PI0017047 (gene) Melon (PI 482460) v1

Overview


Name	PI0017047
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RRM domain-containing protein
Location	chr03: 24571827 .. 24574300 (+)
RNA-Seq Expression	PI0017047
Synteny	PI0017047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCCCCGATTCTGCACTCCCTTCACCGCCATTTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCCCCCGCCCACAAAGTTGTTCGATCTCCCTCCGTTAGTGGAGATGCGCATAAGCTAGGCCAGACACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGGTGAATTTTTTTCTCTTTTGTTGTGTGATGTTGTTTTTAATCTTAGTTTACAGTATGAACAATTAGGCTAACTCCTTTAATGACCGTATTAGATCCCTTATTAGAGATGGGATCAGCGAAGGATGAGCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTCAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGGGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACTGAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGGTATGAATTTCAGAATCTCAGTCTCTCAACTTGAATTTCAATTTAGTGCTTAAATATTTGCATTTGTGAACTTTAAATTGTGATTCTTAGGCGATGGTCGATATTTATTAAATGGATGTTAGTTAATTTAGCACAATGTGGCATAGCTGACAAAAGTAAGAGGTTAGTTAGGCAAAATGAAGGGACGAGTTCAATATGTCTTATAGATTGTTGTCACTCGATTCTGTTTAGCTATCCTCTCTCTCGTCAACCGTTTATTTGCCACATTCTCCTAAATCAATCAATTACCTTTTGTTTATCTAATAAATATATCACATTATCATTAGATGATAATTGAAAGTTAATGTATGTAATTAGATCTTTTTAAGTTTTAAAATGACTTTATTTTTAATTTGGTCAAATTGTAAGATTGGTTTCACAACTTTGAGATTTTCTCTTGATTATCTAGTTATTATTGGTGTTGTTGATGCGGAGCCGGGCGCTCGCCATAGGCGAGAAGTACCTAAGGTGAGCACCTTTAGCAAAGGGCTCGCCTTTTGCACCTTTTAGTTGCCTTGAACATACATGCAAGGCGACCCAGATGCTCGCCTTGTTCAATTGTTCAACTTAGTTTTTTAGAAAAAAAATAAATTCTTCTCCAATACTTTGATTAAGAGGAAGTGTCAAAGTTTGTAAAGATAGAATTAAAGAAAAAATCAAAGAAAGGAAGAAGAATTGAAGAAAAAAAGAGTAAAAGAAGTAGAAACAAAATCGAAGCCCTCTTTTTCATACATTCCTAGAATTCTCTTTCAAACTTTCCTTTAAGAATTTACAATTTATAATATTATTATTTATTATTTATTATTTTATTAACTGTGTCCCGCTTCACTCCAACAACAACTCCCTTTTGTTGCCTCTTACCTTTAGGCGATTAAAAAGTTTGTCACCTTTAGGTGGCACCTTGCACCTTGAAAACACCGGTTCATATAATTTTAAATCTCTTTGGTAGGTCTCCTCAACTTTTCTGTTGTGTTTTATAGGTGTCTATTGTGAATCCCATATTCCCATAGGTTTGGTTTCATGCTTGTGCACCAAACACTATACTTGAAAATTGAAATCAACCCATATGGATACCGGCGTACTGCTCAAGTAAGTATTAAGCTAGTGGAGTTAATAATAACATATTTATTAAGCTCGAAGATAAAATGTTTGACACTTTTTGAAGTACAAAGATTAAATTGATACAAACTTGGAAGCCGGGGGTCTATTAGAAAACCTTTAGAATACAGGGGTAAATGGATTCTAAAAGTTTAGGGATGATATTGGTAATTTGGTCTCGGTAGGATAATTCTTAACAGTGTAAAGTGGTTTGTTCAATTTCTTTGCAGCAACATTTGGCGGAAGAGGATAAGCTTGCAAAGCAGCAACAAGAAACACTAAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAAGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATCGAAGCCTTTGAAGCCTTGCTTTTGTAACCTTTTAATGCCATTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGATATTTAGTATAATACACCTAATAACACTCTTGGCTTTTTTTTTTTTTTTAAAAAGAAAAACATTGTATTTTTCCACCTTTCAGAT

mRNA sequence

ATTTTCCCCGATTCTGCACTCCCTTCACCGCCATTTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCCCCCGCCCACAAAGTTGTTCGATCTCCCTCCGTTAGTGGAGATGCGCATAAGCTAGGCCAGACACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGATCCCTTATTAGAGATGGGATCAGCGAAGGATGAGCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTCAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGGGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACTGAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGATAAGCTTGCAAAGCAGCAACAAGAAACACTAAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAAGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATCGAAGCCTTTGAAGCCTTGCTTTTGTAACCTTTTAATGCCATTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGATATTTAGTATAATACACCTAATAACACTCTTGGCTTTTTTTTTTTTTTTAAAAAGAAAAACATTGTATTTTTCCACCTTTCAGAT

Coding sequence (CDS)

ATGGGATCAGCGAAGGATGAGCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTCAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGGGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACTGAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGATAAGCTTGCAAAGCAGCAACAAGAAACACTAAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAAGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

Protein sequence

MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

Homology

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BLAST of PI0017047 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.0e-100
Identity = 188/199 (94.47%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           E DDPDFEVARQIKRL++KHVAEAAFL+KQH+AEE+KLAKQQQETLKGNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
           ADGTAR+LAKHYNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of PI0017047 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.0e-100
Identity = 188/199 (94.47%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSAKDEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           E DDPDFEVARQIKRLT+KHVAEAAFLLKQHLAEE+KLAKQQQETL+GNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
           ADGTAR+LAK+YNMRVSDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of PI0017047 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.4e-89
Identity = 168/199 (84.42%), Postives = 186/199 (93.47%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
            ++DPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LKGNYKKYEI+E VM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
            DGTAR+LA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of PI0017047 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.1e-89
Identity = 168/199 (84.42%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
            +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
            DGTAR+LA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of PI0017047 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.7e-85
Identity = 162/199 (81.41%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSA +EQFA FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAEVEMFDDRP+KPG KISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           +++DPDF+VA+++K  T KH AE AFLLKQ L EE+KLAKQQQE LKGNYKK+EIVESVM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
            DGTAR+LAK Y+MRV DD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

[Close]

BLAST of PI0017047 vs. NCBI nr
Match: XP_008441485.1 (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 6.1e-100
Identity = 188/199 (94.47%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSAKDEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           E DDPDFEVARQIKRLT+KHVAEAAFLLKQHLAEE+KLAKQQQETL+GNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
           ADGTAR+LAK+YNMRVSDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of PI0017047 vs. NCBI nr
Match: XP_004138411.1 (uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical protein Csa_005005 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 6.1e-100
Identity = 188/199 (94.47%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           E DDPDFEVARQIKRL++KHVAEAAFL+KQH+AEE+KLAKQQQETLKGNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
           ADGTAR+LAKHYNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of PI0017047 vs. NCBI nr
Match: XP_038886330.1 (uncharacterized protein LOC120076542 [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.3e-96
Identity = 182/199 (91.46%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQFAMFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+S
Sbjct: 1   MGSMKDEQFAMFEEKVKRTVYVDNLSPHVTEPVLRTALDQFGTVVSVHFIPNYTEPINTS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           E+DDPDFEVA+++K LT KHVAEAAFLLK HLAEE+KLAKQQQE LKGNYKKYEIVESVM
Sbjct: 121 EKDDPDFEVAKKMKLLTRKHVAEAAFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180

Query: 181 ADGTARKLAKHYNMRVSDD 200
           ADGTAR+LAK YNMRVSDD
Sbjct: 181 ADGTARRLAKRYNMRVSDD 199

[Close]

BLAST of PI0017047 vs. NCBI nr
Match: KAG6592987.1 (hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 9.8e-90
Identity = 170/199 (85.43%), Postives = 185/199 (92.96%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 59  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 118

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 119 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 178

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
            +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM
Sbjct: 179 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 238

Query: 181 ADGTARKLAKHYNMRVSDD 200
            DGTAR+LA+ YNMRV+DD
Sbjct: 239 TDGTARRLARRYNMRVADD 257

[Close]

BLAST of PI0017047 vs. NCBI nr
Match: KAG7025396.1 (hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 9.8e-90
Identity = 170/199 (85.43%), Postives = 185/199 (92.96%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
            +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM
Sbjct: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237

Query: 181 ADGTARKLAKHYNMRVSDD 200
            DGTAR+LA+ YNMRV+DD
Sbjct: 238 TDGTARRLARRYNMRVADD 256

[Close]

BLAST of PI0017047 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-49
Identity = 94/195 (48.21%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           + +DPDF+ AR++KRL  KH AE +F+LK+ L E +KL+KQQ ET   ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARKLAKHYNMR 196
            DG A+KLA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

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BLAST of PI0017047 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-48
Identity = 94/195 (48.21%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 1   MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVM 180
           + +DPDF+ AR++KRL  KH AE +F+LK  L E +KL+KQQ ET   ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLK--LEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARKLAKHYNMR 196
            DG A+KLA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 193

The following BLAST results are available for this feature:

BLAST of PI0017047 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7	3.0e-100	94.47	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]
A0A1S3B3J3	3.0e-100	94.47	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A6J1KVQ1	1.4e-89	84.42	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A6J1H6P8	3.1e-89	84.42	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1DB90	2.7e-85	81.41	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of PI0017047 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441485.1	6.1e-100	94.47	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
XP_004138411.1	6.1e-100	94.47	uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical ...	[more]
XP_038886330.1	5.3e-96	91.46	uncharacterized protein LOC120076542 [Benincasa hispida]	[more]
KAG6592987.1	9.8e-90	85.43	hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025396.1	9.8e-90	85.43	hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of PI0017047 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	1.1e-49	48.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	3.4e-48	48.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 e-value: 5.0E-5 score: 32.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..77 e-value: 1.2E-7 score: 31.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..101 score: 11.31529
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..95 e-value: 1.5E-12 score: 49.3
None	No IPR available	PANTHER	PTHR36309:SF1	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 5..198
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 5..198
None	No IPR available	CDD	cd00590	RRM_SF	coord: 20..77 e-value: 4.13384E-9 score: 49.2257
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017047.1	PI0017047.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding