PI0017198 (gene) Melon (PI 482460) v1

Overview
NamePI0017198
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr08: 23097987 .. 23099489 (-)
RNA-Seq ExpressionPI0017198
SyntenyPI0017198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCATCGCCAAGTAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGCGGAATTTCAGTTCAAACATACCAAGCGATGCTGCAAAACCCTAATTGGTATCATCTCTCAATTTTCCTCTGATCAAGATCTGAGCAAAATATTAGCCAATTCTCAAACAATAAAATTATTTTGAACAAACAAGTCAATCGAGCTCGAATTCACCGATAGTATTCTGATAATTAACTTCTCGCAAGAGAATAAAATATCAATTGAAATGGCTGATTGGCCTGGCATAAAACCCCTCTTTTTGTTGACTGACTTGTAAAAGAACAGTCAAAGCTTTAACAGTGTTTGTTTTCCTTTTCACTGTTTCCTTTTTCTATTGACAGTAAATGTTGCGGGGCCAGGGAAAAGAAGACACAGTGTTCCTCATTTTTTCCATTAACAAGGTAGGTGCCAAAAATGGCATTAAGTATTTTTCCCCATCTACGATTGATTATGACTGTATTTATCATACGTCCCTGTTGAATAAAAAGACTTGAACGAAGCAAAAAGCATGTGATTTTTCTACTAACTGAGAAGAAAATATCAGAAGGTTCCAAAATAGCTAAGATACGCTACAAAGATTTTGCCTCACATTTCACCCACTTTAAAGCAAGAGAGAAAGTGACAACATCCTAACCCTCGCGCCAGAGTTGAATTTAATTTCATGATATTTGGATTTAACCTAATTGTTTGAGTTGTGAATTTTAATTGTTTATTGTTTAAGCTAGGAAGCAAACCTTAAAGAAAATTGAACTGGGAGTTCTATTTCCATAAACTGAAACTCTTTAACCAAAACTCCAATTTCAGAAAAATTAATTCAACTTCAGAGACAGAATAATCGTAAAATACTCACTTTCTCATTTGCTCGTCGAGTGATAGGCCAATGTGTGTCGCAAATAGTGCATTACTCCGTTACCGTAACCTGCATTCATAGAGACGATAATATCCAAAGGCGGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCACCGTCAACGAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCGACAGCGGCAACCATTTTTATTAAGTAGGGGGAGGGGGGGACGTAGGGAGATGGGAAACACGGTGAGAAATGGCAATGGGGAATGGGTTAGGAAAATGATATTAGATAATTGGATGAAGGATAGTACTTGTAATCTTGATGAAGAGTATGGGAGGACACTGTTTAGCCTGTGATTGGTCGGAATTTAGTTCACCTCTTTTCTTTTTTCTTTTTACTCTATACGACCTTGCCGACTACGATGCTCTACACTTTTCTTGCGCTGCATTCACAGCCTACGCCGTCATTCACGCCAAGAGGGGATTGAATTTTGGAAATATCCTCAAACCGTCACTCAATTATGACATTATACTCTCCAATTTTGTGACACATCAATAA

mRNA sequence

ATGAATCATCGCCAAGTAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGCGGAATTTCAGTTCAAACATACCAAGCGATGCTGCAAAACCCTAATTGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCACCGTCAACGAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATAGTATGGGAGGACACTGTTTAGCCTGTGATTGGTCGGAATTTAGTTCACCTCTTTTCTTTTTTCTTTTTACTCTATACGACCTTGCCGACTACGATGCTCTACACTTTTCTTGCGCTGCATTCACAGCCTACGCCGTCATTCACGCCAAGAGGGGATTGAATTTTGGAAATATCCTCAAACCGTCACTCAATTATGACATTATACTCTCCAATTTTGTGACACATCAATAA

Coding sequence (CDS)

ATGAATCATCGCCAAGTAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGCGGAATTTCAGTTCAAACATACCAAGCGATGCTGCAAAACCCTAATTGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCACCGTCAACGAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATAGTATGGGAGGACACTGTTTAGCCTGTGATTGGTCGGAATTTAGTTCACCTCTTTTCTTTTTTCTTTTTACTCTATACGACCTTGCCGACTACGATGCTCTACACTTTTCTTGCGCTGCATTCACAGCCTACGCCGTCATTCACGCCAAGAGGGGATTGAATTTTGGAAATATCCTCAAACCGTCACTCAATTATGACATTATACTCTCCAATTTTGTGACACATCAATAA

Protein sequence

MNHRQVVLFIPDLRLRIAAEFQFKHTKRCCKTLIEEPVKLRMDSAAIEKSPTRRRNHRQRTALSLLSFRGFFLTSVDSMGGHCLACDWSEFSSPLFFFLFTLYDLADYDALHFSCAAFTAYAVIHAKRGLNFGNILKPSLNYDIILSNFVTHQ
Homology
[Close]
BLAST of PI0017198 vs. ExPASy TrEMBL
Match: A0A0A0LA48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730870 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.8e-34
Identity = 91/139 (65.47%), Postives = 96/139 (69.06%), Query Frame = 0 

Query: 1   MNHRQVVLFIPDLRLRIAAEFQFKHTKRCCKTLI--EEPVKLRMDSAAIEKSPTRRRNHR 60
           MNHRQ VLFIPDLRLRIA EFQ KHTKRCCK+LI  EEPVKLRMDSAAIEKSPTR+RN  
Sbjct: 17  MNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRMDSAAIEKSPTRKRNRL 76

Query: 61  QRTALSLLSFRGFFLTSVD------------------SMGGHCLACDWSEFSSPL-FFFL 119
           Q TALSLLSFRGFFLTSVD                   M G+ +     E   P   F L
Sbjct: 77  QSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTVRNGNRELFHPFSSFLL 136

[Close]
BLAST of PI0017198 vs. NCBI nr
Match: KAE8650975.1 (hypothetical protein Csa_001201 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 54/96 (56.25%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 42  MDSAAIEKSPTRRRNHRQRTALSLLSFRGFFLTSVD------------------SMGGHC 101
           MDSAAIEKSPTR+RN  Q TALSLLSFRGFFLTSVD                   M G+ 
Sbjct: 1   MDSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNT 60

Query: 102 LACDWSEFSSPL-FFFLFTLYDLADYDALHFSCAAF 119
           +     E   P   F L TL+ LADYDALHFSCAAF
Sbjct: 61  VRNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAF 96

The following BLAST results are available for this feature:
BLAST of PI0017198 vs.
Match NameE-valueIdentityDescription
BLAST of PI0017198 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA484.8e-3465.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730870 PE=4 SV=1[more]
BLAST of PI0017198 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650975.12.2e-1256.25hypothetical protein Csa_001201 [Cucumis sativus][more]
BLAST of PI0017198 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017198.1PI0017198.1mRNA