PI0017477 (gene) Melon (PI 482460) v1

Overview


Name	PI0017477
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	exosome complex component RRP43
Location	chr08: 8732923 .. 8752187 (+)
RNA-Seq Expression	PI0017477
Synteny	PI0017477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACCAATGATGAAGAACAAACTATTGTCGGTGATGAAAACGCCAATGATGTACAAAGAGTTGCAAGAAGTAAAGAAAAAGGAGAAAAAAAAGAAAAAATAAAGGAATACCTGATCGCCGATGATGAAAAAGTTGTCGTCGATGATGAAAATGCCAATGATCTAGAAGTATTACTATTGGTGATTAAAACGACAATGGTTACTGATGAAGAAGACGCTCGATGATCAACTATGAAGAAATCGTCGAAGAAGGACGAAGAAAGATGTCTAACTTCAGACACGAGTAATCAACAGTTGAAGATTTAAATATTTTCAAGGGTATTTTTGAAAATTTGAAAATGAAAAAGAGGTGTGTCCCAAGCTCTGCATTTTTGCCCTAGAATGTTAATACATTTGGGTTTTTTTCTATATGTATGTAAAGGTAAATACTTTTAGTTTTTTTCTCTATTTATTTAAATTCCCCTTATTTTTGTATTTCTTTTAACTACATTACTCACTAAAAAAAATCCAGTTCATAGTTTGATTCACCGTTTATTACCTTGATATTTCCATCAACCCACATTTCTCGCTAAATTTATTCCTATTATCAACTCAACATTTTGTTTTTATCGCGAATGCTCTATATCTAGGTTAAGTGCGTGTAAGTGGGAAAAGAAAAATTGTGACACTTCAGTTTTGCTTCACGAACGCTGCGGGAATAGACCCCCACCGCGCCACTCGCTCTCTCTCTCACGCCAACTCTCCCTCGTCCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCGCCGCTCACTACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGGTGAGAGCTTCTCTGCCGTCTCTCTCTCTCTAAGAACTTTTCTTTGCACAATGTCGCCACCGTTGCATCGCCAACAGCCGAGCGCCACCGCTCCGATCTATATGGAATGACTTTTTTTTCTTTTTCAAATCATAACTGGTTTGCAATTTATGTAAAACAGATTGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGTTTCAGGTTTTGATTTTCAATAATTTGTCATTTCTTACCATTTCCAGCTTTTGTTTCATTTCGAGTTTGCTTCATTGATTTTGACACTCTAAACTGAATTTGGGTATCGTCTATTCATTTAGGACCAGTATCTTCTGCGAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGGTGAGTGCCTCCACACTTAACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTATAGAGTCACCGGATGAGGGTTGCATAGGTTGGCCATTGTCAATTGCTAAAGATTTTTGGTCATTGTTCATCATAATCTTTATGATAACATCCTATACATCTTGGTGATTTGGAGTCTATCTTTTCCAGCTCTTGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTGCAATTTTGCTTTGACATATTGCAATTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAGAAAATATTTTGAATGCCAGTGAAGTGTTTGAGATGGCTTTCTTACTTAAATTTAGAGAAAAGAGAGTTTTCATATGAACACTCTTAATAATCACTTTTAGACACTTGCAGATGATAATTAATTAAGAGGTCATAGGTTCAATCTAGGTGGTCACTTACCTAGGAATTAATTTTTAATTTTCTATGAGTTTTCTCAATATCGAAATATTGTAGTGTCAGGTGGATTGTCCTGTGAGATTAGTTGAGTTGCGTGCAAGCTCGCTTGGACACTCACGATTATAGAAAAAAAAGATATGAACACTCGCAATTTGCGGATGATAATCACTTTGTGCCACCCTTTGGGTGTTGTGGAATGAGAGGAATCGAAGGGTTTTTAGGGGTGTCGAGAGGGAGAGTGGTGAAGTCTGGTCTATTATTCGTTTTCACGTTTCTCATTGGGCTTCAATCTTGAAGACTTTTTGTAATTATCCTTTAGACATGATTTTGTACAGTTGGATTCCCTTCTTGTAGGGTCTCTTGTTTCTTGTTGGCTTGGTTTTTTGCATGCTTGTGTATTCTTTCATTTTTTTCTCAATGAATGTTCTTATATAAAAAAGAATAATCACTTTTAAACACAACAAGGTTTATATCCAAAGAATCTTGACAAATCTTGAGGCAACTTCAAACATGACCTGCTCTAAAAGATTGATGTGAGTGGGCAGATTCTAACAGAACAATCTAACCTCACTAATCCAGAAAATTATTAGGGGCACTTGCAAAGATAGCAAAATTTTTTATGATAATAGAGCCCATGTCACTACATTTTCTAAATTACAAAAGTAGTAAATTTAAAAGCAGATAGCCCTCTTAATCGCCTTCTAATAGCCCTCTGATAACCTTCTGATAACCTTCTGATAGCCGTCTGATATATCTAATTATTTGTCATATTTGTCATATTTGTAGTATGCAAAAAAGAGGTGCTATGAGCTATTTTTTTCTAAATGTTTTTGTCATCTGATGCAATTTCCCAAATTATTAAATAATTAAACAAATATAAAGCATAAAGCTGGTGGACGAAATGCCATTGTTATAGTTGATTGAATGTATCTAATGGCATGATGTCTATTCTAATGAAGCTAGTGTAACGATACCATTTGGGGGTGAGAATCTAACATTCTCTATGAAGTGGGCTCTCTTGGCCCAGACTTGGAAATAGCTCGAGGAAAATCCTACTTTCAAGGAGTGTTTGGGGTTAGGAGTGGAATAATGAGGTGTAAGGAGTTATGAAGTCTAGGAAGTTGTGAACTTTTGGACCCGTAATCTAAGGAGTTGATAAGATATAAAATTGATGTTTCTAGTAGTGGGACCCACCAACTCCTTGGGCCAAACAAAGAGTGGAGTTCATAACTGATCCTACCCAACAACTCCTTTGGTCAAACACACCCTTAAGGGCTGTTTGGAGAGCTAGAATGTATTAGGATTTCTAGGAATTAGAGGGGTGTTGGAAATCATGAGTAATTGAAGACGAAATGGAACTTGAGATCGTGAAGTATGAAAACAGTGAAAAAGAGTATTGGATTGAAAACTGTTGGAGCATAATGAGTTTTGTATCATAAATCGAGCCCAAAACACTCAAGCTAAACATGAGTTTTAGATTACATTACAAACCTATCCCATTACAGGTCACCAAACACCCCTTTAAGGACTCTTAGAATCCAATCATACATCAATCTATGTGAAATACTTCAAAATGGACGAATATACCTCTTTGTGTGGAATATTATCTCTTGTTCAATTGGTAACTTTCTTTTGTGAATTTATTCCCTAATATCACGTGTCTTTTCTTAATGCCTTCCAAGATTGCGAATATTCTATAAAAAATCATTAGAGACTTTATTTGGACAACTGTGATTGGGAAAAGCAACCATTTGTCAAATTGGAAAGTAACTTGCCTCCTTGCCCTTGGTGGCCCTTGGATTTGAAGCTGGAGAAGCAGAAATATTTACCGCATGCCTAAGTACCTCTGGAGATTTCTTAGAGGGAGGCTCTTTGGTACAAAATTGTGGTGAGAAAGCATGACCTTCATAATTGGGGTTGAAAGAAAAGTGATCATGTTAGCTACCTAGATAAGAATATTAGTATGTTAGTATTAAGGGGTATAATGGTCATTAGATGGAAAGTTAGTAACTGGGATGTTGTATAAACACTAAGAGGACGAGGGAGTGTAGGTTAGGCTATTTTGTGGAGGTGATCTAGGACTTGGGTGAGAGCACTCAAAAGGGAGGTTCCAAGTTCCTCTATACTTGGGTTATCTTATAGTTCTTTAATTCTCAATATATTTTAGATCTTGATTCTTGTTAGGAAGTATCCTAACAAATTGGTGTCAAAGCAACAACCTGGGAAAGAATTGGAAAAATGGTGCAAAAGTGGATGGAAGAATGATAAATGTGATCGATCAAGAACTTGCTGAAATTCGCAATACAGGGGATGCTTTTGAAGAGGAGTACTGCCTTTCACCCTTCATTGATGGCTAGACAGAGAGTCAACTGCTGTTAGAAACATAGTTAAGGTGCTTTTGAAATGAACAATCCAAATTATGGAGTAGGTGGATTCAGCAGAGTATTTGTGTAATAACGTTTCACATATCTATCAACACCACACTGTTTAATGTGGTTTATGGGATACTTCCATCAGCCATAATCTCATATGGTGAAAGAAGAACAACGAATGATACGGTGGAACGATAACTTACGGAAAGAGATGAAACTTTGTAGCTCTTAAATAGCTTTCGTTGATGGCACATAACAGAATGAAGAAGATGGTCGATCAATATCAAAGAGAGCTGAGTTTTGAGGTGGGGAAGGAAGATTTTATGAAACTGTGACCTTACAGGTTGAAAACATTGGCTCGGAAAAGGTGTGAGAAACTCTCCTCTCGTCTTTATGGGCCCTATCGCATCATTGAGAAGATAAGGGAAGTGGCCTATAAGCTTCAATTACCAACAGAAGCGACAGCACACAATGTGTCTTATATATCTCAGTTGAAGCACACATGGTTGATACATCCTCTTGAATTAACTGATCCTTTTGAGTTGCAAGTTAGGCATAAAGCAGTATAGGGGATTAGATGGAATCCAAAGTGGGGTCGAAATGAATGTTTTGATTAAATGACAACAACCAGATAGTGAAACAACTTGGGATCGGTTGACTTTATGAGAAAACAATTCCCCTCTTTTCACCTTGAGGCAAGGTGAAATTTAAGTCGAAGGGTATTGTGAAACACATGATTGTGTATATATATGCGAGAAGGGGCAAGAAGGAATTCTCGATAATAAGGTTGAGGGAACAAACGGTTAGTGGAACGAAGAAAAGGTGTACGAGTGTGGGGACCAGAGGAGATGGTTATGCAAGGGCTGGAGGCTTTGATGAAAAACGTGTGAAGTTTTTTTTTTGGACAGAGGCTCCTTGTGGAGAGAATTCCAGCTTTCTTGAATTAGCTGGAGAATCCTATCCTTTTCAGTTTTTCTCGTTTTCTTATTGTCTGGGTTTATCCCTATGTTAAGACTTGTTATTCTATTTTTCTGTGTTGAGACTCTGGAATTTTATTACACCAATCTACTGTGTCACTTTTACTCTGTGGCTTGTCAATCTCTTTGGTTTAATTGCCTGTATGTGTATCGTGAACAGAAACCTAACACTTTCTTTACTGGTGCTTAGGAGATTTGGCAGTTGGTGTTGAAAGAGTTTGAGCTGTTCTGGTATTTTTCTAAAGCATACTCTTCCACTTTTTGTCAACTGCTTTATAAAGCTCCTTTTAAGAGGCAAGGCAAAATTTTCATGGGGGTGGTGAAAGCTTGTAGAAAAATAATCTTGAAAGAGAGGAGGCTTTTTGAAGGCAAAATAGAAAATATAAGTGATCTGTAGGAGATTTTGTAGGCAAAGACGAAATCTTTCGGAGGATTGCTGGATGGGGAGGAACCTTTTTGCATCTTGTTTCTGCTAATGCATTGCCTCTCAAATAAGAAGTTACATCCTGTAGTCTCTGTGTTGCCTTACTCCATCTCTCTTGGTTTCCAAAGACCTTTGACAAATTGAGGGGTGATGGACATGACAAATCTTCTTTCCCTTCAAGATAAACTTATAGTTCCTGGGAGAAGGGATGTTAGGTTTTGGGCCTAGGGGCTTCTCTTGTCATTCCCTCTTTCATCTTTTTTTTCCTTTCTCCTCTTATTAACGTTATCCTCCTATTGTCGACCCTATATTTTACTCTCTATGGAAGGTTAAAATCCCAAAGAAGGTTATGATTTTTGTGTGGCAGATTTTACATGGAGAGTCAATGGACTCAATACCATTTTTTTTAATGAAGCAACTTCCATTGTGGAAAAAATGAAAGAATACAAAGGCATTAAAAAAAACCAGCCCAACAATCAATACCATGGCTTGCATTCAAAGACACTTTTCCCTAGCTTTGTTACTGCAATAGTGCATTTTTGGTAGCAGTCACAAGGAGGATCTTGACCATCTTTTTTGGGGTAATCAGTTTGCTCACTTTCTTTGGAGTCACTGATTGAGATCTTTAGGGCTCTTTAAGGTTTGTTGGGAGTGGCATAGAGACGGCAGTACTTAGAAGGAGGAAGTGTTCTCGAATCCTTCATTGAAGGGGAAGGTTTCTTAATTGTGATAGGGTTACCTTTTTACCATCATGTGGGAGGATTTGGAGGGAGAATAATAATAGAATTACAGAGAGAGGTTGAGAGATCAAGTGACAATGTTTGGCAGTTCGCTTGGTTTAACACTTCCTTATGGCATCTGTTACCAAATCTTTTTGTACTTGAATCTGTTTCAGTAGCGTGCATTGTTCTCCTTCCTTTTTGTTGGGCTTGTTTCTTTTGTATGACCTTGTATATTCTTTCATTGTTTGAATGGAAGCGTGGTTTCATTTTTTCAAAAAAAATTTGTGGGTGATTTTCAATGTTGATTTTTCTGGTATTCTGGATTAAAACTCTTTGATTGTTATCCTCCTTTTGGGTAGAACTATTGGAAGGATTTTCTGTAACCTTCTTTGTTGTTGCAGTTTGGGAAATGTCTAAGTTCTCTATTTTGAATTTTCTTAGAAAATTAAACTATTGCAAAACTATTCTGCTTGCGATGTTGTGTTTCTCATTACTTCATAAGTGAAGTAAAATCTGGTAGAAGGAATGCAATATACTTTTTTGGTTTCTGATCTCTTATCCTTGGTCAATTTCCTTTGAATCTAACTGACTAATCAAGATACTGATGTGAATTCTTCAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGTATGTGCTTTAAATTCATGTATTGTCAATATATATATTTTTATTCTAGAAGTATCTTGGAGTTTGAAGTGAGGTTCCTTCACCGATATATCTTTATACTTTGTTTCTAAATTTTTTTCTTGCATCATCCTTACTTGTATTGGACATTTTCTCTCTATAGCTTAATTTTAGCCAGAGTGCAAGTTTATTATTGCGGTTAATTGTTTTAGATGAGATAGCAACTTGATATGTGTTCCACAGGATATTTACTGTTTGGACGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACATGATATATTTCTGTGTAATTTGGTAGATTTTATGCTTATCGCAGTAATGCCGAGTATGGGGGGATAGGACATTTTGTCCTCCGTTAACACTAAGAATAGTTTTTCAGATTATAGATTGTTACTTTATGCTTTTATTCCTTTACATTTCAGATTTTTTTCCCTCTTTGGATTCCTTTTGTTATCAAAATTTATAGGGACATTTATGGCTCGTTTTGATAACGTTCGTGTTTCTCGTTTCCTGTTGCCTGCTTTTTATTTTTTAAGAACTAGAAATAGAAATATGTTTGGTAACTATTTTTATTTTTTGTTACTTAAAAAACAGAAACGAAAACAAGAACTTGTTTGATAACTTTTTTTTGTTTGTTGTTTCTCATAATTTTTCCCTCACCTTTCTTCTTTTCTTTTTTTGTCGTTGTTCACCATCTCTGACCATCACCTCCGCCCGCCAACCTCCGCTCACCTCCCACTGCAACCACCTCCTCTGACCGTCATCATTGGCCACCTCTAGCCTCTGCTGCCAGACAACTCTAATGACCACCATCACCTTCGACCACTACCGTCGATAATCAACTCCAACCACAACCTTTGGTGACCACCATCATGAACTCCGATGGTAACCATGCTAACAACCAACTTTGGCAACCATTCCCACCACATTTTAACCGATTTCAAATGTACAAAAAATAAAAAATTCAAAATTAAAATAATATATAAACATGCATATTGTAAAGTTTGAAATCTAAAATTCAAAAATAATTTGCAGAAATATTAATTAAAAACTAAAACATAAGAATACTGATTAAAAAGCAAAGCGCTTGAACCCATGACCTGTGATATTACAATAAAGCTAAATGAATATTTTGGTAAACAAATTTTTATACTGTATAATTCTAAACAGTTTCCAATGTACTAAAAAAATTAAAATTAAAATAATATACATGTCTATTTGTGAAATTTGAATTTCAAAATTTTAGAAATCATATTTAAATATACCAATAGAAATTGAAATAATATATAAATCTAAATATTGAAAAATTAAAATTTAAAAGTTAAACTAATATATAACCATTGCAAAATTAAGAAATAAAAGAAAATTTTTCAAAAGAAATAAATAAAAGAAATAAGTAACTGTTACAAAAGAAAAAGAAAAAAGAACCATCAGGAAAAAAATTAGTAATAATAAAAAAAGAACTATTAAAAAAACACACGAAAAAAAAAAAAGTAACTGGGACTCAATCCCGCAACCTACAAGGGAGAAAGGGAATTCAAATGTGCCTAAACCAGCCTAGCCAAAGGCCTATTTTGATACTATTTCCGATACGTGCTTATATATAGTAGAAATGGAACAAGGAGAAACTACTTCTCATAGTTTCTCAAGTTTGGCCTAAATTTTTGAAGCGTTCTTTAAAATTTGGAAATGAGAAACAGGAACGGTTATCAACAAGAACAACATTTTTTGAGATCAAATTCTCCCATCAATGGCGTCGAAGGTTTCTCTTAGAAGCAAGGGCAAAAGCTCCAAGGCTTCATCGAAGTCATCTGAGGAGACGTCTGCTACTCAAGCCTTCAAGCCTTCAAGGAGTGGACTACATGGGCCGTAAAGAAAGCCAAGGTCATCACCTACTACGGCTTTATTCCTCTGGTCATCATCATCGACATGAACTCCGAGCCTAAACTTCATCTCTCCCAACTTCTCAGCCCCGTTTGATTTGATTACTTTCTTCCATGATGGATCGGGTTTGTTTTATATGGATGGTTTTTGTTGGGGGCTAGTTAGCGTTTAAATTTTAGATAAGTTTGGGTGTAATGTTCACATGCTTGAACTACAAAAGACATGCAATAGTTTGAGGTGAAAGTTTTGATCCATTTTTTGTTTCTTCTAAAAAAAAAATAAACTGGAATGGTTATCAAACAAGTCTGTTTCTTAAAAAATGAGAAATAGAAATAGGAAACAAAAAATGGAAACATTATCGAATGGGCCCTTAGTAATCATGTCCTGAAGTAAACTGCCATAATATCAAGAGGACGCCATTTAATGCTCTTTGTAATTGGGTGCTTTCTTACATTTCATTATATTATATTTCTCTTTTCCTTGTGCCTTCACGAGTCGGTTGGGATTTGGAACGTACAATGAGAAACTTTTTTGGGAAGGGTTTAAGAACGGTAAAATCAACCATTTGGTTAGATGGAACTTTGTGTCACTAAATCTCAAGAAAAGATGAGGGAGATTTAGGCATTTGGAGCTTTAAAACAAAGAAATATCACAACTCTTGACAAGTGGGGTCACCTAGGATCCCTTGTTCACTGTTGTTTAGTTCATACGGACTTATAGTATTTAGAGATTTACTGTCTTTTCATCATATGTTTCCGTTTATAAAAAAAAAACTCTTGGCTAGTGGGGTTGGAGATTTATAAATGAGCCTCACTCCGTTTAGAGAAAGGTGAGTGTTAGTAATAGAGCTAATTTGTTTCGTTGGCCTATGGCCGAAAGAGATTGGGTGAGTCTTAAGAGCCCTTGGATTAGTATTTCTAGAGTTTCGAAGCCAGTGGATTCTTTTGCTACTTACAGATTGGGACATGTTATGTGCATTTTCTTTTCACATGATCATTGGGTTGGTGTTTCTCCCTTAATGCTTAGCATTCCTCGATTATTTGCTGCTATTGCTTCTTCACTTAATGGTTTGGGTTTCAAATTTTGGGACGTTTCCCACCATTCTTGGAGCATTGTTTTCAGAAGATTGTGGAAGGATGATGAAATTATAGATTTTCAGAATCTTATGGAGCGCCTTTCTAATGCTCAGGTTGATTCTCATGATTATAGGATTTGGAGCTTAAATCCATCTGGTGCCTTATCTGTGAAATCTGTCTATGCTTTTAGCGGCCTTTCCTCCTTTACAAAGTAGATTTTTGTGGCTTTATGGAAATCCAAATATCCCAAGGGAATAAATATCCTCATATGGATTATGCTATTTGGCAATCTTCTTCAGTGCTTCATCAAAAGAAGCTTCCCAAATCATCTCTCATGCTTTTGGTTTGTCCAATATGTTGTGTGGTCTGTGGAGGGCAATTTTCTTAACCACGTGTTTGTAGCTTCTCTCGGTTTTGTTGGTCCAATCCAAGCGATTTACTTTATTCAAGGTTGTGTTCTCCAATTCTTGGCTCCAAAGTCAAAATTATTATGAATTAATGCTGTGAAGGCTCTCCTATCTGAATAAGACTGGAAAAAAGAATTAGAAAATTTTTTAAAATAAAACATCTTCGTTTTGGTCTGATTACTGGATTGGAAATGATGCCCTCAAATGAACATTTTCCAAATTGTTTGCCATTGCCAAATCTAAAGATGCTTCAATTGCAAAGGTTTGGAGTCGTGAAAACAATTCTTGGTCTTGGCTTTTGCGCTTCAGAAGGAACGTTAAGCATAAGAAATCACTGAATGGACTTCCTTCATTCAGCTCATTCCTAGTATACAGCTAACACCATGGAATGATTTATGGATTTTGAACCTTGATAAAGTGGCAAATTCACTGTTAAATCATTGATAGCTCACATGTCAAATGGTTTCCTCCTAATTGAAGGATATCTTTAATCGATTGTGGAAATCTCTTTGCCCCAAATGAATCAAGTTCCTCATATGGGAGACTGCTCATTCTTGCCTTAAACGGATGGATAAACTTCAGATATATTTCTCCCTCATGGATCTTTGCAAAAAAGATAGTGGATCCTAAAAGCACATTTTTTTCCGTTGTCAGTTTTCTGTTGATATATGGCTGCTGTGTGTGTGTTAGGAATTCACCCTTTTAAACACAGTAAATCCCAACAAAAAGGCAGAAACAGAGGCAGTCCTCTTGATATTTTCTGCTATTCAATCAACCCAAAGTTCATACAAGAAACAACAAGGAAATAACAAGAAGAAAACTCACAAATACTAGCCCAGCACCTTAGAGAAGGTTGACAACTTCTCCCTAAAAGACACAACAGTCTTTTCTACCAAAAAAACCCTACCTCACCAATCCCTATAACATTCTATTTATGTTCCTCATCATTAGTAGGCCCCATTAGCTTTATTCTTTTCCTCCATTCTCTCTCCAAAATTTGTCTACTGCGTAATTATTCTCTTGCCCCTCCTTTTATATTTGTGAATAATAGGAGGTCTTACAATACCCTGGGGTTCTAGATTCACCTTGCCCTTAAGGTAGAAAGTGGGGAACTGTTGGTTCATTTGATAGATTGACTCCCAGATTGTGTCACTCTTTGGTAAGCCTTTCCATTTAACCAACCACCCGTTTGCTCTGAGTTCCGTGCTCCAACGAATGCCTAACATAGTTTCTGGCCATAATTGGAGTTCAAATTCTTCAGTCAATACCGGCGGTATGTGTTGAACATGTTGTTAGGAAACATGAAATACATTGTGAATAACTGCTTTAGGTGGAAATCTCAAACGATAGGCTACTTCTCCAATCTTCTCGATTACCTCATAGGGTTCATAGAATTTTGGTGCCAATTTCTCGATCCTTTTTCTTGCAAGAGAGTACTGTCTATAAGGCCTTAGCTTCAGATAAACCTCATCCCCCACAACAAAGTGTACTTCCCTTCTCTTTAAATCAACAAATTTCTTCATTCTGTTTTGGGCAACATTCAAATTTTGTTTCTAGGCATTAATGGACAAATCTCTTTCTTTGAGCATGAGGTCTACCTCGTTATTAGGTGATCTCTTGTCTCCGTATGATACCAAGGGAGGTGGTGGGCAGCCGAAAACCAATTGGAAAGGGGTAGCTTTAGCTGAAGCATGAAAAGTAGTATTATACCATAATTCTGCCCAGGGGATGAACTTATGCCATTTGTGGGGCTGTTCATTACAGAAGCACCTTAAGTAAGTTTCTAAGCATTGATACACCCTTTCTGTTTGGCCATCCGTTTGGGGGTGAAAAGCTGTGCTCCTTTCAAAGTAGTTCCCATTGTGGTAAACAATTCCTTCCAAAAATTGCTTAAGAAGATTTTGTCTCTGTTGGTAATAATAGACTTTGGAATTCCATGTTTGCTGACCACTCTGTCTATAAAGGCTGTCGCTACTTGCTTGCCTGTGAAAGGATGTTTGAGAGTCACAAAGTATGCATACTTACTTAACTGTCTACCACCACCATGATGACGTTCAGATGTCCTGACATAGGTAGACCTTCCACGAAATCCATAGACCAATCTTCAAGTATTAGTTTTGGTATTGGAATAGGTTGTAACAACCCTGCTGGAAGAGTCGATTCCGTCTTGTTCCTTTGACAAATGTCACATTGTTCAACATGTTTCTTGATATCAGGCTTCATACCCTCCCAGTGCAATTCCCCATTCATTCTCTTGTAGGTTCTTAAGAATTCGGAGTGTCCTTCCAATATCGAATCATGGAAAGTATGTAATAGCGCTGGTATCACCGAGGAACGTTTAGAGATCACTAACCTGCCTTTGTACCATAGTCTATCATTCACCCAACTTTACTTTGGATTTGCCTCTGGGTACTTTCTCACACTTCCAATTAGCTTTTGTAAATCCTGATCCTCTTCAACCTCCTTTAGCACCACTTCTATGTCAATGATCCCTGGGGTAGTCATGATAGCTAACTCCTTTTCAATCTTAGAAATTTGCTCCACTCTTGACAGTGCATCCACCGCTTTGTTTTGTTGGCCTCGTTGGTACAAAATTTCAAAGTCGTACCCTAGCAATTTTGTAAGCCATTTTTGAAACTGAGGTTGTACCTCTCTTTGCTCCAATAAGAACTTTAGTGCTTTTTGGTCCGAGATGATAGTAAAATGCCTTCCTAATACATAATGTCTCCATTTCTGCACTGCAAGCACCGCGGTCATCAACTCCCTCTCATACATAGATTTTGTTTGAGCACGCTTGGAGAGCTTCTGGCTAAAAAAGCTATGGGATGACCATTATGAGACAACACTACCCCCAATCTCGTCATCAGTTTCTACCACAAAAGGTAATGACCAATCTGGTAAGGCCAACACTGGAACAAAAATCATAGCTCTTTTCAATTGCTCAAATGCTTCCGTTGCATCCTTATCCCATTTGAATTCGTTCTTTTGGAGGAGTTTCGTCAGTGGGGCTGCAATTTCTCTGTAACCCTTCACAAATCTTCTATAATAGCCTGTTAGGCCAAGAAAACCTCTTAATCCTATCACATCTTTTGGCTGTGGCCAATTCATCATCACACGGATCTTGTCTTCATCTGCCTCCACTCCTTTGCTGGAAATTCAGTGGCCTAAGTTCTGTATTTTCGAGTGAGCTATTGTGCATTTCTTTCGGTTTGCGAACAGTCTGTTATCCTTCAGGATGGCAAAAACCATGGCCAGGTGTTTCTCATGCTCTGTTACATTTGAGGTATATACCAGAATATCATCAAAGAAAACCAATACAAAGTGTCTCAGGAAGGGGCGAAATACTTGATTCATCAAAGATTGGAAGGTGGCCGGTGCATTAGACAGCCCAAACGGCATCAAGAGGAATTCGTAGTGTCCTTCGTGTGTTCGAAAAGCCGTCTTCTCTACATCTTCTTCTCTCATTCTAATTTGATGGTAACCAGAACGTAGGTCCAACTTAGAAAATATGGTGGCCCCATGTAATTCGTCAAGGAGTTCTTTTATCATGGGTATTGGGAACTTATCTGCGATGGTTACTTGATTTAGTCTTCTATAGTCTACACAAAAATGCCATCCCCCATCATTTTTCTTCACTAACAACACTGGACTTGAATACGGGTTGTGGCTTTCCTAATGACTCTCGCTTGAAGCATCTCTTCCACTAACTTCTCAATTTCTTCTTCCACTAACTTCTCAATTTCTTCCTTTTGGAGGTGTCCATACTTATATGGTCGTACATTAACCGGCCTCTGTCTTGGAATCGTCAAAATTTGGTGGTCCACTTCCCTCTTGGGTGGTAAGCTGGTTGAAGTATTAAATGTATCCTCATATTCTTGGAGGAGGAATTGAATCATTGGTAGTCCTTCTCCCATTTCCACTTGCTCTATAGTCCATTCCGGTTCCCCCTCAAGTTCTATGTCTTGGAACTCCAAAAGAAACCCTTGATCCTCTTCTTCCCACGTTTTTGTGATAGTTTTGAGTGAGCACTCGATCCTGATTAGTAACGGATCTCCCTTCAATATAATAGACTTATTCCCCACCATGAATAACATTGTCAATGAAGGCCAATGAATTCCCATTAAGCTCATGGTGTACAATCATTGCATTCCTAAAATGATGTTCATCCTCCCCAACTCGACTGCCAAGAAATCAGCAATGATGGTCAGTTCAGGTAATTCCACTTCCACCCTTTTGCATAGTCCTCTCCCTTTTCGGTCTGATCCGTCTCCAAGTGTCACCCCAAAAGTTGTTAGACCCAACTCATTCACTAGATTCTGATGAATAAAATTGTGTGTGGCTCCACTATCGATCAATACAATCACCTCCCTGCCCTTCACGGACCCTCTGATCTTCATGGTCCACTTAGCTGAAAATCCCATGATAGTTCTCAATTCAATCTCTGTTTCGATTGGCATTTCTAATTTCTTTAACTCAACTACCTCATCCCCCTTCAATGATGAGGCCTTCTTCTAGCTCTCCTTCCTCTTTGTTCATTATCAACAACATTAACTCCCTCTTTTCCTTCACTTTACAACGATGTCTAGGGGAATACTTATCATTGCATCTGAAGCATAATCCTTTGTCCAACCCGTCTTTAAATTCGTTATCTGATAGTCTCTTTAGTGGTGGCTCTCCTTTTCGAATAGTTACATGTTTCATCTAGAATTCGGGTCTATTTGTATTTACCTTTTTCGTTCCCCCCATAGTTCTGGCGGTTTGGCTCACATTACTGCCCATTCTCGGTGTCCTCAACTCAACTGTGGCTATTTTAAAAGCTAAGTTTCTGTCATTTACTAACTGGGCCTCTCTCATACAAGCCTCCAATGTCTGTGGATGTCTACTCACCACCTCTGCTTGTAGGGTGGATTCTAACCCTGTTACAAAAGCATCCTTCAATACATTTTCAGCTATGTCCGGTAGAGGGGCTGAATAGTTGAGAAACTTTTTAACATAATCATTATATGATCCATCTTGCGTAATACGGATCAATCTTGCCCCCAAATTTCCAGGGCCTTTATCTCTAAAGTGATCGAACATCCTCTCTTTTGAATCTGTCCACGACTCTATTTTCTTCCTATTGTTACTCCATCTAAACTAGTTTACTTCATCCTGGCCAAAACTCACTATTGCCACCTTAACTTTCTCTGCTTCAGTCAACTCATTAATATCAAAGAAATGCTTAGCACGATAAACCCAAGATTCAGGATTTTCACCAACGAAAAGAGGCATCTCCAGTTTCTTATACTTGCTTCTGTCAACCGTCCCTGCTTCGGCCTCACTAGATGTTTCTAACTCGTTCACCTTCCCTTTAAGTTTCATTACGGAACCGTCAGAGGTTCCAGATTCATCCCTTCGCCGGTAAGAGCTATTTTCCTTCATGTCTCCGGCCATTCTGTCAAATGCCTTCCTCATCTCCAACATCATCTCCTTCAGACCCAACACTTCCTTCTCAGTACTTTCTAACCTTTCGTCCAGCTGCTTAGTCGCCATTAATCTCGTCACCACCCCCAAATTTTCGGGCTTTGATACCAATATGTTAGGAATTCACCCTTTCAAGCATAGTAAATCCCAACAAAAAGGCAGAAACAGAGGCAGTCCTCTGATATTTTCTGTTATTTAATCAACCCAAAGTTCATACAAGAAACAACAAGGAAATAACAGTAAGAAAACTCACAAATACTAGTCTAGCACCTTAGAGAAGGCTGACAACTTCTCCCTAAAAGACACAACAGTCTTTTCTACCAAAAAAACCCTACCTCACCAATCCCTATAACATTCTATTTATATTCCTCATCATTAGTAGGCCCCATTAGCTTTATTCTTTTCCTCCATTCTCTCTCCAAAATCTGTTTCCTGCGTAATTACTCTCTTATTTGGTTGTTGCCCCTCCTCTAGAATCCATTGATTGGATCAGAATGCTATTCAACGAGTACCCCTTCAAGGTGTCTAAAAAATCTCTATGGGAAAGTGTTGTGTATGTTGTTTTATAGAAGATTTGAGACGAACAAAACTGAAACCCAACTCCAAACCATAGATATCAATGGTAAATTTACTTGAAAAAGACTACAGAAGAATTTCTTGTGAGAAGCACAAGGCACCTAAGAATATGTAAATTGTACTTGGCCACAAATAAATCCTCTCTCAAAACTTTTTGGTTTCTTTTCATCCAAAATCTAAATAAGCCACAAGAAAAGGATTTAGTCGCTTCACCAATTTCTGTACACTTAGGCTAACAAAGAGGCACTTTTTACAAGTATATTGGAAATTCGGATGGACCGTTGTAAGTGCTCCATCACTCCTTCGGTTATGTGACACTCCACGTATGAAGTAACACTGTCAAGTGGAGGAAGGCGCTGTAGTGGTCTACAATTGCCTAAAACTTACTGTGGAAGGAGAGTTTATCCTACTGCCTCAACTGGTGGTTTTCTTGATCCTATTCTTGGACTACCAAGTCTTTTAATTCTTTGAACCATTTGAAGTGCCTGTACTGCTCTTGTTTTACTTTTTGGCTGTATGTTTTTAGTTTGGCTGGGTGCAGGGTGCTAATGGAGTTTTTATCCTCGAGGATTTTATTTCTTTTCTTCAATCATTACAAAGTTGTTTCTTATTAGAAAAAAAAAAAAGAACAAAAAAAAGAAATAATATTAGTTGATGCCTAAAGTTAATAAAAGATAATTGGTCAACAAACTGCCATGGTAAAGTACAGTATGGAAGGTACATTAAGATAAACTGCATCAGTGCCGAACATGTATTTTGACATGACACTTTACCTTAGCTATAATATCCATGTATCCTAGCCTTCTAGTTAACCTTGTATTATCTGTATCTGTATCTGTGTATATATATATATATATTAATGATTTTCCCCCTCTATAGGGTTCCGATGTTTAGAGTGTGACTCCCACCTGGACTTAATGGCACGATCTAGGCTCCATGATTTACATTGGAATATTATATGAGCATATGCATAATCCGTAGGGCGTTAGCTCAATTGGAGTTTTTATTTAACTCCTTTGGTTTTGTATGAATATTTTATCCTCCCTTCAGTGATTTTCTTTGGTTAATCAAGGAGAAGAAAAAATTTGAACTCGCAAGTTGTAAGGTGTTATCTTCTGTTGATCCTATGTTTTATGAAACATGTCAATGATCAATGGTTATTTTATTATTTGAAAAATCTAATAATTTTTCTTCAAAAGCTGAAAAATGTTAACGAGATTTCTTTTCTATCTTGTTTGGTAACTTGGTAGGTTGAACTACTTTAAAACGATTAAGACCCTTTTTCTTTGTTGAGCCATATTTTAAACTCCTTCCTGGTTTATATTTTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACTTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTTGTTTTGGATTCATCTGGTCAACTGATTTCCTTCTACAAGCCGGGTGGATCTGTTCTTGCTTATACATCAGCTGTTCAGGTTGGTCTTTCCTTTCTCGGACAACTTTATTGATGGATTAGTTCGGGATTTTGTCATTCTTCACACTTTCCCTGTCTGTTCAGTTTGGTCAAGCTAGTTGGATTTTCAATATGGTGTTGGATTATAACAATCATTTAGGCCTCGTTCAGTAATTAATTGGTTTTTGAAAATTAAACCTATTTTGTATCAATTTCTTACAATGGTTTCATTTTTATTAAGTAAAAGAGTGAATTCTTAGCCAAATTTAAAAAACAAGTACAAGTTTTTAAAAACAAGCAAGAAATTTAGAACTGAAAGGGGTTTTTATAGGATTAATATTTATAGACTAAAAACTAAGGTACCAAAGAGGACATTTTTAAGTGTTTAATTTTTTTTAAAAGTATCATAGAAGATTTTAAAAATGCTTGAGACCACCTCTAATTTGTACTTGTCAGTTTACTCAGCTAATGAATTCTACAAATAATGAATTGACTTGATAGTTATATTGTTATTATAATCATCATCAATTTTCCAATATATAACTTTTTTTTAATATAAAAAATACCATCCATATCCAAAAAATTCTCTTTTGCTTGCCTTGCTTTAGGATCCACTTCTTTAATTCTTATAAACTAATGTTTGGATTAGGTTAAGGATGTGTTTGAGATTGATTTTGGAATGAGACTTTTGTCAAGTTCAGTCATTCAAATTTGTTTGTTATTTATACATACATACATATATAAAATGTGTAAATCAAACATGAAATTGATTAAAAAGTTGTGTTTGGGAGTGATTTTGAAGCTATCAAAAGTTAGTTTAACAATTTAAAAATCTCGCAAACATGCTCTATCTAGTAACTAGAATATCATAGTTGTGATTTACTTGTCAAAGTTGGAAGTAGCAAATTATGATTTAAACGACAAGTCATTCCATGCTCTAATCTTTTTCCGATGGCGTGGTTGCAGGATTGTATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

mRNA sequence

ATGATAACCAATGATGAAGAACAAACTATTGTCGGTGATGAAAACGCCAATGATGTACAAAGAGTTGCAAGAAGTAAAGAAAAAGGAGAAAAAAAAGAAAAAATAAAGGAATACCTGATCGCCGATGATGAAAAAGTTGTCGTCGATGATGAAAATGCCAATGATCTAGAAGTATTACTATTGGTGATTAAAACGACAATGAAAAATTGTGACACTTCAGTTTTGCTTCACGAACGCTGCGGGAATAGACCCCCACCGCGCCACTCGCTCTCTCTCTCACGCCAACTCTCCCTCGTCCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCGCCGCTCACTACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGATTGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGACCAGTATCTTCTGCGAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTATAGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGACGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACTTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTTGTTTTGGATTCATCTGGTCAACTGATTTCCTTCTACAAGCCGGGTGGATCTGTTCTTGCTTATACATCAGCTGTTCAGGATTGTATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

Coding sequence (CDS)

ATGATAACCAATGATGAAGAACAAACTATTGTCGGTGATGAAAACGCCAATGATGTACAAAGAGTTGCAAGAAGTAAAGAAAAAGGAGAAAAAAAAGAAAAAATAAAGGAATACCTGATCGCCGATGATGAAAAAGTTGTCGTCGATGATGAAAATGCCAATGATCTAGAAGTATTACTATTGGTGATTAAAACGACAATGAAAAATTGTGACACTTCAGTTTTGCTTCACGAACGCTGCGGGAATAGACCCCCACCGCGCCACTCGCTCTCTCTCTCACGCCAACTCTCCCTCGTCCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCGCCGCTCACTACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGATTGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGACCAGTATCTTCTGCGAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTATAGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGACGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACTTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTTGTTTTGGATTCATCTGGTCAACTGATTTCCTTCTACAAGCCGGGTGGATCTGTTCTTGCTTATACATCAGCTGTTCAGGATTGTATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

Protein sequence

MITNDEEQTIVGDENANDVQRVARSKEKGEKKEKIKEYLIADDEKVVVDDENANDLEVLLLVIKTTMKNCDTSVLLHERCGNRPPPRHSLSLSRQLSLVPSAARSRSSSAAHYRSPAASTRCRPPIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGMEID

Homology

[Close]

BLAST of PI0017477 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.3e-43
Identity = 96/285 (33.68%), Postives = 163/285 (57.19%), Query Frame = 0


Query: 149 FRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSSANGSALAKIGSTTMLAAIK 208
           F+ + P+++Y R L E+ RPDGR L +  T   + +  +S+A+GSAL K+G+TT++  +K
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRT-TTVNIGSISTADGSALVKLGNTTVICGVK 64

Query: 209 MEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRE 268
            E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +
Sbjct: 65  AEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 124

Query: 269 LSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEE 328
           L +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+   
Sbjct: 125 LCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN--- 184

Query: 329 GGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSG 388
                      K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D  G
Sbjct: 185 ----------LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEG 244

Query: 389 QLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGME 433
           +L   +KPGGS L   + +QDC++    R KE++ ++DE I  M+
Sbjct: 245 KLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274

[Close]

BLAST of PI0017477 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-42
Identity = 96/284 (33.80%), Postives = 159/284 (55.99%), Query Frame = 0


Query: 149 FRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSSANGSALAKIGSTTMLAAIK 208
           F+ + P+++Y R L E+ RPDGR L +      + +  +S+A+GSAL K+G+TT++  +K
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRA-TTVNIGSISTADGSALVKLGNTTVICGVK 64

Query: 209 MEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRE 268
            E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +
Sbjct: 65  AEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKED 124

Query: 269 LSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEE 328
           L +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+   
Sbjct: 125 LCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN--- 184

Query: 329 GGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSG 388
                      K+K  L + + P + +  +     ++ DPT EEE +    +TVV D  G
Sbjct: 185 ----------LKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDG 244

Query: 389 QLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGM 432
           +L   +KPGGS L   + +QDC++    R KE+  +LDE I  M
Sbjct: 245 KLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]

BLAST of PI0017477 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.9e-40
Identity = 95/285 (33.33%), Postives = 160/285 (56.14%), Query Frame = 0


Query: 149 FRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSSANGSALAKIGSTTMLAAIK 208
           F+ + P+++Y R L E+ RPDGR L +  T   + V  + +A+GSAL K+G+TT++  IK
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRT-TTVNVGSIGTADGSALVKLGNTTVICGIK 64

Query: 209 MEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRE 268
            E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +
Sbjct: 65  AEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKED 124

Query: 269 LSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEE 328
           L +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V+   
Sbjct: 125 LCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVN--- 184

Query: 329 GGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSG 388
                      K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D  G
Sbjct: 185 ----------LKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEG 244

Query: 389 QLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGME 433
           +L   +KPGGS L   + +QDC++    R KE++ ++DE    M+
Sbjct: 245 RLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274

[Close]

BLAST of PI0017477 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-31
Identity = 84/257 (32.68%), Postives = 145/257 (56.42%), Query Frame = 0


Query: 167 RPDGRALEKLETQPL-LLVRPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIA 226
           R DGR  E  E +P+ +    +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A
Sbjct: 23  RIDGRDFE--EFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALA 82

Query: 227 LDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIY 286
           ++  + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+
Sbjct: 83  VNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIH 142

Query: 287 CLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKL 346
            LD DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L
Sbjct: 143 VLDHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPL 202

Query: 347 KLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTS- 406
            +N  P S+T     +Y+L DP  EEE +M+T +TV +  SG++ +  K  G +  +   
Sbjct: 203 AINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEH 260

Query: 407 AVQDCIALTRQRSKELQ 422
            ++D I L  ++++E++
Sbjct: 263 LLEDAIDLATKKAEEVR 260

[Close]

BLAST of PI0017477 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-30
Identity = 80/268 (29.85%), Postives = 145/268 (54.10%), Query Frame = 0


Query: 149 FRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSSANGSALAKIGSTTMLAAIK 208
           F+++ P Q+    L + +R DGR++ +   + ++    +S+ANGSA+ + G    +  IK
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFR-EIVINDNCISTANGSAIIRAGENVFVCGIK 76

Query: 209 MEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRE 268
            E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ 
Sbjct: 77  AEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQS 136

Query: 269 LSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEE 328
           L + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V  +   
Sbjct: 137 LCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICA--- 196

Query: 329 GGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQ 388
                     +   R ++L++   S +  +    +LADPT EEE +    +T++L+SS  
Sbjct: 197 ----------STLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKN 256

Query: 389 LISFYKPGGSVLAYTSAVQDCIALTRQR 417
           ++   K GG+ +     ++ CI + R +
Sbjct: 257 IVKIIKLGGTHI-QPLLLKKCIEVARSK 269

[Close]

BLAST of PI0017477 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 3.4e-157
Identity = 293/309 (94.82%), Postives = 300/309 (97.09%), Query Frame = 0


Query: 126 IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVR 185
           IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRAL K     + L  
Sbjct: 9   IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL-G 68

Query: 186 PVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAE 245
           PVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIALDFHMPP+CSPIVRPGRPAE
Sbjct: 69  PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 128

Query: 246 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 305
           AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF
Sbjct: 129 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 188

Query: 306 SHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILA 365
           SHLQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILA
Sbjct: 189 SHLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 248

Query: 366 DPTAEEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILD 425
           DPTAEEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDCIALTRQRSKELQ+ILD
Sbjct: 249 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 308

Query: 426 EAISGMEID 435
           EAISGMEID
Sbjct: 309 EAISGMEID 316

[Close]

BLAST of PI0017477 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 5.4e-155
Identity = 289/305 (94.75%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIALDFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTA
Sbjct: 181 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDCIALTRQRSKELQ+ILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.9e-152
Identity = 285/305 (93.44%), Postives = 293/305 (96.07%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IP VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTA
Sbjct: 181 IPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDC+ALTRQRSKELQMILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 1.2e-151
Identity = 284/305 (93.11%), Postives = 293/305 (96.07%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMP ICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTA
Sbjct: 181 IPVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDC+ALTRQRSKELQMILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 2.3e-150
Identity = 280/305 (91.80%), Postives = 292/305 (95.74%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKL+SIPFSLTC+LHK +ILADPTA
Sbjct: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEES+METIVTVVLD SGQL+SFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAIS
Sbjct: 241 EEESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 564.7 bits (1454), Expect = 6.9e-157
Identity = 293/309 (94.82%), Postives = 300/309 (97.09%), Query Frame = 0


Query: 126 IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVR 185
           IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRAL K     + L  
Sbjct: 9   IVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL-G 68

Query: 186 PVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAE 245
           PVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIALDFHMPP+CSPIVRPGRPAE
Sbjct: 69  PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 128

Query: 246 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 305
           AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF
Sbjct: 129 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 188

Query: 306 SHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILA 365
           SHLQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILA
Sbjct: 189 SHLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 248

Query: 366 DPTAEEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILD 425
           DPTAEEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDCIALTRQRSKELQ+ILD
Sbjct: 249 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 308

Query: 426 EAISGMEID 435
           EAISGMEID
Sbjct: 309 EAISGMEID 316

[Close]

BLAST of PI0017477 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 557.4 bits (1435), Expect = 1.1e-154
Identity = 289/305 (94.75%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIALDFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTA
Sbjct: 181 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDCIALTRQRSKELQ+ILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. NCBI nr
Match: XP_004149399.1 (exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exosome complex component RRP43 isoform X1 [Cucumis sativus] >KAE8649355.1 hypothetical protein Csa_019145 [Cucumis sativus])

HSP 1 Score: 552.4 bits (1422), Expect = 3.6e-153
Identity = 287/305 (94.10%), Postives = 293/305 (96.07%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHL ESIRPDGR+L K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIALDFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTA
Sbjct: 181 IPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDCIALTRQRSKELQ+ILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. NCBI nr
Match: XP_038877146.1 (exosome complex component RRP43 isoform X2 [Benincasa hispida])

HSP 1 Score: 550.8 bits (1418), Expect = 1.0e-152
Identity = 284/305 (93.11%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGR L K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRGLGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAKIGSTTMLAAIKMEVMTP IESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPFIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELS+VKGKAAWMAYLD+YCLDADGSLFDAALLSAAAAFSHL+
Sbjct: 121 ISKQLSDTISSSGMIDLRELSIVKGKAAWMAYLDVYCLDADGSLFDAALLSAAAAFSHLR 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDGKV+FVSEEEGGENFEKEPVNKE+RKLKLNSIPFSLTCLLHKKYILADPTA
Sbjct: 181 IPVVALNDDGKVIFVSEEEGGENFEKEPVNKERRKLKLNSIPFSLTCLLHKKYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDC+ALTRQRSKELQMILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.8 bits (1418), Expect = 1.0e-152
Identity = 286/305 (93.77%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRAL K     + L  PVSS
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIAL-GPVSS 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           ANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTA 369
           IPVVALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTA
Sbjct: 181 IPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 370 EEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAIS 429
           EEESVMETIVTVVLDSSGQL+SFYKPGGSVLAYTSAVQDC+ALTRQRSKELQMILDEAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 430 GMEID 435
           GMEID
Sbjct: 301 GMEID 304

[Close]

BLAST of PI0017477 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 420.6 bits (1080), Expect = 1.5e-117
Identity = 217/308 (70.45%), Postives = 264/308 (85.71%), Query Frame = 0


Query: 130 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALEKLETQPLLLVRPVSS 189
           MG+P+AA  DLS++MEVDAFRR+FP++F+ERHL+ES+RPDGR L K     ++ +  VS+
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKAR-DTIVNLGLVST 60

Query: 190 ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIALDFHMPPICSPIVRPGRPAEAAPV 249
           A+GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPV
Sbjct: 61  ADGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPV 120

Query: 250 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 309
           ISK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQ
Sbjct: 121 ISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQ 180

Query: 310 IPVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILAD 369
           IP+VALND+G++V V+ E+  +N    EKE VNKEKRKL L +IPFSLTC+LHK YILAD
Sbjct: 181 IPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILAD 240

Query: 370 PTAEEESVMETIVTVVLDSSGQLISFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDE 429
           PT EEES+M+T+VTVVLDSS Q++SFYK GG+ LAY+SA++ C+ L R+R+KEL+ IL E
Sbjct: 241 PTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE 300

Query: 430 AISGMEID 435
               M+ID
Sbjct: 301 ----MDID 302

[Close]

BLAST of PI0017477 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-20
Identity = 83/282 (29.43%), Postives = 139/282 (49.29%), Query Frame = 0


Query: 157 FYERHLAESIRPDGRALEKLETQPLLL-VRPVSSANGSALAKIGSTTMLAAIKMEVMTPS 216
           F +  +A+ +R DGR  ++L  +P+ +    +  ANGSA  +IG T ++A++K E+  PS
Sbjct: 10  FIKGGIAQDLRTDGR--KRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPS 69

Query: 217 IESPDEGCIALDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELS 276
              PD+G +A+     P   P    R G    +E A  + + L    S +G  I+L  L 
Sbjct: 70  SLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLL 129

Query: 277 LVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG 336
           + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    
Sbjct: 130 IKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADD 189

Query: 337 ENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLI 396
           E  E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G + 
Sbjct: 190 EQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHIC 249

Query: 397 SFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGME 433
              K  GS L   S + D I++ +  ++ L   LD  IS  E
Sbjct: 250 GLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

[Close]

BLAST of PI0017477 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-20
Identity = 83/282 (29.43%), Postives = 139/282 (49.29%), Query Frame = 0


Query: 157 FYERHLAESIRPDGRALEKLETQPLLL-VRPVSSANGSALAKIGSTTMLAAIKMEVMTPS 216
           F +  +A+ +R DGR  ++L  +P+ +    +  ANGSA  +IG T ++A++K E+  PS
Sbjct: 10  FIKGGIAQDLRTDGR--KRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPS 69

Query: 217 IESPDEGCIALDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELS 276
              PD+G +A+     P   P    R G    +E A  + + L    S +G  I+L  L 
Sbjct: 70  SLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLL 129

Query: 277 LVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG 336
           + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    
Sbjct: 130 IKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADD 189

Query: 337 ENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLI 396
           E  E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G + 
Sbjct: 190 EQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHIC 249

Query: 397 SFYKPGGSVLAYTSAVQDCIALTRQRSKELQMILDEAISGME 433
              K  GS L   S + D I++ +  ++ L   LD  IS  E
Sbjct: 250 GLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:

BLAST of PI0017477 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	5.3e-43	33.68	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	3.5e-42	33.80	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	1.9e-40	33.33	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q8TYC2	6.1e-31	32.68	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
Q10205	1.8e-30	29.85	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of PI0017477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD66	3.4e-157	94.82	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CEE1	5.4e-155	94.75	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1ESF5	1.9e-152	93.44	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	1.2e-151	93.11	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A6J1DFM7	2.3e-150	91.80	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]

BLAST of PI0017477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460772.1	6.9e-157	94.82	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
XP_008460773.1	1.1e-154	94.75	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607...	[more]
XP_004149399.1	3.6e-153	94.10	exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exo...	[more]
XP_038877146.1	1.0e-152	93.11	exosome complex component RRP43 isoform X2 [Benincasa hispida]	[more]
XP_023544252.1	1.0e-152	93.77	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0017477 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	1.5e-117	70.45	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	1.0e-20	29.43	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	1.0e-20	29.43	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 187..311 e-value: 5.9E-19 score: 68.9
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 144..433 e-value: 9.1E-77 score: 260.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..120
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 140..434
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 140..434
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 150..424 e-value: 2.12606E-105 score: 311.028
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 147..373
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 345..428

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017477.1	PI0017477.1	mRNA