PI0016473 (gene) Melon (PI 482460) v1

Overview


Name	PI0016473
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr07: 20015301 .. 20015927 (+)
RNA-Seq Expression	PI0016473
Synteny	PI0016473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGAGTCCTTGGGTCATGGGAAAAAAAGGGCGACTATCAAGTGGATTATTAACGGTATCAACCCATCCATTGTCATCCTCCAAGAAACTAAAAGTTGAGACGTTGATCAATTATTCATCAAATCTCTTTGGAGTTCTAGAGGCATGAATGGACTTCTTTGGATGCTGTTAGATCATCGGGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGTCTCTTCTATAACTAAAGGTGCACAGTCCCTAACTGTCCTTTTCACTTTGGCCGATGGTTTCAATTTCTGGTTAATAGGTGTTTACGGACCATCTACTGATTCTGAGAATTGACTTATTGGGGTAGATTTCAACCTCATCAGATGGCCACAGGAAAAATCCAACTAATATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATCTTATTGATTTGCCCCTTTCGAATGGCAGCTATACATGGACAGATTTCAGAAATCCACCAACTCATACCAAGATCGATATTCCTATACACAGAAACCACGATTAACAAATCCAGTGATGCTTTTGTCAATACGCTTGACTTGTCCCTTCTCTTGACTCTTGGTAAATATCTGGATCGGCCCTAA

mRNA sequence

ATGTTAGAGTCCTTGGGTCATGGGAAAAAAAGGGCGACTATCAAGTGGATTATTAACGGTATCAACCCATCCATTAGGCATGAATGGACTTCTTTGGATGCTGTTAGATCATCGGGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGTCTCTTCTATAACTAAAGGTGCACAGTCCCTAACTGTCCTTTTCACTTTGGCCGATGGTTTCAATTTCTGGTTAATAGGTATTTCAACCTCATCAGATGGCCACAGGAAAAATCCAACTAATATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATCTTATTGATTTGCCCCTTTCGAATGGCAGCTATACATGGACAGATTTCAGAAATCCACCAACTCATACCAAGATCGATATTCCTATACACAGAAACCACGATTAACAAATCCAGTGATGCTTTTGTCAATACGCTTGACTTGTCCCTTCTCTTGACTCTTGGTAAATATCTGGATCGGCCCTAA

Coding sequence (CDS)

ATGTTAGAGTCCTTGGGTCATGGGAAAAAAAGGGCGACTATCAAGTGGATTATTAACGGTATCAACCCATCCATTAGGCATGAATGGACTTCTTTGGATGCTGTTAGATCATCGGGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGTCTCTTCTATAACTAAAGGTGCACAGTCCCTAACTGTCCTTTTCACTTTGGCCGATGGTTTCAATTTCTGGTTAATAGGTATTTCAACCTCATCAGATGGCCACAGGAAAAATCCAACTAATATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATCTTATTGATTTGCCCCTTTCGAATGGCAGCTATACATGGACAGATTTCAGAAATCCACCAACTCATACCAAGATCGATATTCCTATACACAGAAACCACGATTAACAAATCCAGTGATGCTTTTGTCAATACGCTTGACTTGTCCCTTCTCTTGACTCTTGGTAAATATCTGGATCGGCCCTAA

Protein sequence

MLESLGHGKKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGISTSSDGHRKNPTNIDLLEKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPRSIFLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP

Homology

[Close]

BLAST of PI0016473 vs. ExPASy TrEMBL
Match: A0A0A0L0H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358720 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 101/148 (68.24%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 9   KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTL 68
           +KRATIKWI+N                   GGILIMWSAASF VSSITKGA SLTVLFTL
Sbjct: 2   EKRATIKWIVN-------------------GGILIMWSAASFMVSSITKGAHSLTVLFTL 61

Query: 69  ADGFNFWLIGI---------------STSSDGHRKNPTNIDLLEKCRHSILLLNKGILLI 128
           ADGF+FWLIG+               ST SDGHRKNPT IDL EKCRHSILLLNKGILLI
Sbjct: 62  ADGFSFWLIGVYGLTTDSENWLIGRDSTFSDGHRKNPTIIDLQEKCRHSILLLNKGILLI 121

Query: 129 CPFRMAAIHGQISEIHQLIPRSIFLYTE 142
           CPFRMAAIHGQISEIHQLIPR I  YT+
Sbjct: 122 CPFRMAAIHGQISEIHQLIPRLIDSYTQ 130

[Close]

BLAST of PI0016473 vs. ExPASy TrEMBL
Match: A0A5D3BU88 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00280 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 137  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP 171
            FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Sbjct: 1623 FLYTETMINKFSDAFVNRLDFSLLLTLGKYVDRP 1656

[Close]

BLAST of PI0016473 vs. ExPASy TrEMBL
Match: A0A5A7U8I6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00460 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 137  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP 171
            FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Sbjct: 976  FLYTETMINKFSDAFVNRLDFSLLLTLGKYVDRP 1009

[Close]

BLAST of PI0016473 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 2   LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSS 61
           +  LG   KRATIK  I  + P                       SI   W SLDA  +S
Sbjct: 8   VRGLGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGAS 67

Query: 62  GGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI 80
           GGI+++W   S S   +  G  S++V F LAD F +WL G+
Sbjct: 68  GGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGV 108

[Close]

BLAST of PI0016473 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-04
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 16  WIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFW 75
           W  +GIN      W++LDA   + GILI+W+      + + +G  SLT+ F L+DGF FW
Sbjct: 51  WSAHGIN------WSALDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFW 110

Query: 76  LIGI---STSSDGHRKNPTNIDLLEKCRHSILL 106
           + GI   ST+   +      +DL + C +  +L
Sbjct: 111 VSGIYGPSTTEFHYLFWQELLDLSDLCENHWIL 137

[Close]

BLAST of PI0016473 vs. NCBI nr
Match: KGN54534.1 (hypothetical protein Csa_012101 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-42
Identity = 101/148 (68.24%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 9   KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTL 68
           +KRATIKWI+N                   GGILIMWSAASF VSSITKGA SLTVLFTL
Sbjct: 2   EKRATIKWIVN-------------------GGILIMWSAASFMVSSITKGAHSLTVLFTL 61

Query: 69  ADGFNFWLIGI---------------STSSDGHRKNPTNIDLLEKCRHSILLLNKGILLI 128
           ADGF+FWLIG+               ST SDGHRKNPT IDL EKCRHSILLLNKGILLI
Sbjct: 62  ADGFSFWLIGVYGLTTDSENWLIGRDSTFSDGHRKNPTIIDLQEKCRHSILLLNKGILLI 121

Query: 129 CPFRMAAIHGQISEIHQLIPRSIFLYTE 142
           CPFRMAAIHGQISEIHQLIPR I  YT+
Sbjct: 122 CPFRMAAIHGQISEIHQLIPRLIDSYTQ 130

[Close]

BLAST of PI0016473 vs. NCBI nr
Match: TYK01796.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 137  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP 171
            FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Sbjct: 1623 FLYTETMINKFSDAFVNRLDFSLLLTLGKYVDRP 1656

[Close]

BLAST of PI0016473 vs. NCBI nr
Match: KAA0052233.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 137  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP 171
            FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Sbjct: 976  FLYTETMINKFSDAFVNRLDFSLLLTLGKYVDRP 1009

[Close]

BLAST of PI0016473 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 35/101 (34.65%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 2   LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSS 61
           +  LG   KRATIK  I  + P                       SI   W SLDA  +S
Sbjct: 8   VRGLGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGAS 67

Query: 62  GGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI 80
           GGI+++W   S S   +  G  S++V F LAD F +WL G+
Sbjct: 68  GGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGV 108

The following BLAST results are available for this feature:

BLAST of PI0016473 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0H8	1.4e-42	68.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358720 PE=4 SV=1	[more]
A0A5D3BU88	8.1e-06	85.29	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U8I6	8.1e-06	85.29	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1CVN2	2.0e-04	34.65	uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1E2G6	9.8e-04	34.41	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of PI0016473 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54534.1	2.9e-42	68.24	hypothetical protein Csa_012101 [Cucumis sativus]	[more]
TYK01796.1	1.7e-05	85.29	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0052233.1	1.7e-05	85.29	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_022145142.1	4.1e-04	34.65	uncharacterized protein LOC111014657 [Momordica charantia]	[more]

BLAST of PI0016473 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016473.1	PI0016473.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding