PI0017094 (gene) Melon (PI 482460) v1

Overview


Name	PI0017094
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 414266 .. 414691 (-)
RNA-Seq Expression	PI0017094
Synteny	PI0017094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCCCTTGTCGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATACAGAGCCGTCCGTGATTTGGTCCATTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAACGCAGAGAGGAAGTCACTAATCAGATCAAGATCATGGGTAATTTTCTTGGTTTCTTTACAGTTAGAAGTCAAAAGGGTTCCATAAAAAGGCACCTTTAAGAAGGGAACAGTACGAAATCAAAGAGACTACAGATGCACATGGTCAGTGATCTGAGGATCCTGTTATCTTGGAAAGAACTTTTATTGACTATTCTTCCCCCTTCTTCTTGCCCAAGTTCTGATAATAATGGAGCTGTTATTGAGAGTATCTCCCCAAAAGCTGATGCTATAATGAATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

mRNA sequence

ATGAATCTCCCTTGTCGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATACAGAGCCGTCCGTGATTTGGTCCATTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAACGCAGAGAGGAAGTCACTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCCCCCTTCTTCTTGCCCAAGTTCTGATAATAATGGAGCTGTTATTGAGAGTATCTCCCCAAAAGCTGATGCTATAATGAATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Coding sequence (CDS)

ATGAATCTCCCTTGTCGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATACAGAGCCGTCCGTGATTTGGTCCATTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAACGCAGAGAGGAAGTCACTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCCCCCTTCTTCTTGCCCAAGTTCTGATAATAATGGAGCTGTTATTGAGAGTATCTCCCCAAAAGCTGATGCTATAATGAATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Protein sequence

MNLPCRNARGLESLRAYRAVRDLVHSKNSSIMFLSTKRREEVTNQIKIMELLLTILPPSSCPSSDNNGAVIESISPKADAIMNSMLFSPNVSSEH

Homology

[Close]

BLAST of PI0017094 vs. ExPASy TrEMBL
Match: A0A0A0LFT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000670 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.6e-33
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MNLPCRNARGLESLRAYRAVRDLVHSKNSSIMFLSTKRREEVTNQIKIMELLLTILPPSS 60
          MNLP  NARGLESLRA+RAV DL+ SKNSSIMF STK  EEV NQIKIMELLLTIL PSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSSDNNGAVIESISPKADAIMNSMLFSPNVSSEH 96
          CPS DN GAV ESISPKADAIM+SMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]

BLAST of PI0017094 vs. ExPASy TrEMBL
Match: A0A5D3CFS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00760 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 50 ELLLTILPPSSCPSSDNNGAVIESISPKADAIMNSMLFSPNV 92
          +LLL IL PSSCPSSDN GAVIESISPKADAIMNSMLFSPN+
Sbjct: 49 QLLLIILLPSSCPSSDNPGAVIESISPKADAIMNSMLFSPNM 90

[Close]

BLAST of PI0017094 vs. NCBI nr
Match: KGN60558.1 (hypothetical protein Csa_019334 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MNLPCRNARGLESLRAYRAVRDLVHSKNSSIMFLSTKRREEVTNQIKIMELLLTILPPSS 60
          MNLP  NARGLESLRA+RAV DL+ SKNSSIMF STK  EEV NQIKIMELLLTIL PSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSSDNNGAVIESISPKADAIMNSMLFSPNVSSEH 96
          CPS DN GAV ESISPKADAIM+SMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]

BLAST of PI0017094 vs. NCBI nr
Match: KAA0061510.1 (hypothetical protein E6C27_scaffold41G00710 [Cucumis melo var. makuwa] >TYK10763.1 hypothetical protein E5676_scaffold332G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 50 ELLLTILPPSSCPSSDNNGAVIESISPKADAIMNSMLFSPNV 92
          +LLL IL PSSCPSSDN GAVIESISPKADAIMNSMLFSPN+
Sbjct: 49 QLLLIILLPSSCPSSDNPGAVIESISPKADAIMNSMLFSPNM 90

The following BLAST results are available for this feature:

BLAST of PI0017094 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFT0	9.6e-33	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000670 PE=4 SV=1	[more]
A0A5D3CFS9	1.5e-09	88.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0017094 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60558.1	2.0e-32	84.21	hypothetical protein Csa_019334 [Cucumis sativus]	[more]
KAA0061510.1	3.1e-09	88.10	hypothetical protein E6C27_scaffold41G00710 [Cucumis melo var. makuwa] >TYK10763...	[more]

BLAST of PI0017094 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017094.1	PI0017094.1	mRNA