PI0016213 (gene) Melon (PI 482460) v1

Overview


Name	PI0016213
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	thionin-like protein 2
Location	chr01: 27499860 .. 27500789 (-)
RNA-Seq Expression	PI0016213
Synteny	PI0016213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAAAATAAAGTTAAGGCTTTTCATTTAGATCCTCATCATCAATCATCAATAAACATCAATATTATGGAGAGCAGCAATATGGCAATGAAATGTGCTTTAGTTGCATCGCTATTCCTGAGCTTGCTCTCCATGGCCAATTCTTATACCTCTTTTCAAGACTGTTACGGCACCTGTGTCGTCACATGCGCCGTCACGCCCGGCATTCCTGTCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATCTCATCTCCGGGACACAGCTGGGAAATCAATTCTCTTGCGTGCTCGATTGCGCATATCCCTCGTGTACCAAGTTTACCACAAAGGAAGATCCAGGTTCGAAATTTACACTTCTTCGCTTTTTTTTTATTTGCTAACGAAACGTGGGAGACAGGTTGAAGAGGATTGTGTTAAAATTAATATTATTTTTCTCTAATTTTCCTTCTTTAACATTATTTTTTATTTGGAAGATTAAGTTTTTTGGTTGATACACAATATTTGAAGTTAATTAGTTTTATTTGTTTTTGTTGATGCAGCTGCAAAAGAAGTGGGGAGCTGTGTAGATTCTTGCTCTCAAAAATGTTCCAAGATTTGATGATGTGATGATGTGGATCTCCTAAATGGAAGCCAATTAACTATTTTTTTCATTAAAAAATAAGTACAATTTGTAAGAAATGTATTGTGCTTTATTATAAATGAAACATCATTATTCTTGGAATTAATTTCTTTCTATACTAATGATCAAAAATTGGGTTCAATTGTTAGCACCGAAAATTTGGGGTAGGTTTGGATTGTCTATGAGAAAAAGTGTTTTTAAAAATACATTTTTTTAAGAAAAAAAAAACTCTCTTTTATAACATGTGTTTGGGAGGTGTTACGATAAGGTTAGTGTTACGATAACCCAAAC

mRNA sequence

GAGAGAAAATAAAGTTAAGGCTTTTCATTTAGATCCTCATCATCAATCATCAATAAACATCAATATTATGGAGAGCAGCAATATGGCAATGAAATGTGCTTTAGTTGCATCGCTATTCCTGAGCTTGCTCTCCATGGCCAATTCTTATACCTCTTTTCAAGACTGTTACGGCACCTGTGTCGTCACATGCGCCGTCACGCCCGGCATTCCTGTCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATCTCATCTCCGGGACACAGCTGGGAAATCAATTCTCTTGCGTGCTCGATTGCGCATATCCCTCGTGTACCAAGTTTACCACAAAGGAAGATCCAGCTGCAAAAGAAGTGGGGAGCTGTGTAGATTCTTGCTCTCAAAAATGTTCCAAGATTTGATGATGTGATGATGTGGATCTCCTAAATGGAAGCCAATTAACTATTTTTTTCATTAAAAAATAAGTACAATTTGTAAGAAATGTATTGTGCTTTATTATAAATGAAACATCATTATTCTTGGAATTAATTTCTTTCTATACTAATGATCAAAAATTGGGTTCAATTGTTAGCACCGAAAATTTGGGGTAGGTTTGGATTGTCTATGAGAAAAAGTGTTTTTAAAAATACATTTTTTTAAGAAAAAAAAAACTCTCTTTTATAACATGTGTTTGGGAGGTGTTACGATAAGGTTAGTGTTACGATAACCCAAAC

Coding sequence (CDS)

ATGGAGAGCAGCAATATGGCAATGAAATGTGCTTTAGTTGCATCGCTATTCCTGAGCTTGCTCTCCATGGCCAATTCTTATACCTCTTTTCAAGACTGTTACGGCACCTGTGTCGTCACATGCGCCGTCACGCCCGGCATTCCTGTCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATCTCATCTCCGGGACACAGCTGGGAAATCAATTCTCTTGCGTGCTCGATTGCGCATATCCCTCGTGTACCAAGTTTACCACAAAGGAAGATCCAGCTGCAAAAGAAGTGGGGAGCTGTGTAGATTCTTGCTCTCAAAAATGTTCCAAGATTTGA

Protein sequence

MESSNMAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKTANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCSKI

Homology

[Close]

BLAST of PI0016213 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 30  FQDCYGTCVVTCAVTPGIP-VSECPKRCFKTCWSKTA--NLISGTQLGNQFSCVLDCAYP 89
           F++CY  C+V C      P   +CP  C K C  + +  ++ S     + + C L CA  
Sbjct: 25  FKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATY 84

Query: 90  SCTKFTTKEDPAAKEVGSCVDSCSQKCSK 116
            C   ++ ++P  + V +CVDSCS KC+K
Sbjct: 85  HCVSLSSIQNPNVERVSACVDSCSNKCTK 113

[Close]

BLAST of PI0016213 vs. ExPASy TrEMBL
Match: A0A0A0KAC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MESSNMAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTC 60
          MESSNM MKCAL A LFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSEC KRCFKTC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

[Close]

BLAST of PI0016213 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.2e-22
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 6   MAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKT- 65
           +A K AL+A L L+ LS ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  ----ANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
               A+++   Q  N F C L CA  SCTKF+TK++P  ++VG CVDSCSQ CS
Sbjct: 65  PIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCS 117

[Close]

BLAST of PI0016213 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.9e-21
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 9   KCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTC-------W 68
           K  L+A L LS L+ ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C        
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  SKTANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
           +  A+     Q  NQF C L CA  SCTKF+T ++PA K+VGSCVDSCS+ CS
Sbjct: 67  NAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTCS 118

[Close]

BLAST of PI0016213 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 9   KCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKTANLI 68
           K  L+A L LS L+ ANS TSFQ+CY TC + CA+TPG+  S+CP RC + C   +  + 
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  SGT------QLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
           +        Q  NQF C L CA  SCTKF+T+++PA K+VGSCVDSCS+ CS
Sbjct: 67  NAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 117

[Close]

BLAST of PI0016213 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-20
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 6   MAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKT- 65
           +A K AL+A L L+ LS ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  ----ANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
                +++   +  N F C L CA  SCTKF+TK++P  ++V  CVDSCSQ CS
Sbjct: 65  PIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCS 117

[Close]

BLAST of PI0016213 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-24
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 6   MAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKTA 65
           MA K AL+A L LS LS ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 1   MAKKWALIAWLLLSSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSF 60

Query: 66  NLISG---TQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
            + +     Q  NQF C L CA  SCTKF+TK++PA KEVG+CVDSCSQ CS
Sbjct: 61  PIDNNDVHRQEQNQFFCKLGCAVSSCTKFSTKQNPAEKEVGNCVDSCSQTCS 111

[Close]

BLAST of PI0016213 vs. NCBI nr
Match: KGN45342.1 (hypothetical protein Csa_016718 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.6e-22
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MESSNMAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTC 60
          MESSNM MKCAL A LFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSEC KRCFKTC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

[Close]

BLAST of PI0016213 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.7e-22
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 6   MAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKT- 65
           +A K AL+A L L+ LS ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  ----ANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
               A+++   Q  N F C L CA  SCTKF+TK++P  ++VG CVDSCSQ CS
Sbjct: 65  PIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCS 117

[Close]

BLAST of PI0016213 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 9   KCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTC-------W 68
           K  L+A L LS L+ ANS TSFQ+CY TC V CA+TPG+  S+CP RC + C        
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  SKTANLISGTQLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
           +  A+     Q  NQF C L CA  SCTKF+T ++PA K+VGSCVDSCS+ CS
Sbjct: 67  NAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTCS 118

[Close]

BLAST of PI0016213 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 9   KCALVASLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECPKRCFKTCWSKTANLI 68
           K  L+A L LS L+ ANS TSFQ+CY TC + CA+TPG+  S+CP RC + C   +  + 
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  SGT------QLGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKCS 115
           +        Q  NQF C L CA  SCTKF+T+++PA K+VGSCVDSCS+ CS
Sbjct: 67  NAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 117

[Close]

BLAST of PI0016213 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. )

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-09
Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 30  FQDCYGTCVVTCAVTPGIP-VSECPKRCFKTCWSKTA--NLISGTQLGNQFSCVLDCAYP 89
           F++CY  C+V C      P   +CP  C K C  + +  ++ S     + + C L CA  
Sbjct: 25  FKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATY 84

Query: 90  SCTKFTTKEDPAAKEVGSCVDSCSQKCSK 116
            C   ++ ++P  + V +CVDSCS KC+K
Sbjct: 85  HCVSLSSIQNPNVERVSACVDSCSNKCTK 113

[Close]

BLAST of PI0016213 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 21/61 (34.43%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 56  CFKTCWSKTANLISGTQ--LGNQFSCVLDCAYPSCTKFTTKEDPAAKEVGSCVDSCSQKC 115
           C KTC    ++ +  T     N + C L C+   C   ++ ++P   +V  CVDSCS KC
Sbjct: 41  CIKTCLEPPSSQMDSTNEINHNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCSDKC 100

[Close]

BLAST of PI0016213 vs. TAIR 10
Match: AT1G12660.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 34/102 (33.33%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 1  MESSNMAMKCALVASLFLSLLSMANSYTSFQDCYGTCVVTCA-VTPGIPVSECPKRCFKT 60
          ME   +AM   ++  +  ++L  A +  SF+ CYG C+V CA + P I    CP  C K 
Sbjct: 1  MEDKRVAMLVVMML-VMGNMLIEAEAVMSFKLCYGGCLVACALIAPPIKKLFCPFLCIKD 60

Query: 61 C-----WSKTANLISGTQLGNQFSCVLDCAYPSCTKFTTKED 97
          C      S  ANL    Q G+   C L CA   C   ++ +D
Sbjct: 61 CKRRPMLSFEANLNEIDQTGSY--CELGCATDRCVSSSSIDD 99

The following BLAST results are available for this feature:

BLAST of PI0016213 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MRP4	1.3e-07	32.58	Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1	[more]

BLAST of PI0016213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAC5	3.2e-22	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1	[more]
A0A0A0K781	4.2e-22	51.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
A0A6J1GMH5	7.9e-21	52.21	thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1	[more]
A0A6J1JZ84	1.0e-20	50.89	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1	[more]
A0A1S3CDU4	5.1e-20	49.12	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]

BLAST of PI0016213 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899383.1	7.1e-24	57.14	thionin-like protein 2 [Benincasa hispida]	[more]
KGN45342.1	6.6e-22	93.33	hypothetical protein Csa_016718 [Cucumis sativus]	[more]
XP_011659556.1	8.7e-22	51.75	thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01...	[more]
XP_022953260.1	1.6e-20	52.21	thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein...	[more]
XP_022992447.1	2.1e-20	50.89	thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2...	[more]

BLAST of PI0016213 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12663.1	9.0e-09	32.58	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant t...	[more]
AT1G12672.2	1.0e-04	34.43	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT1G12660.1	3.0e-04	33.33	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant t...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 2..115
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016213.1	PI0016213.1	mRNA