PI0016218 (gene) Melon (PI 482460) v1

Overview


Name	PI0016218
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr12: 15138761 .. 15139545 (-)
RNA-Seq Expression	PI0016218
Synteny	PI0016218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGCCCTATCCACCAAGTCCAAATAATTACCACTCCTACTTCCCCGCGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGATCAAACTACCTTTTCGCCCAACATTGTTTTTGATGCCCAACTTAACGAAGGGATTGATGGCTTCATGCAAGAACTCTGCGATACAGAATTTGATGCTGAAGATTTTAGAGAAGCAAAGGACACGACTCTAGTTCCTGATGAGTCACAACAAACAAAGTTCTTGAGGAGACAGTTGATGACCCAATCCCCAAAGGTAAAGAAATAGCCTATGCGGAAGCTGGTGAAACGCGAGCTCCTTCACCGCCGAAGCAAACGAAAGACCAACAAAACATTGGGGCGGAAGAAAATGACGATGAAGATTTTTACAAGTTCATCAATGAGGCGATTGGAAAGCCAATGATAGATGGACTTGAAGATATCTTCCAAAACCAAGCCAATCTACATGAACATGCGATAAGACATGAAAAGAAAATTTCGAATTTGGAGTTAAAAATTGACAACCATCATCAATCCCAACATGACCAACTCGCCTCTGAGATTGCAAGCCTGAAGGAGCAAAATAAGGCGATGGTAACTTTAATCAAGAAAGCTTCATTGCGGTCTAACAGGCAATACAAATCAATGATGAACTATATTCACGTGGCCATCACAAGTCTCGTGCCCAAGCTTGCCATACTGCCTGAATTCAAAAAACCCCTTTCAGACGTTGAATTGAACGTCGTGCCAGGACCTTCTGAATTGCAGCTATAA

mRNA sequence

ATGCCAAGCCCTATCCACCAAGTCCAAATAATTACCACTCCTACTTCCCCGCGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGATCAAACTACCTTTTCGCCCAACATTGTTTTTGATGCCCAACTTAACGAAGGGATTGATGGCTTCATGCAAGAACTCTGCGATACAGAATTTGATGCTGAAGATTTTAGAGAAGCAAAGGACACGACTCTAGAGACAGTTGATGACCCAATCCCCAAAGGTAAAGAAATAGCCTATGCGGAAGCTGGTGAAACGCGAGCTCCTTCACCGCCGAAGCAAACGAAAGACCAACAAAACATTGGGGCGGAAGAAAATGACGATGAAGATTTTTACAAGTTCATCAATGAGGCGATTGGAAAGCCAATGATAGATGGACTTGAAGATATCTTCCAAAACCAAGCCAATCTACATGAACATGCGATAAGACATGAAAAGAAAATTTCGAATTTGGAGTTAAAAATTGACAACCATCATCAATCCCAACATGACCAACTCGCCTCTGAGATTGCAAGCCTGAAGGAGCAAAATAAGGCGATGGTAACTTTAATCAAGAAAGCTTCATTGCGGTCTAACAGGCAATACAAATCAATGATGAACTATATTCACGTGGCCATCACAAGTCTCGTGCCCAAGCTTGCCATACTGCCTGAATTCAAAAAACCCCTTTCAGACGTTGAATTGAACGTCGTGCCAGGACCTTCTGAATTGCAGCTATAA

Coding sequence (CDS)

ATGCCAAGCCCTATCCACCAAGTCCAAATAATTACCACTCCTACTTCCCCGCGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGATCAAACTACCTTTTCGCCCAACATTGTTTTTGATGCCCAACTTAACGAAGGGATTGATGGCTTCATGCAAGAACTCTGCGATACAGAATTTGATGCTGAAGATTTTAGAGAAGCAAAGGACACGACTCTAGAGACAGTTGATGACCCAATCCCCAAAGGTAAAGAAATAGCCTATGCGGAAGCTGGTGAAACGCGAGCTCCTTCACCGCCGAAGCAAACGAAAGACCAACAAAACATTGGGGCGGAAGAAAATGACGATGAAGATTTTTACAAGTTCATCAATGAGGCGATTGGAAAGCCAATGATAGATGGACTTGAAGATATCTTCCAAAACCAAGCCAATCTACATGAACATGCGATAAGACATGAAAAGAAAATTTCGAATTTGGAGTTAAAAATTGACAACCATCATCAATCCCAACATGACCAACTCGCCTCTGAGATTGCAAGCCTGAAGGAGCAAAATAAGGCGATGGTAACTTTAATCAAGAAAGCTTCATTGCGGTCTAACAGGCAATACAAATCAATGATGAACTATATTCACGTGGCCATCACAAGTCTCGTGCCCAAGCTTGCCATACTGCCTGAATTCAAAAAACCCCTTTCAGACGTTGAATTGAACGTCGTGCCAGGACCTTCTGAATTGCAGCTATAA

Protein sequence

MPSPIHQVQIITTPTSPRQEENPQSLVTQALDQTTFSPNIVFDAQLNEGIDGFMQELCDTEFDAEDFREAKDTTLETVDDPIPKGKEIAYAEAGETRAPSPPKQTKDQQNIGAEENDDEDFYKFINEAIGKPMIDGLEDIFQNQANLHEHAIRHEKKISNLELKIDNHHQSQHDQLASEIASLKEQNKAMVTLIKKASLRSNRQYKSMMNYIHVAITSLVPKLAILPEFKKPLSDVELNVVPGPSELQL

Homology

[Close]

BLAST of PI0016218 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 41  VFDAQLNEGIDGFMQE-----LCD-TEFDAEDFREAKDTTL------------ETVDDPI 100
           +FD  L +  D  +Q+     LCD   F  +  +E+++TTL            + +DDP+
Sbjct: 38  IFDDPLADQGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPL 97

Query: 101 PKGKEIAYAEAGETRAPSPPKQ--------TKDQQNIGAEENDDEDFYKFINEAIGKPMI 160
            K K++   +A +TR PSPPKQ        TK ++ I  +++DDE ++KFINE + +P+ 
Sbjct: 98  QKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLR 157

Query: 161 DGLEDIFQNQANLHEHAIRHEKKISNLELKIDN 168
            G ED+FQ QANL E  ++++K + +LELK D+
Sbjct: 158 YGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

[Close]

BLAST of PI0016218 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 41  VFDAQLNEGIDGFMQE-----LCD-TEFDAEDFREAKDTTL------------ETVDDPI 100
           +FD  L +  D  +Q+     LCD   F  +  +E+++TTL            + +DDP+
Sbjct: 83  IFDDPLADQGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPL 142

Query: 101 PKGKEIAYAEAGETRAPSPPKQ--------TKDQQNIGAEENDDEDFYKFINEAIGKPMI 160
            K K++   +A +TR PSPPKQ        TK ++ I  +++DDE ++KFINE + +P+ 
Sbjct: 143 QKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLR 202

Query: 161 DGLEDIFQNQANLHEHAIRHEKKISNLELKIDN 168
            G ED+FQ QANL E  ++++K + +LELK D+
Sbjct: 203 YGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 235

[Close]

BLAST of PI0016218 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-13
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 91  AEAGETRAPSPPKQTKDQQNIGAEENDDED-FYKFINEAIGKPMIDGLEDIFQNQANLHE 150
           A  GET AP P KQ  +QQ   A E+D+ED ++KFI +  GKP++DG +D+FQNQ +L E
Sbjct: 9   ASQGETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQE 68

Query: 151 HAIRHEKKISNLELKIDN---HHQ 171
              RHEK+I +LELKIDN   HHQ
Sbjct: 69  CTWRHEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0016218 vs. ExPASy TrEMBL
Match: A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-13
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 61  EFDAEDFREAKDTTLETVDDPIPKGKEIAYAEAGETRAPSPPKQTKDQQNIGAEENDDED 120
           E   E +   KD + E VDD + KGK+IAY + GE   PSP KQT +QQ+    E+DDED
Sbjct: 43  EATLEKWGVTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDED 102

Query: 121 -FYKFINEAIGKPMIDGLEDIFQNQANLHE 150
            ++KFI++  GKPM+D LEDIFQ Q++L E
Sbjct: 103 QYFKFISDTFGKPMMDELEDIFQIQSDLQE 132

[Close]

BLAST of PI0016218 vs. ExPASy TrEMBL
Match: A0A5D3DS12 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00130 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-12
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 99  PSPPKQTKDQQNIGAEENDDEDFYKFINEAIGKPMIDGLEDIFQNQANLHEHAIRHEKKI 158
           PSPPK              D++++KFI    GKPM DG EDIFQ QANL E  +R +K++
Sbjct: 5   PSPPKY-------------DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQL 64

Query: 159 SNLELKIDN---HHQSQHDQLASEIASLKEQNKAMVTLIKKASLRSNR 204
            NLEL+IDN    HQ+Q D +  +I SLK QN+A+ TLIK+AS ++NR
Sbjct: 65  QNLELRIDNKDLRHQAQLDIIEVDI-SLKTQNRALNTLIKRASSQTNR 97

[Close]

BLAST of PI0016218 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-12
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 41  VFDAQLNEGIDGFMQE-----LCD-TEFDAEDFREAKDTTL------------ETVDDPI 100
           +FD  L +  D  +Q+     LCD   F  +  +E+++TTL            + +DDP+
Sbjct: 38  IFDDPLADQGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPL 97

Query: 101 PKGKEIAYAEAGETRAPSPPKQ--------TKDQQNIGAEENDDEDFYKFINEAIGKPMI 160
            K K++   +A +TR PSPPKQ        TK ++ I  +++DDE ++KFINE + +P+ 
Sbjct: 98  QKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLR 157

Query: 161 DGLEDIFQNQANLHEHAIRHEKKISNLELKIDN 168
            G ED+FQ QANL E  ++++K + +LELK D+
Sbjct: 158 YGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

[Close]

BLAST of PI0016218 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-12
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 41  VFDAQLNEGIDGFMQE-----LCD-TEFDAEDFREAKDTTL------------ETVDDPI 100
           +FD  L +  D  +Q+     LCD   F  +  +E+++TTL            + +DDP+
Sbjct: 83  IFDDPLADQGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPL 142

Query: 101 PKGKEIAYAEAGETRAPSPPKQ--------TKDQQNIGAEENDDEDFYKFINEAIGKPMI 160
            K K++   +A +TR PSPPKQ        TK ++ I  +++DDE ++KFINE + +P+ 
Sbjct: 143 QKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLR 202

Query: 161 DGLEDIFQNQANLHEHAIRHEKKISNLELKIDN 168
            G ED+FQ QANL E  ++++K + +LELK D+
Sbjct: 203 YGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 235

[Close]

BLAST of PI0016218 vs. NCBI nr
Match: TYK23898.1 (gag-pol [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 61  EFDAEDFREAKDTTLETVDDPIPKGKEIAYAEAGETRAPSPPKQTKDQQNIGAEENDDED 120
           E   E +   KD + E VDD + KGK+IAY + GE   PSP KQT +QQ+    E+DDED
Sbjct: 43  EATLEKWGVTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDED 102

Query: 121 -FYKFINEAIGKPMIDGLEDIFQNQANLHE 150
            ++KFI++  GKPM+D LEDIFQ Q++L E
Sbjct: 103 QYFKFISDTFGKPMMDELEDIFQIQSDLQE 132

[Close]

BLAST of PI0016218 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 91  AEAGETRAPSPPKQTKDQQNIGAEENDDED-FYKFINEAIGKPMIDGLEDIFQNQANLHE 150
           A  GET AP P KQ  +QQ   A E+D+ED ++KFI +  GKP++DG +D+FQNQ +L E
Sbjct: 9   ASQGETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQE 68

Query: 151 HAIRHEKKISNLELKIDN---HHQ 171
              RHEK+I +LELKIDN   HHQ
Sbjct: 69  CTWRHEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0016218 vs. NCBI nr
Match: TYK26456.1 (hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 99  PSPPKQTKDQQNIGAEENDDEDFYKFINEAIGKPMIDGLEDIFQNQANLHEHAIRHEKKI 158
           PSPPK              D++++KFI    GKPM DG EDIFQ QANL E  +R +K++
Sbjct: 5   PSPPKY-------------DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQL 64

Query: 159 SNLELKIDN---HHQSQHDQLASEIASLKEQNKAMVTLIKKASLRSNR 204
            NLEL+IDN    HQ+Q D +  +I SLK QN+A+ TLIK+AS ++NR
Sbjct: 65  QNLELRIDNKDLRHQAQLDIIEVDI-SLKTQNRALNTLIKRASSQTNR 97

The following BLAST results are available for this feature:

BLAST of PI0016218 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1H0	5.8e-13	35.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	5.8e-13	35.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0L9	7.6e-13	54.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DK59	7.6e-13	51.11	Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S...	[more]
A0A5D3DS12	8.4e-12	49.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0016218 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29776.1	1.2e-12	35.95	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	1.2e-12	35.95	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]
TYK23898.1	1.6e-12	51.11	gag-pol [Cucumis melo var. makuwa]	[more]
KAA0047757.1	1.6e-12	54.76	hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023...	[more]
TYK26456.1	1.7e-11	49.07	hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa]	[more]

BLAST of PI0016218 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016218.1	PI0016218.1	mRNA