Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGGCTTCATGGGCTTTTTGATTTTGTTACATCCGGCTGTAAATATTTAGCACTTTTGTTCTATATATGTAAATTAACCTTCTAATTTTGTTTTACAATTCAAAGAGATCGAACAACAGTGGACTTCGTGATGTTGCAGATGATCCACAACAGGTTCTTGATATATTCAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACATCCACAAGTTCATAGGGAACGTGCTCAAGTGGAAGAAGTTGAACTCGATGAGGTTTACCATAATGTGGAAGAAGTGCCTCCTATAACACAGATACAGAGCCAAACTAGTTAAAGTAGTCCGATCACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTCATGGGCCTGTATATGATATTTTGATTCAGGAGTTAGTCCATCTTCTTCGTACATGGATGTTGATCCATCAACTTCATACATGCATGGACACAGACGAGATCATGGAGAACATAACGAGTATCTATACTATGAAGCACCTGCAGAGGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGTTGAGCTAGAGCAACATAGAAGTCAAAGTTGA
mRNA sequence
ATGACCGGCTTCATGGGCTTTTTGATTTTGTTACATCCGGCTAGATCGAACAACAGTGGACTTCGTGATGTTGCAGATGATCCACAACAGGTTCTTGATATATTCAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACATCCACAAGTTCATAGGGAACGTGCTCAAGTGGAAGAAGTTGAACTCGATGAGGTTTACCATAATGTGGAAGAAGTGCCTCCTATAACACAGATACAGAGCCAAACTAGAGTTAGTCCATCTTCTTCGTACATGGATGTTGATCCATCAACTTCATACATGCATGGACACAGACGAGATCATGGAGAACATAACGAGTATCTATACTATGAAGCACCTGCAGAGGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGTTGAGCTAGAGCAACATAGAAGTCAAAGTTGA
Coding sequence (CDS)
ATGACCGGCTTCATGGGCTTTTTGATTTTGTTACATCCGGCTAGATCGAACAACAGTGGACTTCGTGATGTTGCAGATGATCCACAACAGGTTCTTGATATATTCAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTACATCCACAAGTTCATAGGGAACGTGCTCAAGTGGAAGAAGTTGAACTCGATGAGGTTTACCATAATGTGGAAGAAGTGCCTCCTATAACACAGATACAGAGCCAAACTAGAGTTAGTCCATCTTCTTCGTACATGGATGTTGATCCATCAACTTCATACATGCATGGACACAGACGAGATCATGGAGAACATAACGAGTATCTATACTATGAAGCACCTGCAGAGGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGTTGAGCTAGAGCAACATAGAAGTCAAAGTTGA
Protein sequence
MTGFMGFLILLHPARSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVYHNVEEVPPITQIQSQTRVSPSSSYMDVDPSTSYMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS
Homology
BLAST of PI0016191 vs. ExPASy TrEMBL
Match:
A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)
HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDVADDPQQVLDI NNNERYMEEIH +YD+PIV P +HR R +VEE ELDEVY
Sbjct: 33 RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVY 92
Query: 75 HNVEEVPPITQIQSQT--RVSPSSSYMDVDPSTSYMHGHRRDHGEHNEYLYYEAPAEVSD 134
H V+EV P+TQ QSQT V PSSSYMDVDPSTSYMHGH R + EHNEYLY+EAPA+VSD
Sbjct: 93 HKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSD 152
Query: 135 PQEYQQESENQVELEQHRSQS 154
QEYQQE ENQ + EQHR QS
Sbjct: 153 RQEYQQEPENQEDREQHRVQS 173
BLAST of PI0016191 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 110/175 (62.86%), Postives = 121/175 (69.14%), Query Frame = 0
Query: 7 FLILLHPARSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVE 66
++ L RSNN+ LRDVADD QQVLDI NNN+R+MEEIH MY +PIV PQ+HR R QVE
Sbjct: 28 YITQLGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVE 87
Query: 67 EVELDEVYHNVEEVPPITQIQSQT----------------------------RVSPSSSY 126
E ELDEVYHNVEE+ P TQ Q+QT V PSSSY
Sbjct: 88 EAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSY 147
Query: 127 MDVDPSTSYMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
MDV PSTSYMHGHR D+GEHNEYLY+EAP EVSD QEYQQE ENQ ELEQHR QS
Sbjct: 148 MDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQHRVQS 202
BLAST of PI0016191 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 109/172 (63.37%), Postives = 119/172 (69.19%), Query Frame = 0
Query: 10 LLHPARSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVE 69
LL+ RSNN+ LRDVADD QQ LDI NNNERYMEEIH MYD+PIV P VHR +VEE E
Sbjct: 22 LLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAE 81
Query: 70 LDEVYHNVEEVPPITQIQSQT----------------------------RVSPSSSYMDV 129
LD+VYHNVEEVP TQ QSQT V PSSSY+DV
Sbjct: 82 LDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDV 141
Query: 130 DPSTSYMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
PSTSYMHGHRR +GEHNEYLY+EAPA+VSD QEYQQE ENQ + EQHR QS
Sbjct: 142 SPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQS 193
BLAST of PI0016191 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 5.1e-44
Identity = 105/167 (62.87%), Postives = 117/167 (70.06%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDV +DPQQVLDI NNNERYME+IH +YD+PIV P VHRER +VEE ELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 75 HNVEEVPPITQIQSQTR----------------------------VSPSSSYMDVDPSTS 134
HNVEEVPP TQ QSQT V P SSYMDV PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 135 YMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
YM+GH R +GEHNEYLY+EAP +VSD QEYQQE +NQ + EQHR QS
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQS 483
BLAST of PI0016191 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 106/167 (63.47%), Postives = 115/167 (68.86%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDVADD QQ LDI NNNERYMEEIH MYD+PIV P VHR +VEE ELD+VY
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 75 HNVEEVPPITQIQSQT----------------------------RVSPSSSYMDVDPSTS 134
HNVEEVP TQ QSQT V PSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 135 YMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
YMHGH R +GEHNEYLY+EAPA+VSD QEYQQE ENQ + EQHR QS
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQS 205
BLAST of PI0016191 vs. NCBI nr
Match:
TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 201.4 bits (511), Expect = 5.4e-48
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDVADDPQQVLDI NNNERYMEEIH +YD+PIV P +HR R +VEE ELDEVY
Sbjct: 33 RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVY 92
Query: 75 HNVEEVPPITQIQSQT--RVSPSSSYMDVDPSTSYMHGHRRDHGEHNEYLYYEAPAEVSD 134
H V+EV P+TQ QSQT V PSSSYMDVDPSTSYMHGH R + EHNEYLY+EAPA+VSD
Sbjct: 93 HKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSD 152
Query: 135 PQEYQQESENQVELEQHRSQS 154
QEYQQE ENQ + EQHR QS
Sbjct: 153 RQEYQQEPENQEDREQHRVQS 173
BLAST of PI0016191 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 195.7 bits (496), Expect = 3.0e-46
Identity = 110/175 (62.86%), Postives = 121/175 (69.14%), Query Frame = 0
Query: 7 FLILLHPARSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVE 66
++ L RSNN+ LRDVADD QQVLDI NNN+R+MEEIH MY +PIV PQ+HR R QVE
Sbjct: 28 YITQLGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVE 87
Query: 67 EVELDEVYHNVEEVPPITQIQSQT----------------------------RVSPSSSY 126
E ELDEVYHNVEE+ P TQ Q+QT V PSSSY
Sbjct: 88 EAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSY 147
Query: 127 MDVDPSTSYMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
MDV PSTSYMHGHR D+GEHNEYLY+EAP EVSD QEYQQE ENQ ELEQHR QS
Sbjct: 148 MDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQHRVQS 202
BLAST of PI0016191 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 3.6e-44
Identity = 109/172 (63.37%), Postives = 119/172 (69.19%), Query Frame = 0
Query: 10 LLHPARSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVE 69
LL+ RSNN+ LRDVADD QQ LDI NNNERYMEEIH MYD+PIV P VHR +VEE E
Sbjct: 22 LLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAE 81
Query: 70 LDEVYHNVEEVPPITQIQSQT----------------------------RVSPSSSYMDV 129
LD+VYHNVEEVP TQ QSQT V PSSSY+DV
Sbjct: 82 LDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDV 141
Query: 130 DPSTSYMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
PSTSYMHGHRR +GEHNEYLY+EAPA+VSD QEYQQE ENQ + EQHR QS
Sbjct: 142 SPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQS 193
BLAST of PI0016191 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 105/167 (62.87%), Postives = 117/167 (70.06%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDV +DPQQVLDI NNNERYME+IH +YD+PIV P VHRER +VEE ELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 75 HNVEEVPPITQIQSQTR----------------------------VSPSSSYMDVDPSTS 134
HNVEEVPP TQ QSQT V P SSYMDV PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 135 YMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
YM+GH R +GEHNEYLY+EAP +VSD QEYQQE +NQ + EQHR QS
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQS 483
BLAST of PI0016191 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 185.3 bits (469), Expect = 4.0e-43
Identity = 106/167 (63.47%), Postives = 115/167 (68.86%), Query Frame = 0
Query: 15 RSNNSGLRDVADDPQQVLDIFNNNERYMEEIHYMYDVPIVHPQVHRERAQVEEVELDEVY 74
RSNN+ LRDVADD QQ LDI NNNERYMEEIH MYD+PIV P VHR +VEE ELD+VY
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 75 HNVEEVPPITQIQSQT----------------------------RVSPSSSYMDVDPSTS 134
HNVEEVP TQ QSQT V PSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 135 YMHGHRRDHGEHNEYLYYEAPAEVSDPQEYQQESENQVELEQHRSQS 154
YMHGH R +GEHNEYLY+EAPA+VSD QEYQQE ENQ + EQHR QS
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQS 205
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DFZ9 | 2.6e-48 | 75.89 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 1.4e-46 | 62.86 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 1.8e-44 | 63.37 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 5.1e-44 | 62.87 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 2.0e-43 | 63.47 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK22189.1 | 5.4e-48 | 75.89 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0025972.1 | 3.0e-46 | 62.86 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 3.6e-44 | 63.37 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 1.1e-43 | 62.87 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0062642.1 | 4.0e-43 | 63.47 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
