAATTTACCCACTATATTTTTTTTGTTTTTAGTTTTAATTTTATATGGTAGTTTTGGATTATAGAGAAGGCTTTAGATATAGTTGGGAGTTGATAAATGCTGAAGGGATGTTTTTTATTTTTTAGGAAACTCATGTAGAAAATTTTGGTATTTGTATTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTGGGTGCTGTAAATTTTTGCAGGCTACTACTCTCTAATTTAGAGGTCTGATTATACAATATTAACCAATGTATATATTAAATAAATAGAGAAATTTTCATTAA

mRNA sequence

ATTTTCCGTTTTGGAATATGACTCATTTCCACCTCCGTCTTGTTCTCGCCATTTTTCTTCTTCTTCTAACTCCGACAACCGCCACCGCGGCCCTCCAAGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCATCAATAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGATTAATTATTATTATTATTTCACAAAGTTTTTCTTAATTTATTATTATTATTAAAATTTACCCACTATATTTTTTTTGTTTTTAGTTTTAATTTTATATGGTAGTTTTGGATTATAGAGAAGGCTTTAGATATAGTTGGGAGTTGATAAATGCTGAAGGGATGTTTTTTATTTTTTAGGAAACTCATGTAGAAAATTTTGGTATTTGTATTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTGGGTGCTGTAAATTTTTGCAGGCTACTACTCTCTAATTTAGAGGTCTGATTATACAATATTAACCAATGTATATATTAAATAAATAGAGAAATTTTCATTAA

Coding sequence (CDS)

ATGACTCATTTCCACCTCCGTCTTGTTCTCGCCATTTTTCTTCTTCTTCTAACTCCGACAACCGCCACCGCGGCCCTCCAAGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCATCAATAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGA

Protein sequence

MTHFHLRLVLAIFLLLLTPTTATAALQARIPMRKQVIFRPSSPSIVHKSTDFEDQKRRVPTGSNPLHNKR

Homology

[Close]

BLAST of PI0017489 vs. ExPASy TrEMBL
Match: G7J6P6 (Clavata3/ESR (CLE) gene family member MtCLE23 OS=Medicago truncatula OX=3880 GN=MTR_3g080060 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-04
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1  MTHFHLRLVLAIFLLLLTPTTATAALQARIPMRKQVIF-RPSSPSIVHKSTDFEDQKRRV 60
          M  FHL L+  I LL LTPT+ T   +   P  +Q  F R ++  I  +  +FE QKRRV
Sbjct: 3  MKQFHLFLLFTI-LLFLTPTSYTTRTKFSGPSTQQQAFHRWANSPISSRGKEFESQKRRV 62

Query: 61 PTGSNPLHNKR 71
          PTG+NPLHNK+
Sbjct: 63 PTGANPLHNKK 72

[Close]

BLAST of PI0017489 vs. NCBI nr
Match: KAG6572280.1 (hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MTHFHLRLVLAIFLLLLTPTTAT---AALQARIPMRKQVIFRPSSPSIVHKSTDFEDQKR 60
          MTHFHL LVLAIFLLL   TTAT   AA Q RI MRKQV+FRP SPS  +K T++E+QKR
Sbjct: 1  MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPS-PYKFTNYEEQKR 60

Query: 61 RVPTGSNPLHNKR 71
          RVPTGSNPLHNKR
Sbjct: 61 RVPTGSNPLHNKR 72

[Close]

BLAST of PI0017489 vs. NCBI nr
Match: KAG6589151.1 (hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MTHFHLRLVLAIFLLLLTPTT----ATAALQARIPMRKQVIFRPSSPSIVHKSTDFEDQK 60
          MTHFHLRL+L I LLLLTPTT    A+AA++ RI +RKQVIFRPSSPS   K  DFEDQK
Sbjct: 1  MTHFHLRLLLPILLLLLTPTTAATVASAAVRPRISLRKQVIFRPSSPSTT-KPIDFEDQK 60

Query: 61 RRVPT 62
          RRVPT
Sbjct: 61 RRVPT 64

The following BLAST results are available for this feature:

BLAST of PI0017489 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G7J6P6	9.0e-04	47.89	Clavata3/ESR (CLE) gene family member MtCLE23 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of PI0017489 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572280.1	1.6e-15	73.97	hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589151.1	1.4e-11	72.31	hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0017489 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017489.1	PI0017489.1	mRNA