PI0017145 (gene) Melon (PI 482460) v1

Overview


Name	PI0017145
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA-binding protein 42-like
Location	chr05: 15482433 .. 15498565 (-)
RNA-Seq Expression	PI0017145
Synteny	PI0017145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGTTGGGTAACCTGAATCCAAAAGTTCTCAAACTTGTTTTAATTTGTAGTTTTTTTTAGTGCGGTACCCGGCAAAGCTCGCGATTTCCAGATTGAAAATCGGAGCATTTTCTTAATTGTCGTTGCCCATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCACCGGCACCCCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCAGGTCCTCCCCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCCGCTCCTGCTCCGCCTCCGGCTGTCTATACTCTCCCTCAATACCAGCAGGTACCAAAATATGCTTACGACTTGAATTTTTACTTCGAAGTTCTGGTTTTCATTTATTTTGGATAGGGTTTGTGGGGAATTGTTATGGAGTGGGACTTTTCTGTTGGATAATGTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTCAATTTATGGGTTTAGCATGGTTGTATTTATTTTTTATTTTTCCTATTTTATTTATTTATTATGAACAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACCCCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAGTATGCATTTTCTAGTTTCTTTGATTTCATGTGTTTGCAATCATTGGTCTTGTTGAAAAAAAAAATGTTTGGCTAGGAATAGTTATAATTGTTCCGGGTCTTTAATATCAGCTTGAATCGATAGATGTTGTTTTTATTTACTGCATCTCTCACATCTTTTAACCTCGGTAAATTTCAACCAAGGACCGGATACTTGGTTTTGGATTTGAGATCCCTATTGAAAATTCTTAGTCAAGTCCTCAATGCATGATTTTATTTTAAAAGGAAAAGGTAAGAACCCTCCATTTGAGTCTTTATGGAAATTGGAAAAGGCATCATCAGAAGAAAACTAAAGCCTTTATTTGGGAGCTCAGTTATGGTGGTTTGAATACAGGAAAGAGATTGCAAACAAGAGTGCGTTTTCATCCCACATTGGTGTATTTTTTGTGAAATGGAGGTAAACATTTTCATTGAAATAATGAAATGAGCCTAATACTCAAAGTACAAAAGATGATACAAAATGTAAACTAACAAGAACTGAACTTGCCAGTACAAAAGGAGTAATACGAGACTAGTTCAAGATTTAACTAATTGTAGAAGAGAGGATAAAACATTCCAGTTTAGAAAAAAGTCTTGAATTGAGAAAAAAGTCTGCAATGTCGGACTACATCTACCGAGGTTAAAAGATGTGAGAGATGCAGTAACTAAAATCCAAAAGATGGATACTTGGTTTTGGATAAAACATCTTTTAACCTCAAGAAAACTGCAAATCTTTTTTTGAAAGAGAGTACCGGGAGTCTCCCAAATCATAACCCAAATGAAGACCTTGACTTCTCCTTTGACAGCTTGAGTTCTGTAGAATCCAAATAACCAGCTTCTTGAGGCTCACCTAGCAACCATCCATTGACCCACTAGAGATGTCAATAACCGCTTGAATTCCCACACTTCATGTTTGAGATTAGAAGCAATTCTGAGTAAACTTGGAAAAAGAGAACTCAAAGAAGATGAAATTAGCCGAAATAATGCTGAGAAGAAATCCTGCTGGTATAACCAAGTTAAAACTTAAAAGAAGCAAGATGATCTAATTGTAACCAATCTCGAGAAAATGAAAAACTGCCAATCTTATCAAGTGAAGGAGGAGAGATACTATTTTCGACTTGTCTGTTGGACTTCCACAAATTTGTCTTTGCCTGAGAGTGACCGTTGGTTTCCATGTGAAATGAAGAGGAAGGATAAATCTGGCTTCCTCTCCAAAATTGGACTTCCACAATTGGTGTCTTACTTGTCAAGGAGTCTCTAAATCTCAAATTCACTTATTTGTTCAATGCAAACTTGCTCAAAGATCTTGCAATTTAATATTAGAGGCATTTGACTTCCCACGAGCCATGTCGGACTACATCTAAGATTTTCTTTTTTATTTATTTTTGATGAAATGAACCACTTTCATTGAGAAAAAAATGAAAGAAGACATGGGCATACAAAAAAAAACCTTAAAAAAAGGACTCCCTTCACAAGAAGGGCCTCCAACTATGTGAAATCACACCTATAGAATAGTTACAAAAAGTCTAATCCAAAGAGAAACATGAAAACAAACGAGATACCATAACTCCAAGGATCCTTCTCCACCCCCTAAAAACCTTACTGTTCCACTCACCCCACAAGATCCAATGGGAGGCTATCATTTCATCGGAGGATTTTCAATAGTGTATCTTCCTCCTTTGGTCGATTTTTGGATTTCTTCCTTTTTCATCCTTTTTACTGATGTAAATGTATTGATCCATTTAAAGATTGCAGCCTTACTTCGTTAGTCACTTCTTGAATATTATTTTTGTAACCCACCATGAGTGGTTGGGTTTTACCTCTTTTAATTTCATTAATCAATGAATTAGTTAACTTTTTTTCTCGCCGAAAAAAGTAAAACAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACCAAAAGTAAAAGGTCCTTGGCTAAATGACTTTTAATATTTCTTAAGGTGGTAAGGAGCCATAGGAATAAGGATGTAGCTAACATTATGGAAAGAAGGGAGATGTATGGTTTTTCAAGGAAGCCTAAGAAGCCAATGAGTCTCATTGCTTTCTGAAGGGTGTTGTCTTTTTGTTATCTTCTTAGTGTTAAATGGTTTGCCTCTATACTTCTTTCTCTCTCTTCTTGAAGTTGAAGCTTCTAAAGGGGTCATTAATAGTAAGGAGAAGTTGATCAGATATTTTTTTTGGGACGAGTTGGCTGTAATCTGGGGAAGCATTTGGTTAATTGGAAGACCGATCACCTCTCTCCCCCTTATTCAGGAAGGCCTTGGGATTGATTCAGCTCTCCTTACTAAAAAATAGTGTTGTAGATTCGCTGTGGAAAAGGCGCTTTGGAGGAAGGTGTTGGACAACATCTTGGGGAAGACCTGGTCTTTGTTTTAATGTCACAAAGACTGTGCCTTTGTTTCAGAAATTTTATAGATTTAAATAGGGTAATGGACGGCATATTAGTTCTCTTGTATATGTTTGGGTTGACTCAAATGCTCTTAAGGATGCCTATCCATAGATCTGTGGTATTTCTCTGAATAAAAACGCTTCCGTGTCTGAATGTTAGGATGATGAGCCAGAAATCTGGAACCTTAACTTCAGAAGTGGGCTTTTTGATAGAGAGCTTTGTGAGTGGATTGGCTGACGGAGAGGTTGCAGGGTTTTAGATTGGGCCATGATTCTAATAAAGTGAGTGGGTCCTTACTCCTTCGATCCCTCGGGGTCTTTCTCCATGAGGTCTCTTTTCCTTAATCTGATTGCCTCAAGACACCTATTCTTAAGTGTATTCTTGTGCAGCAGATTTGTGAGTAAGGTTCCTAAGAACCTGCTGTTTTCATTTTCAAGCATTTCTTGTGTCTTTGTAATTTGAGAATAGTCTCTTTTTATTTCATCCATGAAAAGTGTTGTTTTTGTTAATAAAAAAAAGTAAGGTTCCTAAGAAGGTGAAGATCTTCTTATACTCCAGGCCACAGGAGCCTAACTCCCTAAGAGAGGATCCAAAGTGAAGTTCCATTACTCTTAGCCCCTCTATTTGTGTGCTCTGTCTGCACTGTGATGAATTGGATCACATTCTGTTGCTTTGTTCCTTTGCAATAATTTGTTTGGCCAGGTTGATAAGCTTTTTTGAGATGCAGCTTTGTCTTCCTAGAAAGGTGGATTTTTGGCTCTGGGAGTCTTTTAGAGGATGCAATTTGAAGAACAAAGCTAGAATCTTGTGGTAGTTTGCTTCGAGAGCTCTCCTTTGGAACTTGTGGCTGGAACGAAATAAAAGGATTTCTTTTAAGATAAGTCTAGTTCTTTTGAGTTCCTTTGGGATTCCTAAAACTCACTGCATCTTGGTGGTGCCATAGTTTTAGCAAATTCTTTGGTAATTTTCCTATGATTCTTTGGAAGACTGTTTGTATGGGTGGTGGGGGCTCTCTTATCTCCAGCTCTTAGGTTGTTGACCTGTTGCTCTTTTATGGTTTGAAGAATTCTCCTCTAAGGTAAGGTGGTGGGGAGACCACGAATTGCAAAGCTAGCAAATTTATGTTTTTTCCTTGTATAAACACTTCATTTTTTCAAGTCTACGCTCCAACACTCACCCGACATGTGAAAAAAGTCTTACTTTTTCAATAATTTTTAACTTAGAGACACTCTTTGAAAAAACAAAGTTAACCATTTGCTAGATTTGAAAGTGCACTACTCAGTACCCACTAGAAAAGGAAGGTGCCCACTTCAAAAAAAGGACCTAGACTTAATATGTCAAAAATAAGCAAGCAATTGCACTTGGACTCCCTTTGAAAGAGTCCTTTTGTACTCCTTTTGGATATTTTGTTGATTGATGAAATTCTTTCGTCACTAAAAGAAGAGAGAGTGCTGCAGTGATTCGTTTCTATTTTCAACTTTGTTTTGTCAACCTTATTGAAACTCAATTGTTTTTCGCTCCAATGGAGAAGCAAAAGACAGCCTGAAAACTTATAAAAGTGGGGGAATCTCCTATTCTCTAGGGGTAGGGGGACTTACTCTCACAAATGCAGTCATTTCTAGCATCCCAATTGTCATCTCTTTACTTTTTAATGCCTTAGAAAGTGCTAAAGAGCTTGAGATTTATTTATGATGTTTTTTGGGGAGGAGTATGTTAGGATACTTCCTAGCAAGAATCAAGATCTAAAATATATTGAGAATTAAAGAAGAAACTACAATATAATCCAAGTATAAAGGAACTTAGAACTTTCCTCTTGATTGCTCTCACCCAAGCCCTAGATTACTCCACAAAATACCTCCCCTTCGCTCACTCATCCTCTTACTATTTATACAAGATCCAGTAACTAACTTTCCATCTAATGACCAATAGATCGCTTAATACTAACACACTAATATTCCTATCTTGGTACCTAATAGAGTACCTAAAGAAAATGACAGCATTCAAGCAAATAATAAATTGGAAGACATATCCCCCCTCCCTGTGGTGGCGTACATAGAATTTAATGAGAAAAAACATCAGCTACTTGGGAAATAGGGGTCCGGATTCATGAAAGAAAATAATGCCTTGTGGAAGGAGGTAGTTCATAATTGCCAACTAATACTCTTTTAGCTAAAGGAGGAATAGATTCCTTAGCTAGGCCAAGTGCCAATCTAAGGTCCTTGGAAATCCATCTCCAAGGCTTGCTCTGTAGCTGAAAAATGGTCTAAAATTAACCTTGGAAAGGACAGTAAAATTTGATTTTGGGAGGTTATGTGGATTGGTCATCGACCCTTAGTTCCTCCTTACCAAGAATTTACAATAGTGCTTCTTCCATAGACCACTTTATTATTTATCAATGTTGGTCCGCATCCTCAAATAGTTGGGTTAGCCTTTAGGACTTTGATTGTCGATTAAACTCGAAAGTGGATCGAGCTCTACAGCCTCGTGTAGTCAAAATGTCCTTCGAATATTGAAGATTCTAAGTCTTGGAGCCTCAAAAGAGATGGTTGATTTTTTATTAATTCCTTAATTCCTTAGTTAACTCATCACTCATCAGGGCCCCGTTGATATTAATACATCAAATGAGATTTGGGTGGCCAAGTCCCTAAGAAAGTGGAAGCCTTTCAATAAGTCTTCGTTCAAGGTAAGTTAAACACAAGGGATGTTCTACAAAGAAGATAAACAAATTCTCACGTCCCCAAATTGGTTCATTATCTGCAGGATTGAATAAAGAAAATCAGCATAATTTTTTCTTCCTTTGCTCTTGGGCAAACTCCTTGGACGAGATTATCAATTTTTTGGGGTTTGCTGGTGTTACCTAAAAGAAATTATGGGGCTCTTTTTCTGCTATTTTTGGAACTCCCTTCAAGGATGAAGGTCATATTTTATGGTCTAATGCCATCATGGCAACTTTGTGAAAATTGTGGCAAGTTTTGGACTAGAGGTTCTACTACAATGAGAATACAACTAGCCTTGACAAGCTTTGGACTCTCATCAAACTCTTTGCATCCATCTGGTGTTGTCTAAGTCTTTTTAAGTCTTTTTTGTAATTATGATTATGTACGTTGGTCTTTTTGTTGAGCCTTTGGCCTGACAAGGATAATTCATCTACACTTTTGTCATTTTTTCTCTTAATCAATATATTCTTTGTCTCTTATTAGAAAATAGAAAAAAGGACGAAAAAAGCACCCTCATTGAACAATTAATATTATTGTCCATCACTGGTTTAATTAATTTAATTTGTTTTGATGTTGAAATTTAGATATTGTAGTTACTTTTACATTATTAATAATTTTAAATGTTTGTGCTCACATGCTTGCATGTGCACACAGATAACATTTTGGTGTAACTCAAATGAGTGAATTTTATTAATGTTTTTGAAGTTGTGAATACAAGAAGACAACTACTCTATTTATAGCAAAAGTAAACTAATCTTAATTCTAATCCTAATCCTAATTAATAAGAGACTTAACAAAAGTAAACTTATCCTAATCCTAATCCTAATTAATAAAAGAAACTTAATCCTAATCCTAAATAATAAAAGAAACTAATTCTAATCCTAATAAACCAAAGAAACTAATCCTAATTTGTTAGACCTCCAATTATATTTCAGTATAGTAGGAAGGGAAAGAAAGAGAGTGCATGTGTAATGGGGAGCGTGGCTGCTAAGATTGAGCCCCACTGTTAGTTAGAAGGGAAGAGAGGTTTAAATAGCAGAGAGAGGTCCGAAAAGGGGGAGGAGAATTATTGTTCATTTGTCTTCATCCTTGAGAGATAGGATAGACAGTGGGAGGGCATTTTATTTTTGAGTTCTTGCTGCATTTTGTTCTTGTTTAGGAATTGACAATTTGTCAATCCTTTCTTTGTATTGATTATGATATTTCCATTGAATAAGATCTCTTAGTGGAGTTCTATCATATTGGTATCAGAGCAATTTTAACTTGGGAAAACGGATATCGTGATTGCTAAAAAACGGATCAAAGAGAAATTAGAAACGTTCGATCAAGAAATATCTGGAATGAGAGTAGAATTGCACAAATTACCAGCAATTGAGGAGAATCTTCTTTTGTTAGCAAAGAGTATAGAGAGGTTGGGAGTCCAGTCGGAGAAACAACAATTACTGATGATGTACGTGGAAGGGATGATGAAAGCACGACCAATGACGTCTGAAGGAATAGAAGAGTCATCAAGCAAGGGAAAATCTATTGAGAGTAATGTTGAAGGAGGAGGAACCGCGACAAACGAAGTTAAAACTGAAGAAGGAGACGACGTGAACGATCGCAGTAAGTTTAAGAAAGTGGAGATGCCTGTCTTCAGCAGTATAGTTCCAGACTCTTGGCTATTCAGAGTGGATCGGTACTTCCAAATTCATAAATTGACAGATTCAGAGAAGATGATCGTAGTGGTTATCAATTTCGACGGAGCAACACTCGATTGGTATTGATCGCAGGAGGAACGTGAATTGTTCAAGGATTGGACGAAGTTGAAACAGATACTGATGATTCGTTTTCGATCAATGTGAGAAGGATCGATTCGTGGACGATTCTTGGCAATTAAACAGGAAACAAGGGTGGAAGAATATCAAAATCTGTTCGATAAGCTTGTTGCACCGCTACCGCAATTGCCGAAGGAAGTCCTGAAGGAAGCGTTCATGAATGAGCTTAGTCCATGGATCAAGGCTGAAGTGGAATGTTGGGAACTGATCGGACTCGTGCAAATGATGAAGTTGACCCAATGCGTGAAGAATCGAGAGATCACAAGGAAGGAAGCGGGCCTTGGACAAGATACGAAAGGTAAGGCCCAAACTCAATTTCCATTTATTAAGCCTAATATACCATTGCCTGCGAAAGATAATAAAATTGGGGAGAAATTTCCGATACGAACGATTACGTTGCGAGGAGCAACGACAGCAGGAATTCAACGTGAAGGACCAGTAAAGGGAATGACTGATGTAGAATTCCAGGCTCGGAGGGATAAGGGACTTTGTTTTAGATGTGACAAAAATTATTTTACGGGACATCGCTGCAAGATAAAGGAACAAAGGGAATTGAGGATTCTGGTGGTTCGGGAGAACGAGGAGATCGAAATTTTTGAAGAGGATGTCCAGGAGGAGGAGAAGGTGTTGAATACGATGGTGGTAGAAGACGAAGTGAAACTGATAGCCGAACTGTCGATAAATTCAGTGGTGGGATTGTCCAATCCAGGAACTATGAAATTGAAAGGGAAAGTCAATGATGAAGCTGTGGTAGTGCTAATAGACTGTGGTGCGATGCACAATTTCATTTCAGAAAAATTAGTATCCACGCTGAAATTACCTACGGTAGAAACTTCGCACTATGGAGTGATACTAGGCTCCGGATCAGCAGTAAAAGGGAAGGGAGTATGCGAAGGGGTGGAGTTAGTGATTGAAGAATGGAAGGTGAAAGACAGTTTTTTGCCTTTGGAGTTGGGACCAGTGGACGTAATCCTGGGAATGCAGTGGTTACACTCCTTGGGAGTGACGGAGGTGGATTTGAGGAGGTTAACTATGAAGTTTAATTATGGAGATCACAGTGTGGAATTAAGAGGGGATCTTAGTCTGACTAAAGCTAGGGTGAGTCTGAAGAGCATGATGAAATCTTGGACTCCAACATACCAAGGATTTTTGATTGAGTGCAGAGCTATGGAAGGGGGAATGACTTTTGCAGAGTTCTATGGAGTTGAGGAGATACCTATAGTGGCTGAATCAATTCCAGCGTTGTTGACTAAGTTTGAAGATGTGTTTGATTGGCCAAAGGAACTCTCACCAAGAAGGAGTATTGAACATCATATCCATTTAAAAAGGGAGACTGATCCAGTAAATGTACGACCATATCGTTCTGCATATCAACAAGAAGAAATGGAGAAGTTAGTGGATAAGATGTTAGCTTCAGGGGTTATTCACCCCAGTACGAGTCCATACTCGAGCCCTGTCCTTTTGGTGAAGAAGAAAGATGGTAGTTGGAGATTTTGTGTGGATTATCGAGCACTGAATAATGTGACAACTCCGGAGAAGTTTCCAATTCCGGTTATCGAAGAATTGTTTGATGAACTGAATGGGGCCAATATGTTTTTGAAGATTGACTTGAAAGCGGGCTATCATCAGATACGAATGAACACAAAGGATGTAGAGAAAACCACTTTTAGAATTCATGAAGGCCACTATGAATTTCTAGTCATGCCGTTTGGGTTAACCAATGCCCCTTCGACATTTCAGTCCTTGATGAATACAATCTTCAAGCCCTACATGAGGAGGTTCGTTTTGGTTTTTTTGATGATATACTGATCTACAGTCAGAATCTAGAAGAACACTTGCAACATTTAGAGTTGGTGCTGGAAATCTTGCGAGAAAACAAATTATATGCTAATTGGAAGAAATGTAATTTTGCTTGGACAAGACTGTAGTACTTGGGGCATGTTATCTCAGGAAAAGGAGTAGAAGTTGATCCAGAGAAGATCAGAGCCATAAAAGAGTGGCCAATACCGACAAATGTACGAGAAGTACGTGGGTTTTTGGGGTTTACTGGATATTATCGACGATTTGTGCAAAATTATGGTATAGTAGCGACACCATTGACACAATTATTGAAGGCTGGAGCCTATCAATGGACAGAAAACACTCAAGAAGCCTTTGAGACATTGAAGAACGCTATGATGACACTGCCAGTATTAGCTCTACTTGACTTCAATTTACCTTTTGAAATTGAAACTGATGCTTCTGGTTTTGGAATTGGAGCAGTGCTGATTCAAGCAAAGAGGCCAATTTCTTATTTTAGCCACACTTTGGCTATGAGAGATTGAGCCAAACCGGTTTATGAAAGAGAATTGAGGTGGTGGTATTAGCTGTACAACGGTGGAGACCGTATCTATTGGGAAGAAAATTTGTTGTTAAAACTGATCAATGCTCTTTCAAGTTCTTATTGGAACAGAGGGTGGTTCAGCCACAACATCAGAAGTGGATAGCCAAGTTGTTGGGTTATACGTTTGAAGTCGTTTATAAACCGAGGTTGGAGAATAAAGTTGCTGATGCTCTATTGAGAATGCCACCCATAGTACATTTTAGTTAATAGCTCCTGCCTTAGTGGATTTGTTGGTGATTAAAGATGAAGTTGAGAAGGGTCCACATTCGAGTGAGATAATAGATGAATTGAAGAAAAATGAAGACGGGGTAGATGATTTTTCTTTACAGCAGGGGGTGTTGAAGTACAAGGGAAGAGTGGTGTTATCTAAGACATCAACGTTATTACCTACCATTCTTCATACCTATCACGATTTGGTGTTCGGAGGACATTCCGGGTTCTTGAAAACTTATAGACGATTAATGGGGGAGTTGTATTGGGAGGGTATGAAGGGTGATGTAGAGAAATATTGTGAAGAGTGTGTTGTATGTCACGCAATAAGGCTTTGGCTTTATCTCCAGCAAGTTTATTGATGCCTTTAGAAGTGCCGGATGCTGTTTGGAGTGATATTTCTATGGATTTTATTGACGGATTGCCAAAGGCGACTGGCTTTGATGTGATATTTGTAGTGTTGGATAGATTGAGCAAGTATGCTCATTTTGTGGCTTTAAAACATCTTTGTATGGCGAAGTCAGTAGCTGAAGCTTCTGTCAAAGAAATAGTGAGATTACATGGTTTTCCAAGATCCACAGTTTCGGATTGTGACAAAGCATTTCTTAGAAGTCAGTAGCTAAAGCTTTTGTTAAGTGGGCGGGGACACGATTAAATAGAAGCTTGGCTTACCATCCACAATTAGATGGCCAAACTGAAGTGGTGAACTGCAGTGTTGAGGCGTACTTACATTGTTTTTGTGGGGAGAGGCCGAAGGAGTGGGTATCTTGGCTACATTGGGCTGAGTACTGGTATAATACTACATATTTGATTTCTATTGGAATTACTCCCTTCCAAGTTGTGTATGGACGCCTACCTCCGCCACTGATTTACTATGGAGAATCTGAAACACCTAATTCTACATTTGATCAACAACTGAAGGAAAGGGATGTAGCTTTGGGCGCTTTGAAAGATCATTTAAGAGTTGCACAGGAGAAAATGAAAAAATATGCTAATAAGAAACGTAGACATGTGGAGTTTTGAGTGGGTGATTTAGTATTTCTGAAAATTCGCCCCTATAGACACCTTTACGAAAAAGGAGAAATGAGAAATTATCTCCAAAGTTTTTTGGGCCTTATAAGGTACTGGAAAGAATCTGACCAGTGGCATATAAATTGGAGCTTCTTGTTTCGGCTTCAATACATCCGGTCTTCCATGTGTCACAATTAAAAAAAAATGATAGGTGTACACACAGAGGTGTAGAAACTGATGCCTTACATCTCAGAAAACCATGAATGGATGGCTACACCAGAAGAGGTGTATGGCTATTGTAAGAATCCAACGACAAAGGTATGGGAAGTGTTGATTAGCTGGAAAGGATTGCTGCCACATGAAGCTACTTGGGAAATTTGTGATGACTTTCAACAACAATTTCCTGATTTTCACCTTGAGGACAAGGTGGTCTTAGAGGAGGAGAGTAATGTTAGACCTCCGATTATATTACAGTATAGTAGGAAGGGTAAGAAAGAGAGTGCACGTGTAATGGGGAGTGGGGCTGCTAAGACTGGGCCTTACAGTTAGTTAGAAGGGAAGAGGTTTAAATAGCAGAGGTCCGAAAAGGGGGAGGAGAATTATTGTTCATTTGTCTTCATCCTTGAGAGATAGGATAGACAGTGGGAGGGCATTTTATATTTGAGTTCTTGTTGCCTATTTGATCAAGTGCCAAGGACATGCGTTCAAGTGAACAAAAGATACCATCGATAGTGCTTTTGATTGCCGTAAGGGTCGGATTGTTGTCTTCAATGATAGGACGGTTGTTTGCTCCGCCTCTTTGAAGGTTGTCATGGGGTCATTGCCAGTAGGCCTTATTCCCGCCATCCGGTCCAAGTTTCTTGGTACTCTGATACCAATTTGATGTCACTCAAATAAGAGAATTTTATTAATGTTTTTGAAGTTGTGAATACAAGAAGACAACTTCTTTATTTATAGCAAAAGTAAACTAATCCTAATCCTAAATAATAAAAGAAACTAACTCTAATTCTAAATAATAAAAGAAACTAATTCTAATTCTAATAAACTAAAGAAACTAATCCTAATCCTAATAAATTAAGGATATGACCATAATACCCTATTCCTACTACATCACATTTTTTTATGGGAAAATAAATAATATCCCCATTGTTTAATACCCAACTGTTTTAAATCCTAATCCTAAATAATAAAAGAAACTAATTCTAATTTTAATAAACTAAAGAAACTAATGCTACCTAATAAATTAAGGATATGACCGTAATACCCTATTCCTACTACATCACATTTTTTATGGGAAAATAAATCATATCCCCAATATTTAATACCCAACTGTTTTATTAATTCATATTGCTGTGTTAGTGTCGTACTTTCTTGGTGACACATTTCACATTTCTTATATTTTTCCACTGATTTTGATGGATTTCCTTTTCCTTTTGGCTTTGTAGAAATCATGACTACTGTAGGGTATGAATTGAATTGAATCTAATTCATATTGCTGTGTTAGTGTCGTACTTGAATGGTTTCATGCTATAGTCTCCTTAACTTTTGAGCTTTGTATCTATTGCTATCATCTTTAGCCGGAACCATCTCTTAAGAAAAATGTCAATTGTTGTTTGCAGATGATTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCAAGAGTAAGTTTATTTAGTCTAATATTATTCTACATAATTCACCTTTTATTTCAATTTTTGTTTTTGGCAAGATGCATGGTGGTTAGATTTCTTGAAATCTTCTGGTCTGTTTAAAGGTTGATAATGCATCTGGGCACATCTTGTTTGTATATGATTGCATTTGAAGCTTGTGATCGGTGGTATCTGTTCCTTGAATTTCAATATTTTTTTTAGGTTTATTTAAGTTCTATTTTGGTCAAAACAATCTTTTATATTATTTTATTTGGGTTCTAAACTCTTAAATATTCTGCTTTGGTCTTTAAGCTTTTGATTTTTCATCCCCTGAATTATGCTATTAATCAATTCTTTTGGTCAATCGCTTGGAATTTGCTAACCTGATTTGTGCTACTCAAATTACTTATCTACGTCAACACTCAGCAGATAAAGGTACAAAAGCTGTGTCATATCATGTTTCTGCTAAATGATTTATAAAAATTAAAGGAAAATTAATGACAGTGACAAAATATTCTTTTATGCAAAGCTGAAGGATGAAAATAGAATTATCTGGAAAACCAAAATGAAAAACTCCGAAGTAAAATAGGATTACCTGTTTTTCATGTTTCTTAAGTATTATTTTGTGAGGTTATGAATTTTATTTAAAAAAGACGTGATCATCTGATTGGGACTTGTGCAGCTGGAACCTCTTTATGGAGCTTGTATGTAATCCCTTAGAATTTACTGAGTTCGTGGACTAGCTTGAGTTGTAACATGGTTGGGTCATTTTAGCTTGTCAGAGAAAGGTTAGCTCTGAAGCTTTTAAAAGTGGGTCTTCTCTTCCTTGGTCATTCTCACTATCTTACTGCTTGTGGGGACAAGGGGAAAGTCCCTAAAAGATTTTGGGCGTGAAACTATCCATGAAATTTTCAATATTGACATGAAGACTGTGAGCTCTCTGCTTTTAGTAATTTTTCTTTTGGTATTCAATCATGAATCTTGAAGATAGGAGCTATTATAGTGATGGGTTCTGCGATTTCCCCCTGTAGGTGCATATATTAGTGGTTTTTGGTCATTGTATATTCGTGCGGTTAAATATGTATGACCACCTTCACTCACATTTCATGTCTGGTATTGGGTTTTATCGCGGAAGGTTTATTTGATTTGTGTTATTGTTTCCTCATGTACATTGTATGGATGAACCTAACTTAATTCTCACAAACATTTGTATGTTTTGGACCATGGTCAATTTCAAGGACATTACCCAATTGTTAAAAAGGATTCCCATGTCGAACATTTTGGAAGTGGTTTTTACCATATCTTTTATATACGTGAGTGTTTGGGCCAGCTTACGCATATCTTGACTAATCTCATTGGATAATCTGTTTGACCCTACAACATTTAGGTGTCAAGAAAACTCGTAGGAAAGTGGTTTTGACCAATTGATGGATCTTTTATGAGATACAATTTGAACTCTGTAAAAAATGTGTATTCTTTCATTTTTTACAATTTGAACTCTGTATCTTGGAAAATATATACTATTTTATGACTTTGCAGATTGACCTAAATTATTTTGATATTTTATTTATGGTTTATGGTTATTGATTATGTTGTTCTTTGGGGAATATTTTCTATTCACAAATGGATTAACATGCATATAATTTTGTTAAGGTTGTTAGAGATAAGCGAACTGGTAAAACCAAAGGCTATGGATTTGTTAGCTTTTCCAATCCTACTGACCTTGCCGGAGCACTTAAAGAAATGAATGGTAATATGCTGATTTTAGTTCTATATGGGTTCGCCAGTTATTTCATCTTTCTGTTGGACTTGTGCTTCTTGTTCAATCCTCATGACATGTACTCTGTAACCCTACTGACCTTTATTTGTGCAAGATCTCGTTAGAAGATTTTGAATGGAAAAAAACCTTGTTTTTGGAGTTGGTTAAGTAACAAGTGTTTTGTTTTCCTTCATTTTGCAGTTTTCTTTCTCTCAGAAACATTTTAAAGACAATTTTAGATTTTAAATTGTAGATTTGAATTTTTTGTTTTTTTTGGTTAAGATTTTAAAGGTCCTTTGAAAAAGTACAGTATGAATTACTTTCTAAAAGAATTAACAAAATAAAAGAGTTTTGGAACTAGCATAGATGAATCTCATGGTCTACCTCGAGCATGTGCCATCTAGGCTGTGGTAGCTAGAGTTTAGAAAGATGTGGAGTTTGCCATTATTCAATGTCTTATGTTTTTCTACAAATTCTCTGAAACTATTCTTTACATTCCTTTTTTCTTTTGTTTTGTTTATTTATTTATTTATTTATTTTTACATTCCTTTCTTTTACCCTTGAAGCCTTTTCTTCTTTCCTTTTACTTCTTTTTGTTATAGTTTATGTGCTTAGACCCTTCTTGATCACAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTAGGAAGACACAAGGTAAAATAACGTACTATGGGGAGTTCTTTGCACCCCTGTTTCTTGATTTCTTTCAAATGCTCGATCTTTTGATTTGGATGCGTTTTCTAATCGACTAATTTAATTACAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAAGGTCACTCACATCCTTGAATCTCTGTTTATGCCTCGAATATAATCATCAATCAAGTGTTCGTACCGTATGTCTAACCAGTGATCACAAATTTCATGAAGGTAGTAACTGATGGAGCCTTTCTGTTCTCTGTTCCAACTCTTCCGAAATTAATGATATTGTGCGTTAGAGAGGGGATGTTTACTTTGAAGGAATAGATCTTGTAAAGTGTTATGCATTCTCCATTTTCTTTGGAAATTTAATGAAGGAATGGAAAATTAGTTCTGTTTGAAAAATGGTAGTTAACACAACTGGTTGGACATTACTCTTGTAACGGGAAGTGGCCGGGTTTAAATCTATTCTTGACTCATGAGAATTGAGCTGATATTGAAACTCTTATATCTACACACTTAATGATGGAAGAACCTGATTTTTGCTACTTCTATATATAAACACATTTGATG

mRNA sequence

AAAAAGTTGGGTAACCTGAATCCAAAAGTTCTCAAACTTGTTTTAATTTGTAGTTTTTTTTAGTGCGGTACCCGGCAAAGCTCGCGATTTCCAGATTGAAAATCGGAGCATTTTCTTAATTGTCGTTGCCCATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCACCGGCACCCCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCAGGTCCTCCCCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCCGCTCCTGCTCCGCCTCCGGCTGTCTATACTCTCCCTCAATACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACCCCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCAAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAAGGCTATGGATTTGTTAGCTTTTCCAATCCTACTGACCTTGCCGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTAGGAAGACACAAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAAGGTCACTCACATCCTTGAATCTCTGTTTATGCCTCGAATATAATCATCAATCAAGTGTTCGTACCGTATGTCTAACCAGTGATCACAAATTTCATGAAGGTAGTAACTGATGGAGCCTTTCTGTTCTCTGTTCCAACTCTTCCGAAATTAATGATATTGTGCGTTAGAGAGGGGATGTTTACTTTGAAGGAATAGATCTTGTAAAGTGTTATGCATTCTCCATTTTCTTTGGAAATTTAATGAAGGAATGGAAAATTAGTTCTGTTTGAAAAATGGTAGTTAACACAACTGGTTGGACATTACTCTTGTAACGGGAAGTGGCCGGGTTTAAATCTATTCTTGACTCATGAGAATTGAGCTGATATTGAAACTCTTATATCTACACACTTAATGATGGAAGAACCTGATTTTTGCTACTTCTATATATAAACACATTTGATG

Coding sequence (CDS)

ATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCACCGGCACCCCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCAGGTCCTCCCCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCCGCTCCTGCTCCGCCTCCGGCTGTCTATACTCTCCCTCAATACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACCCCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCAAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAAGGCTATGGATTTGTTAGCTTTTCCAATCCTACTGACCTTGCCGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTAGGAAGACACAAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

Protein sequence

MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPLPVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQKKSKLPKKSILHK

Homology

[Close]

BLAST of PI0017145 vs. ExPASy Swiss-Prot
Match: A2VDB3 (RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-39
Identity = 105/232 (45.26%), Postives = 131/232 (56.47%), Query Frame = 0


Query: 28  PLPFHLQQSAPAPAPPQYPSPYVA-PPGPPPVPLPVAPVYPAP----AP---PPAVYTLP 87
           PL  H     P P     P P +   PGPPP P+   P  P P    AP   P  +   P
Sbjct: 143 PLMAHHMHGPPPPLMRHIPPPPLGMRPGPPPAPMGPLPPPPRPMVQSAPKINPTVIQAAP 202

Query: 88  QYQQAQQLFQRDAQTITPEALESVKAALASSE------------------IEHKAETKKK 147
               A  + + + + + P  +   K +L+  E                  +E   E KKK
Sbjct: 203 TVYTAPPVRKPEEEIVEPPIIPEEKESLSYEETVIGPSMPEIEPVQPEVVLEPVQEDKKK 262

Query: 148 AIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 207
           A P K       AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A
Sbjct: 263 AKPEKLKRCIRTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRA 322

Query: 208 RVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 227
           +V+RDKRTGKTKGYGFVSF +P D   A +EMNGKYVG+RPIKLRKS WK+R
Sbjct: 323 KVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of PI0017145 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-39
Identity = 106/228 (46.49%), Postives = 130/228 (57.02%), Query Frame = 0


Query: 30  PFHLQQSAPAPAPPQYPSPYVAPPGP-PPVPLPVAPVYPAPAP-----PPAVYTLPQYQQ 89
           P  L +  P P       P  AP GP PP P PV P  P   P      P VYT P  ++
Sbjct: 153 PPPLMRHIPPPPLGMRAGPPPAPVGPLPPPPRPVVPSAPKMNPTVIQAAPTVYTAPPVRK 212

Query: 90  AQQLFQRDAQTITPEALESVKAALASSE------------------IEHKAETKKKAIPR 149
            ++      + + P  L   K  L+  E                  +E   E KKK  P 
Sbjct: 213 PEE------EIVEPPILPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKPE 272

Query: 150 K-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 209
           K       AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+R
Sbjct: 273 KLKRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIR 332

Query: 210 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 227
           DKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 333 DKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of PI0017145 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-38
Identity = 100/192 (52.08%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 51  APPGP----PPVPLPVAPVYPAPAPPPAVY-----TLPQYQQAQQLFQRDAQTITPEALE 110
           AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E
Sbjct: 273 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPRPE 332

Query: 111 SVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGN 170
                +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 333 PPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 392

Query: 171 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNR 227
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 393 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 452

[Close]

BLAST of PI0017145 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-38
Identity = 100/192 (52.08%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 51  APPGP----PPVPLPVAPVYPAPAPPPAVY-----TLPQYQQAQQLFQRDAQTITPEALE 110
           AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E
Sbjct: 271 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPRPE 330

Query: 111 SVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGN 170
                +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 331 PPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 390

Query: 171 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNR 227
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 391 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 450

[Close]

BLAST of PI0017145 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-38
Identity = 100/192 (52.08%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 51  APPGP----PPVPLPVAPVYPAPAPPPAVY-----TLPQYQQAQQLFQRDAQTITPEALE 110
           AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E
Sbjct: 271 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPRPE 330

Query: 111 SVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGN 170
                +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 331 PPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 390

Query: 171 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNR 227
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 391 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 450

[Close]

BLAST of PI0017145 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. ExPASy TrEMBL
Match: A0A0A0LH39 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQY SPYVAPPGPPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.0e-122
Identity = 238/253 (94.07%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 251

[Close]

BLAST of PI0017145 vs. ExPASy TrEMBL
Match: A0A6J1KCL6 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.9e-122
Identity = 238/253 (94.07%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQSA APA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 251

[Close]

BLAST of PI0017145 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.8e-122
Identity = 235/253 (92.89%), Postives = 239/253 (94.47%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA P PP VPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVA VYP PAP PA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. NCBI nr
Match: XP_016899517.1 (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. NCBI nr
Match: XP_004152823.1 (RNA-binding protein 42 [Cucumis sativus] >KGN61270.1 hypothetical protein Csa_006789 [Cucumis sativus])

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-132
Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQY SPYVAPPGPPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. NCBI nr
Match: XP_038890923.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 244/253 (96.44%), Postives = 245/253 (96.84%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQSAPA A PQYPSPYVAPPGPP VPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAAAAPQYPSPYVAPPGPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVA VYP PAP PAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPPPAPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of PI0017145 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.9 bits (1156), Expect = 1.5e-122
Identity = 239/253 (94.47%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 251

[Close]

BLAST of PI0017145 vs. NCBI nr
Match: KAG7029895.1 (RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 448.7 bits (1153), Expect = 3.2e-122
Identity = 238/253 (94.07%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60
           MAGPSSAPS+ SSSS SQFTYSNGSYFPLPFHLQQ+APAPA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240

Query: 241 KKSKLPKKSILHK 254
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 251

[Close]

BLAST of PI0017145 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-90
Identity = 186/255 (72.94%), Postives = 203/255 (79.61%), Query Frame = 0


Query: 4   PSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGP----PPVP 63
           PSS   S+SSSS+SQ+TY+  SY+  P+            Q P PY A P P    P   
Sbjct: 5   PSS--GSSSSSSSSQYTYAANSYYSAPY------------QPPQPYAAAPSPAVPAPVAS 64

Query: 64  LPVAPVYPAP-APPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 123
           +P A VYP P  P PAVY  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAET
Sbjct: 65  IPGATVYPQPVGPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAET 124

Query: 124 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 183
           KK+AIPRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+R
Sbjct: 125 KKRAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIR 184

Query: 184 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNH 243
           DKRTGKTKGYGFVSF NP DLA ALKEMNGKYVGNRPIKLRKS+WKERTD EA  R K+H
Sbjct: 185 DKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHH 244

Query: 244 TQKKSKLPKKSILHK 254
           + KK K  KKSILHK
Sbjct: 245 SNKKQKTVKKSILHK 245

[Close]

BLAST of PI0017145 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 144 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 203
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 204 LKEMNGKYVGNRPIKL 219
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

[Close]

BLAST of PI0017145 vs. TAIR 10
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 144 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 203
           DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213

Query: 204 LKEMNGKYVGNRPIKL 219
           + EMNG     RP+++
Sbjct: 214 MTEMNGVPCSTRPMRI 229

[Close]

BLAST of PI0017145 vs. TAIR 10
Match: AT1G11650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 144 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 203
           DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213

Query: 204 LKEMNGKYVGNRPIKL 219
           + EMNG     RP+++
Sbjct: 214 MTEMNGVPCSTRPMRI 229

[Close]

BLAST of PI0017145 vs. TAIR 10
Match: AT5G54900.1 (RNA-binding protein 45A )

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 144 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 203
           D+ +F GDL  EV D +LS  F   + S   A+VV D+ TG++KGYGFV F++  +   A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212

Query: 204 LKEMNGKYVGNRPIKL 219
           + EMNG+Y   RP+++
Sbjct: 213 MTEMNGQYCSTRPMRI 228

The following BLAST results are available for this feature:

BLAST of PI0017145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2VDB3	6.1e-39	45.26	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1	[more]
Q66KL9	6.1e-39	46.49	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]
Q9BTD8	2.3e-38	52.08	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	2.3e-38	52.08	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	2.3e-38	52.08	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]

BLAST of PI0017145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DU47	1.5e-133	100.00	LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A0A0LH39	1.3e-132	99.60	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV...	[more]
A0A6J1ET57	2.0e-122	94.07	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A6J1KCL6	5.9e-122	94.07	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=...	[more]
A0A6J1FBP0	7.8e-122	92.89	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]

BLAST of PI0017145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899517.1	3.1e-133	100.00	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]	[more]
XP_004152823.1	2.6e-132	99.60	RNA-binding protein 42 [Cucumis sativus] >KGN61270.1 hypothetical protein Csa_00...	[more]
XP_038890923.1	1.3e-126	96.44	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_023545858.1	1.5e-122	94.47	RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]	[more]
KAG7029895.1	3.2e-122	94.07	RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0017145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	1.2e-90	72.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G19130.1	5.9e-13	46.05	RNA-binding protein 47B	[more]
AT1G11650.2	2.2e-12	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G11650.1	2.2e-12	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54900.1	2.9e-12	43.42	RNA-binding protein 45A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 146..219 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 147..217 e-value: 8.1E-18 score: 64.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 145..223 score: 16.124914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 80..219 e-value: 2.7E-23 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..56
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 37..253
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 37..253
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 139..221 e-value: 1.77035E-56 score: 173.563
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 128..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017145.1	PI0017145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding