Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTACCTGTCGGAATTTCCAGACACCGTCTGCTTCTTGGAAGGTCAGATTGAAGAAGTTTTCGAGAAAGCTGACGCTATTGATGCAGTGACCGGTCGCCTCGATGGTTTACCTATAAAGGAGTTGTTAACAAGAGTTGACACTCTAAAGGCAAAGGCTACAAGAACTAGTAACTACGAGCGTGGGGACAATTCAACGGGCTCTATTGCCCACATAGAAGAATGGATTGGCGAGCTAGATTGCTCCCAAAAGTCGATTGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGTCGCTTTTGATGTCGTCGGGAATGGGATAGGAGACGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAATAGGGTGAAAATCCTCGAACCCAAACCCTTCTGTGGGGCAAGGTATGTCGAGATCCAAGAGGGACGATGTACGATAGACACTTAGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCAACGGAAGTTACGTGAACTAAAACACACCGGTAGCATTCGGGAGTATGTGAAGCAATTTGCGGGACTGATGTTAGACATACGCAATATGTCCGAGAAAGACAAAAAATTTTGTTTTGTCGAAGGCCTTAAATCGTGGGCGAAGACCAAACTGTATGAACAGGGGGTCCAAGAAATCTTGTCGGCATACGCAGCGGCAGAGCGACTGTTTGATCTGTCCCATGACTCTCAAGATGAGAGCCGTCATCCAAGTCCCTCACCTGAAAGAAATGAGAACGATCGTGCAAGTTCTCCAAAGGTCGGAGGGGGAGATAAACGATCTAGTGGTGATCGTAGGCGCTTCCAATCAAACCCGGGAGTTCGGGGCGAAGACAGAACCACCAGAACCCTCGCAATCGTCCCCCTGCCTGTTTCATATGTAAGGGGCTGCACGTGGCGAGAGAATGTCCGAATCGGACCGCCTTCTATGCCTTTCAAGCTGCCTTAG
mRNA sequence
ATGCTCTACCTGTCGGAATTTCCAGACACCGTCTGCTTCTTGGAAGGTCAGATTGAAGAAGTTTTCGAGAAAGCTGACGCTATTGATGCAGTGACCGGTCGCCTCGATGGTTTACCTATAAAGGAGTTGTTAACAAGAGTTGACACTCTAAAGGCAAAGGCTACAAGAACTAGTAACTACGAGCGTGGGGACAATTCAACGGGCTCTATTGCCCACATAGAAGAATGGATTGGCGAGCTAGATTGCTCCCAAAAGTCGATTGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGTCGCTTTTGATGTCGTCGGGAATGGGATAGGAGACGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAATAGGGTGAAAATCCTCGAACCCAAACCCTTCTGTGGGGCAAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCAACGGAAGTTACGTGAACTAAAACACACCGGTAGCATTCGGGAGTATGTGAAGCAATTTGCGGGACTGATGTTAGACATACGCAATATGTCCGAGAAAGACAAAAAATTTTGTTTTGTCGAAGGCCTTAAATCGTGGGCGAAGACCAAACTGTATGAACAGGGGGTCCAAGAAATCTTGTCGGCATACGCAGCGGCAGAGCGACTGTTTGATCTGTCCCATGACTCTCAAGATGAGAGCCGTCATCCAAGTCCCTCACCTGAAAGAAATGAGAACGATCGTGCAAGTTCTCCAAAGGTCGGAGGGGGAGATAAACGATCTAGTGGTGATCGTAGGCGCTTCCAATCAAACCCGGGAGTTCGGGGCGAAGACAGAACCACCAGAACCCTCGCAATCGTCCCCCTGCCTGTTTCATATGTAAGGGGCTGCACGTGGCGAGAGAATGTCCGAATCGGACCGCCTTCTATGCCTTTCAAGCTGCCTTAG
Coding sequence (CDS)
ATGCTCTACCTGTCGGAATTTCCAGACACCGTCTGCTTCTTGGAAGGTCAGATTGAAGAAGTTTTCGAGAAAGCTGACGCTATTGATGCAGTGACCGGTCGCCTCGATGGTTTACCTATAAAGGAGTTGTTAACAAGAGTTGACACTCTAAAGGCAAAGGCTACAAGAACTAGTAACTACGAGCGTGGGGACAATTCAACGGGCTCTATTGCCCACATAGAAGAATGGATTGGCGAGCTAGATTGCTCCCAAAAGTCGATTGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGTCGCTTTTGATGTCGTCGGGAATGGGATAGGAGACGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAATAGGGTGAAAATCCTCGAACCCAAACCCTTCTGTGGGGCAAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCAACGGAAGTTACGTGAACTAAAACACACCGGTAGCATTCGGGAGTATGTGAAGCAATTTGCGGGACTGATGTTAGACATACGCAATATGTCCGAGAAAGACAAAAAATTTTGTTTTGTCGAAGGCCTTAAATCGTGGGCGAAGACCAAACTGTATGAACAGGGGGTCCAAGAAATCTTGTCGGCATACGCAGCGGCAGAGCGACTGTTTGATCTGTCCCATGACTCTCAAGATGAGAGCCGTCATCCAAGTCCCTCACCTGAAAGAAATGAGAACGATCGTGCAAGTTCTCCAAAGGTCGGAGGGGGAGATAAACGATCTAGTGGTGATCGTAGGCGCTTCCAATCAAACCCGGGAGTTCGGGGCGAAGACAGAACCACCAGAACCCTCGCAATCGTCCCCCTGCCTGTTTCATATGTAAGGGGCTGCACGTGGCGAGAGAATGTCCGAATCGGACCGCCTTCTATGCCTTTCAAGCTGCCTTAG
Protein sequence
MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKATRTSNYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNLTMRAMANQAPTGGAIQVNRVKILEPKPFCGASLKKELRSQFFPENVEILAQRKLRELKHTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAERLFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTRTLAIVPLPVSYVRGCTWRENVRIGPPSMPFKLP
Homology
BLAST of PI0016209 vs. ExPASy TrEMBL
Match:
A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)
HSP 1 Score: 382.5 bits (981), Expect = 1.8e-102
Identity = 214/367 (58.31%), Postives = 250/367 (68.12%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+F+K + IDAVTGR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR+NL
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLNL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLAMMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 304
LFDLS+DSQD RHPS S + N+R SSPK GGD+R +GDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. ExPASy TrEMBL
Match:
A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)
HSP 1 Score: 380.6 bits (976), Expect = 6.8e-102
Identity = 215/374 (57.49%), Postives = 251/374 (67.11%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELVTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAPTGGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. ExPASy TrEMBL
Match:
A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)
HSP 1 Score: 380.2 bits (975), Expect = 8.9e-102
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQKGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR +QSN G +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSYQSNTGNSWRGSNNQ 381
BLAST of PI0016209 vs. ExPASy TrEMBL
Match:
A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)
HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. ExPASy TrEMBL
Match:
A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)
HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. NCBI nr
Match:
KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])
HSP 1 Score: 382.5 bits (981), Expect = 3.7e-102
Identity = 214/367 (58.31%), Postives = 250/367 (68.12%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+F+K + IDAVTGR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR+NL
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLNL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLAMMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 304
LFDLS+DSQD RHPS S + N+R SSPK GGD+R +GDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. NCBI nr
Match:
KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 380.6 bits (976), Expect = 1.4e-101
Identity = 215/374 (57.49%), Postives = 251/374 (67.11%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELVTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAPTGGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. NCBI nr
Match:
KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 380.2 bits (975), Expect = 1.8e-101
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQKGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR +QSN G +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSYQSNTGNSWRGSNNQ 381
BLAST of PI0016209 vs. NCBI nr
Match:
KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 379.0 bits (972), Expect = 4.1e-101
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
BLAST of PI0016209 vs. NCBI nr
Match:
KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 379.0 bits (972), Expect = 4.1e-101
Identity = 214/374 (57.22%), Postives = 250/374 (66.84%), Query Frame = 0
Query: 1 MLYLSEFPDTVCFLEGQIEEVFEKADAIDAVTGRLDGLPIKELLTRVDTLKAKAT--RTS 60
MLYL E PD++ +LE ++EE+ EK + IDAV GR++G PI+EL+TRVD L+ RT
Sbjct: 22 MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81
Query: 61 NYERGDNSTGSIAHIEEWIGELDCSQKSIVEMINGMSEDFRVAFDVVGNGIGDVSARVNL 120
NYERGD+STGS+AHIEE + ELD SQK+++EMINGMSEDFR DVV N I DV+AR++L
Sbjct: 82 NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141
Query: 121 TMRAMANQAPTGGAIQVNRVKILEPKPFCGA----------------------------- 180
TMRAMANQAP GGAI V+RVKI EPKPFCGA
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQYFRATNTVTEEAKV 201
Query: 181 ---------------------------------SLKKELRSQFFPENVEILAQRKLRELK 240
+LK+ELRSQFFPENVEILA+RKLRELK
Sbjct: 202 TLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELK 261
Query: 241 HTGSIREYVKQFAGLMLDIRNMSEKDKKFCFVEGLKSWAKTKLYEQGVQEILSAYAAAER 300
HTGSIREYVKQFAGLMLDIR+MSEKDK FCFVEGLK WAKTKLYEQ VQ++ SAYAAAER
Sbjct: 262 HTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAER 321
Query: 301 LFDLSHDSQDESRHPSPSPERNENDRASSPKVGGGDKRSSGDRRRFQSNPGVRGEDRTTR 311
LFDLS+DSQD RHPS S + N+R SSPK GGD+R SGDRR QSN G + +
Sbjct: 322 LFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ 381
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SKW3 | 1.8e-102 | 58.31 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7UIP7 | 6.8e-102 | 57.49 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
| A0A5A7SUK4 | 8.9e-102 | 57.22 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81... | [more] |
| A0A5D3C4R1 | 2.0e-101 | 57.22 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
| A0A5D3BRZ6 | 2.0e-101 | 57.22 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0031722.1 | 3.7e-102 | 58.31 | uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa] | [more] |
| KAA0053339.1 | 1.4e-101 | 57.49 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0032849.1 | 1.8e-101 | 57.22 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0037220.1 | 4.1e-101 | 57.22 | reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... | [more] |
| KAA0063412.1 | 4.1e-101 | 57.22 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
