PI0016552 (gene) Melon (PI 482460) v1

Overview


Name	PI0016552
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr12: 9904529 .. 9904879 (-)
RNA-Seq Expression	PI0016552
Synteny	PI0016552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGACGGTGAACAACCGCAATTCGAGCTTGACCCTGAAATTGAGCGAACATTTCGACGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAACAGAAATGCCCCTCCGTCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCGCACGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCTTGTGTTTAGCAAAAACGCTAGCTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGCGGTCATCCTGGGGAGGATCCATACGAGAACATTTAG

mRNA sequence

ATGAGTGACGGTGAACAACCGCAATTCGAGCTTGACCCTGAAATTGAGCGAACATTTCGACGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAACAGAAATGCCCCTCCGTCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCGCACGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCTTGTGTTTAGCAAAAACGCTAGCTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGCGGTCATCCTGGGGAGGATCCATACGAGAACATTTAG

Coding sequence (CDS)

ATGAGTGACGGTGAACAACCGCAATTCGAGCTTGACCCTGAAATTGAGCGAACATTTCGACGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAACAGAAATGCCCCTCCGTCGCATGCTGCCCTAGAACCAAATGCCGCCTACATGGCGCACGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCTTGTGTTTAGCAAAAACGCTAGCTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGCGGTCATCCTGGGGAGGATCCATACGAGAACATTTAG

Protein sequence

MSDGEQPQFELDPEIERTFRRNRRRARQRQARRMENNRNAPPSHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMIQNVGQFGGHPGEDPYENI

Homology

[Close]

BLAST of PI0016552 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 36  NNRNAPPSHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVML 95
           NN+N P      E N AY+AHDLD+PI+SYA+PNLY+FNPGIAYL F +N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 96  QMIQNVGQFGGHPGEDPYENI 117
            M QN GQFGGHP EDPY++I
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHI 82

[Close]

BLAST of PI0016552 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 35  ENNRNAPPSHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVM 94
           +NN+  P + AA   N  Y+A D DRPIRSYA+PNLY+FNPGIAY  FS+N  FEIK VM
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 95  LQMIQNVGQFGGHPGEDPYENI 117
           LQ+IQN GQF  HP +DP++ I
Sbjct: 64  LQIIQNAGQFRRHPRKDPHDYI 85

[Close]

BLAST of PI0016552 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-18
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQ---ARRMENNRNAPPSHAALEPNAAYMAHD 60
           MS+GEQP+F +D EIER F+RNRR+ ++RQ       +NN+ AP + A    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMI 99
            DRPIRS  +PNLY FNPGI Y  F +N  F+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0016552 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-18
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQ---ARRMENNRNAPPSHAALEPNAAYMAHD 60
           MS+GEQP+F +D EIER F+RNRR+ ++RQ       +NN+ AP + A    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMI 99
            DRPIRS  +PNLY FNPGI Y  F +N  F+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0016552 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 36  NNRNAPPSHAAL--EPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPV 95
           N  N  P ++A   + N   +AH+LD PIR+Y + NLY+FN GIAYLVF +NA FE+KPV
Sbjct: 4   NKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKPV 63

Query: 96  MLQMIQNVGQFGGHPGEDPYENI 117
           MLQMIQ  GQF G+ GEDP+E+I
Sbjct: 64  MLQMIQKAGQFDGYQGEDPHEHI 86

[Close]

BLAST of PI0016552 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 36  NNRNAPPSHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVML 95
           NN+N P      E N AY+AHDLD+PI+SYA+PNLY+FNPGIAYL F +N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 96  QMIQNVGQFGGHPGEDPYENI 117
            M QN GQFGGHP EDPY++I
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHI 82

[Close]

BLAST of PI0016552 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQARR-----MENNRNAPPS------------ 60
           MS+G+ P F++DPEIERTFRR  R+ +QR++ +     M+   N P +            
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  -HAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMIQNVG 117
            HA  + N   +AHD +RP+R YA+PNLYNF PGI    F  N  FE+KPVMLQM+Q  G
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

[Close]

BLAST of PI0016552 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-19
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 35  ENNRNAPPSHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVM 94
           +NN+  P + AA   N  Y+A D DRPIRSYA+PNLY+FNPGIAY  FS+N  FEIK VM
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 95  LQMIQNVGQFGGHPGEDPYENI 117
           LQ+IQN GQF  HP +DP++ I
Sbjct: 64  LQIIQNAGQFRRHPRKDPHDYI 85

[Close]

BLAST of PI0016552 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-18
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQ---ARRMENNRNAPPSHAALEPNAAYMAHD 60
           MS+GEQP+F +D EIER F+RNRR+ ++RQ       +NN+ AP + A    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMI 99
            DRPIRS  +PNLY FNPGI Y  F +N  F+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0016552 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-18
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQ---ARRMENNRNAPPSHAALEPNAAYMAHD 60
           MS+GEQP+F +D EIER F+RNRR+ ++RQ       +NN+ AP + A    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRPIRSYAAPNLYNFNPGIAYLVFSKNASFEIKPVMLQMI 99
            DRPIRS  +PNLY FNPGI Y  F +N  F+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

The following BLAST results are available for this feature:

BLAST of PI0016552 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDN8	2.9e-23	65.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2U7	1.9e-19	60.98	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CAB5	4.8e-18	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UXZ2	4.8e-18	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3BVN1	3.1e-17	57.83	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of PI0016552 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051815.1	6.0e-23	65.43	hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142...	[more]
WP_217833177.1	1.1e-21	46.27	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
KAA0062403.1	4.0e-19	60.98	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
TYK08803.1	9.9e-18	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0060833.1	9.9e-18	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of PI0016552 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016552.1	PI0016552.1	mRNA