Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAATGTTACACGTGTTAGAAGTGAAGGTGAGAGGAAGGTGGTGGAATACAATGAAGATGGAGTACCCATTGAAGAAAATGGGACAAAACTAAACTCTTTCATTTGGTTGTGTGTACACTACCACATCTCCATTAACTATGCATCATGGAGAGAAGTGCATGTTAAATTGAAGGACAAAATCTATAACATAGTTGAGGTAAGTTTTCTTATATTTTTTGTACAAGTTTATCGATTGACTATATATAACTAACTATCCAATCTCAGGCTGCATTTACAATCGACAGTAGATCTACGAAGGGCGTTCTTAAGACTATAGGGACGACATTCCGTTAATTTAGGCATTGGTTGACGACGAGCCATATCTTGCCATTCAAGAATGAACCTGAACTTTTGAGACGACCACCAGATATGTATTCCTACATTAACCAAAAACAGTAGGAAGATTTCGTTAGATCTAGACTTTGTCCACATTTTGAGGTATCAATGAATTTCTTTATATTTTAGGTTTCAAATATTTGTTAAGAAACTTTATAAAACCCCAATACAATGTTATATTTGTGTAGAACAAAAGAAAACTTCAACAAGAGAGACGGAAGAAGAACAAGTATAGCCATCGACTTTCAAGAAAAGGTTATGCTAATCTACGAGAGGAATTGGTAAGAATTAGTTTATGTTTGCTTTAGTCTTAAAAACTTCTTAATCAATCTAATTTTTTGTATACGTTGAAATGTAGAAAAATACACCTTCAGAAGAAAGTGATTTTGATCGACCTAGCATGTGGAAGAAGACTAGTGTAGATAAAAAGAGACAATACGACAATGAACACGTCCAAGAAGTTGTGAATCGTATAGTAAGACACACATTACAATTTTACATTCTTTAAAGTTTTAAAGTTTTATGAAATTGAGTTATATTTTTTTGCATTTTAGGATGAAATCTCAAAGACTTGTGTTGACAAAGAGTCATCTCTAAACAATGTTTTGACATAAACTTTGGGTACACAAGAGTGTAGTGGACGTGTACGTGGTGTTGGCGGGTTTGCCACCCAAACTGCTTACTTCCACATAGCGAAACGCTAAAAGAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGCGTTGTTTGCGACTTAAAGAATTAGAGGATATTCACATATCAACACAATCTAAACCGACATCTGCACATGGATCTTGCTCAAGACCAAGATTGGAATATGAGATTCAATGTAAAAAAAAAAACTGA
mRNA sequence
ATGTCTAATGTTACACGTGTTAGAAGTGAAGGTGAGAGGAAGGTGGTGGAATACAATGAAGATGGAGTACCCATTGAAGAAAATGGGACAAAACTAAACTCTTTCATTTGGTTGTGTGTACACTACCACATCTCCATTAACTATGCATCATGGAGAGAAGTGCATGTTAAATTGAAGGACAAAATCTATAACATAGTTGAGAACAAAAGAAAACTTCAACAAGAGAGACGGAAGAAGAACAAGTATAGCCATCGACTTTCAAGAAAAGGTTATGCTAATCTACGAGAGGAATTGGATGAAATCTCAAAGACTTGTGTTGACAAAGAGTCATCTCTAAACAATTGTAGTGGACGTGTACGTGGTGTTGGCGGGTTTGCCACCCAAACTAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGCGTTGTTTGCGACTTAAAGAATTAGAGGATATTCACATATCAACACAATCTAAACCGACATCTGCACATGGATCTTGCTCAAGACCAAGATTGGAATATGAGATTCAATGTAAAAAAAAAAACTGA
Coding sequence (CDS)
ATGTCTAATGTTACACGTGTTAGAAGTGAAGGTGAGAGGAAGGTGGTGGAATACAATGAAGATGGAGTACCCATTGAAGAAAATGGGACAAAACTAAACTCTTTCATTTGGTTGTGTGTACACTACCACATCTCCATTAACTATGCATCATGGAGAGAAGTGCATGTTAAATTGAAGGACAAAATCTATAACATAGTTGAGAACAAAAGAAAACTTCAACAAGAGAGACGGAAGAAGAACAAGTATAGCCATCGACTTTCAAGAAAAGGTTATGCTAATCTACGAGAGGAATTGGATGAAATCTCAAAGACTTGTGTTGACAAAGAGTCATCTCTAAACAATTGTAGTGGACGTGTACGTGGTGTTGGCGGGTTTGCCACCCAAACTAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGCGTTGTTTGCGACTTAAAGAATTAGAGGATATTCACATATCAACACAATCTAAACCGACATCTGCACATGGATCTTGCTCAAGACCAAGATTGGAATATGAGATTCAATGTAAAAAAAAAAACTGA
Protein sequence
MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNIVENKRKLQQERRKKNKYSHRLSRKGYANLREELDEISKTCVDKESSLNNCSGRVRGVGGFATQTKRSEEIEKLSQENEKRCLRLKELEDIHISTQSKPTSAHGSCSRPRLEYEIQCKKKN
Homology
BLAST of PI0017362 vs. ExPASy TrEMBL
Match:
A0A5D3E359 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold587G00260 PE=4 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 1.8e-51
Identity = 142/305 (46.56%), Postives = 160/305 (52.46%), Query Frame = 0
Query: 1 MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKD 60
M +VTRVRS+GERK+VEYNEDGVPI ENG KLNSFI CVHYHI I YA+W +V V+ K+
Sbjct: 279 MFDVTRVRSKGERKLVEYNEDGVPIGENGVKLNSFIGSCVHYHIPIIYATWIDVPVEFKE 338
Query: 61 KIYNIV------------------------------------------------------ 120
KIY V
Sbjct: 339 KIYTTVETAFIINSRSSKSILKTAETTFRQFKHWLTKKYILPFKNEPELLKRPPYMYSYI 398
Query: 121 -----------------ENKRKLQQERRKKNKYSHRLSRKGYANLREEL----------- 180
E+KRKLQQERRKKNKY+HRLSRKGYANLREEL
Sbjct: 399 DQKQWEEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSEESELD 458
Query: 181 --------------------DEISKTCVDKESSLNN----------CSGRVRGVGGFATQ 184
DEISKTC DKE S N+ S RVRGVGGF T
Sbjct: 459 RASMWKKDRVDKKGQYDNEDDEISKTCADKEPSPNDVLTQALGTRESSWRVRGVGGFVTP 518
BLAST of PI0017362 vs. ExPASy TrEMBL
Match:
A0A5A7VG24 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00090 PE=4 SV=1)
HSP 1 Score: 205.3 bits (521), Expect = 2.2e-49
Identity = 134/282 (47.52%), Postives = 152/282 (53.90%), Query Frame = 0
Query: 1 MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKD 60
M +VTRVRSEGERK+VEYNEDGVPI ENG KLNSFI CVHY+I I YA+W +V +LK+
Sbjct: 316 MFDVTRVRSEGERKLVEYNEDGVPIGENGAKLNSFIGSCVHYYIPIIYATWIDVPAELKE 375
Query: 61 KIYNIV------------------------------------------------------ 120
KIY IV
Sbjct: 376 KIYTIVESILKTAGTTFRQFKHWLTKKYILPFKNEPELLKRPPYMYSYIDQKQWEEFVRS 435
Query: 121 ------ENKRKLQQERRKKNKYSHRLSRKGYANLREEL---------------------- 180
E+KRKLQQERRKKNKY+HRLSRKGYANLREEL
Sbjct: 436 RLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKTRVD 495
Query: 181 -----------------DEISKTCVDKESSLNNCSGRVRGVGGFATQTKRSEEIEKLSQE 184
DEISKTC DKE S N+ + KR+EEI+KLS+E
Sbjct: 496 KKGQYDNEDIQEVVNRIDEISKTCADKEPSPNDVLTQALA----KRSKKRNEEIDKLSEE 555
BLAST of PI0017362 vs. ExPASy TrEMBL
Match:
A0A5A7U006 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001620 PE=3 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 122/222 (54.95%), Postives = 142/222 (63.96%), Query Frame = 0
Query: 6 RVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNI 65
R R EGERK+VEYNEDGVPI ENGTKLNSFI CV+YHI I YA+W +V +LK+KIY I
Sbjct: 553 RSRQEGERKLVEYNEDGVPIGENGTKLNSFIGSCVYYHIPIIYATWIDVPAELKEKIYTI 612
Query: 66 VEN----------------------------------KRKLQQERRKKNKYSHRLSRKGY 125
V+N KRKLQQERRK NKY+HRLSRK Y
Sbjct: 613 VQNEPELLKRPPYMYSYIDQKQWEEFVRSRLCPHFEEKRKLQQERRKNNKYNHRLSRKDY 672
Query: 126 ANLREELDEISKTCVDKESSLNNCS----GRVRGVGGFATQ------TKRSEEIEKLSQE 184
ANLREEL K +ES L+ S RV G + + + +EEI+KLS+E
Sbjct: 673 ANLREEL----KNIPSEESELDRASMWKKARVDKKGQYNNEDVQEVVNRINEEIDKLSEE 732
BLAST of PI0017362 vs. ExPASy TrEMBL
Match:
A0A5D3DS40 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00680 PE=3 SV=1)
HSP 1 Score: 196.4 bits (498), Expect = 1.0e-46
Identity = 121/222 (54.50%), Postives = 141/222 (63.51%), Query Frame = 0
Query: 6 RVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNI 65
R R GERK+VEYNEDGVPI ENGTKLNSFI CV+YHI I YA+W +V +LK+KIY I
Sbjct: 553 RSRQGGERKLVEYNEDGVPIGENGTKLNSFIGSCVYYHIPIIYATWIDVPAELKEKIYTI 612
Query: 66 VEN----------------------------------KRKLQQERRKKNKYSHRLSRKGY 125
V+N KRKLQQERRK NKY+HRLSRK Y
Sbjct: 613 VQNEPELLKRPPYMYSYIDQKQWEEFVRSRLCPHFEEKRKLQQERRKNNKYNHRLSRKDY 672
Query: 126 ANLREELDEISKTCVDKESSLNNCS----GRVRGVGGFATQ------TKRSEEIEKLSQE 184
ANLREEL K +ES L+ S RV G + + + +EEI+KLS+E
Sbjct: 673 ANLREEL----KNIPSEESELDRASMWKKARVDKKGQYNNEDVQEVVNRINEEIDKLSEE 732
BLAST of PI0017362 vs. ExPASy TrEMBL
Match:
A0A5D3DCP7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00210 PE=3 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 9.9e-42
Identity = 110/191 (57.59%), Postives = 136/191 (71.20%), Query Frame = 0
Query: 1 MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKD 60
M + TRVRSE ERK+VEYN DGVPI ENG KLNSFI CVHYHISI YA+W +V +LK+
Sbjct: 518 MFDATRVRSECERKLVEYNGDGVPIGENGAKLNSFIGSCVHYHISIIYATWIDVPAELKE 577
Query: 61 KIYNIVENKRKLQQERRKKNKYS----HRLSRKG-YAN--LREELD-EISKTCVDKESSL 120
KIY IVE + + E + ++ S R+ +KG Y N ++E ++ EISKTC DKE S
Sbjct: 578 KIYTIVE--KNIPSEESELDRASMWKKARVDKKGQYDNEDVQEVVNHEISKTCADKEPSP 637
Query: 121 NNCSGRVRGVGGFATQTKRSEEIEKLSQENEKRCLRLKELEDIHISTQSKPTSAHGSCSR 180
NN + KR+EEI+KLS+ENEK LR++ELE+IHISTQS PT AHGSCSR
Sbjct: 638 NNVLTQALA----KRSKKRNEEIDKLSEENEKLRLRVQELENIHISTQSTPTFAHGSCSR 697
Query: 181 PRLEYEIQCKK 184
PRLEY+IQCK+
Sbjct: 698 PRLEYDIQCKR 702
BLAST of PI0017362 vs. NCBI nr
Match:
TYK30021.1 (hypothetical protein E5676_scaffold587G00260 [Cucumis melo var. makuwa])
HSP 1 Score: 212.2 bits (539), Expect = 3.7e-51
Identity = 142/305 (46.56%), Postives = 160/305 (52.46%), Query Frame = 0
Query: 1 MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKD 60
M +VTRVRS+GERK+VEYNEDGVPI ENG KLNSFI CVHYHI I YA+W +V V+ K+
Sbjct: 279 MFDVTRVRSKGERKLVEYNEDGVPIGENGVKLNSFIGSCVHYHIPIIYATWIDVPVEFKE 338
Query: 61 KIYNIV------------------------------------------------------ 120
KIY V
Sbjct: 339 KIYTTVETAFIINSRSSKSILKTAETTFRQFKHWLTKKYILPFKNEPELLKRPPYMYSYI 398
Query: 121 -----------------ENKRKLQQERRKKNKYSHRLSRKGYANLREEL----------- 180
E+KRKLQQERRKKNKY+HRLSRKGYANLREEL
Sbjct: 399 DQKQWEEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSEESELD 458
Query: 181 --------------------DEISKTCVDKESSLNN----------CSGRVRGVGGFATQ 184
DEISKTC DKE S N+ S RVRGVGGF T
Sbjct: 459 RASMWKKDRVDKKGQYDNEDDEISKTCADKEPSPNDVLTQALGTRESSWRVRGVGGFVTP 518
BLAST of PI0017362 vs. NCBI nr
Match:
KAA0066037.1 (hypothetical protein E6C27_scaffold21G00090 [Cucumis melo var. makuwa])
HSP 1 Score: 205.3 bits (521), Expect = 4.6e-49
Identity = 134/282 (47.52%), Postives = 152/282 (53.90%), Query Frame = 0
Query: 1 MSNVTRVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKD 60
M +VTRVRSEGERK+VEYNEDGVPI ENG KLNSFI CVHY+I I YA+W +V +LK+
Sbjct: 316 MFDVTRVRSEGERKLVEYNEDGVPIGENGAKLNSFIGSCVHYYIPIIYATWIDVPAELKE 375
Query: 61 KIYNIV------------------------------------------------------ 120
KIY IV
Sbjct: 376 KIYTIVESILKTAGTTFRQFKHWLTKKYILPFKNEPELLKRPPYMYSYIDQKQWEEFVRS 435
Query: 121 ------ENKRKLQQERRKKNKYSHRLSRKGYANLREEL---------------------- 180
E+KRKLQQERRKKNKY+HRLSRKGYANLREEL
Sbjct: 436 RLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKTRVD 495
Query: 181 -----------------DEISKTCVDKESSLNNCSGRVRGVGGFATQTKRSEEIEKLSQE 184
DEISKTC DKE S N+ + KR+EEI+KLS+E
Sbjct: 496 KKGQYDNEDIQEVVNRIDEISKTCADKEPSPNDVLTQALA----KRSKKRNEEIDKLSEE 555
BLAST of PI0017362 vs. NCBI nr
Match:
KAA0047527.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 199.1 bits (505), Expect = 3.3e-47
Identity = 122/222 (54.95%), Postives = 142/222 (63.96%), Query Frame = 0
Query: 6 RVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNI 65
R R EGERK+VEYNEDGVPI ENGTKLNSFI CV+YHI I YA+W +V +LK+KIY I
Sbjct: 553 RSRQEGERKLVEYNEDGVPIGENGTKLNSFIGSCVYYHIPIIYATWIDVPAELKEKIYTI 612
Query: 66 VEN----------------------------------KRKLQQERRKKNKYSHRLSRKGY 125
V+N KRKLQQERRK NKY+HRLSRK Y
Sbjct: 613 VQNEPELLKRPPYMYSYIDQKQWEEFVRSRLCPHFEEKRKLQQERRKNNKYNHRLSRKDY 672
Query: 126 ANLREELDEISKTCVDKESSLNNCS----GRVRGVGGFATQ------TKRSEEIEKLSQE 184
ANLREEL K +ES L+ S RV G + + + +EEI+KLS+E
Sbjct: 673 ANLREEL----KNIPSEESELDRASMWKKARVDKKGQYNNEDVQEVVNRINEEIDKLSEE 732
BLAST of PI0017362 vs. NCBI nr
Match:
KAA0054128.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 198.7 bits (504), Expect = 4.3e-47
Identity = 127/261 (48.66%), Postives = 146/261 (55.94%), Query Frame = 0
Query: 6 RVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNI 65
R R GERK+VEYNEDGVPI ENG KLNSFI CVHYHI I YA+W +V +LK+KIY I
Sbjct: 345 RSRQGGERKLVEYNEDGVPIGENGAKLNSFIESCVHYHIPIIYATWIDVPAELKEKIYTI 404
Query: 66 VEN--------------------------------------------------------- 125
VE
Sbjct: 405 VEAAFIIDNRSRKSILKTAGTTFRQFKHWLRKKYILPFENEPKLLKRPPYMYSYIDQKQW 464
Query: 126 --------------KRKLQQERRKKNKYSHRLSRKGYANLREELDEISKTCVDKESSLNN 176
KRKLQQERRKKNKY+HRLSRKGYANLREEL++ISKTC DKE S N+
Sbjct: 465 EEFVRSRLCPHFEVKRKLQQERRKKNKYNHRLSRKGYANLREELNDISKTCADKEPSPND 524
BLAST of PI0017362 vs. NCBI nr
Match:
TYK26496.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 196.4 bits (498), Expect = 2.1e-46
Identity = 121/222 (54.50%), Postives = 141/222 (63.51%), Query Frame = 0
Query: 6 RVRSEGERKVVEYNEDGVPIEENGTKLNSFIWLCVHYHISINYASWREVHVKLKDKIYNI 65
R R GERK+VEYNEDGVPI ENGTKLNSFI CV+YHI I YA+W +V +LK+KIY I
Sbjct: 553 RSRQGGERKLVEYNEDGVPIGENGTKLNSFIGSCVYYHIPIIYATWIDVPAELKEKIYTI 612
Query: 66 VEN----------------------------------KRKLQQERRKKNKYSHRLSRKGY 125
V+N KRKLQQERRK NKY+HRLSRK Y
Sbjct: 613 VQNEPELLKRPPYMYSYIDQKQWEEFVRSRLCPHFEEKRKLQQERRKNNKYNHRLSRKDY 672
Query: 126 ANLREELDEISKTCVDKESSLNNCS----GRVRGVGGFATQ------TKRSEEIEKLSQE 184
ANLREEL K +ES L+ S RV G + + + +EEI+KLS+E
Sbjct: 673 ANLREEL----KNIPSEESELDRASMWKKARVDKKGQYNNEDVQEVVNRINEEIDKLSEE 732
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E359 | 1.8e-51 | 46.56 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VG24 | 2.2e-49 | 47.52 | DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U006 | 1.6e-47 | 54.95 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001620 P... | [more] |
A0A5D3DS40 | 1.0e-46 | 54.50 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00680 PE... | [more] |
A0A5D3DCP7 | 9.9e-42 | 57.59 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00210 PE... | [more] |
Match Name | E-value | Identity | Description | |
TYK30021.1 | 3.7e-51 | 46.56 | hypothetical protein E5676_scaffold587G00260 [Cucumis melo var. makuwa] | [more] |
KAA0066037.1 | 4.6e-49 | 47.52 | hypothetical protein E6C27_scaffold21G00090 [Cucumis melo var. makuwa] | [more] |
KAA0047527.1 | 3.3e-47 | 54.95 | transposase [Cucumis melo var. makuwa] | [more] |
KAA0054128.1 | 4.3e-47 | 48.66 | pol protein [Cucumis melo var. makuwa] | [more] |
TYK26496.1 | 2.1e-46 | 54.50 | transposase [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |