PI0016190 (gene) Melon (PI 482460) v1

Overview


Name	PI0016190
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr04: 17653159 .. 17653440 (+)
RNA-Seq Expression	PI0016190
Synteny	PI0016190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATACTATTGACTCACATATTGACATCAAAATGAGTGAAAGTGATAGGTCCGAGACAGCCATCCTTGAGAACATTGGTGAACAGGACAGTGTTGAAACTGGGGTCATTTCAGATAAAGAGGGCAGTGATGGTGCGGCTGAAGTCATTGCAAGAGTTATTGAGGATAACACTAGGGAGGATCGTTCAAAAAAAATCAGTGAGTATGATCCTTCTCTTGATCTGCCTATTGCACTGAGAAAGGGCACCAGATCCTGCACAAAGGCATTCGATTGTTAA

mRNA sequence

ATGACTGATACTATTGACTCACATATTGACATCAAAATGAGTGAAAGTGATAGGTCCGAGACAGCCATCCTTGAGAACATTGGTGAACAGGACAGTGTTGAAACTGGGGTCATTTCAGATAAAGAGGGCAGTGATGGTGCGGCTGAAGTCATTGCAAGAGTTATTGAGGATAACACTAGGGAGGATCGTTCAAAAAAAATCAGTGAGTATGATCCTTCTCTTGATCTGCCTATTGCACTGAGAAAGGGCACCAGATCCTGCACAAAGGCATTCGATTGTTAA

Coding sequence (CDS)

ATGACTGATACTATTGACTCACATATTGACATCAAAATGAGTGAAAGTGATAGGTCCGAGACAGCCATCCTTGAGAACATTGGTGAACAGGACAGTGTTGAAACTGGGGTCATTTCAGATAAAGAGGGCAGTGATGGTGCGGCTGAAGTCATTGCAAGAGTTATTGAGGATAACACTAGGGAGGATCGTTCAAAAAAAATCAGTGAGTATGATCCTTCTCTTGATCTGCCTATTGCACTGAGAAAGGGCACCAGATCCTGCACAAAGGCATTCGATTGTTAA

Protein sequence

MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTREDRSKKISEYDPSLDLPIALRKGTRSCTKAFDC

Homology

[Close]

BLAST of PI0016190 vs. ExPASy TrEMBL
Match: A0A5A7VI50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00820 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTDTIDSHID K SESDRSET   ENI    SV+TG + D+EGSDG  +VI +V E+N R
Sbjct: 228 MTDTIDSHIDSKQSESDRSETTFPENI---YSVDTGAVLDREGSDGGNKVIEKVTENNIR 287

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTK 90
           EDR + IS+YDP LD PIALRKGTR CT+
Sbjct: 288 EDRLENISKYDPFLDFPIALRKGTRFCTE 313

[Close]

BLAST of PI0016190 vs. ExPASy TrEMBL
Match: A0A5A7VI58 (tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G00780 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-20
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           +TDTIDSHID KMSESD+ ET I ENIGE  +V+TGV+S++EGSDG  EVIA+V E+N R
Sbjct: 427 LTDTIDSHIDNKMSESDKFETTIPENIGEHYNVDTGVLSNREGSDGGNEVIAKVTENNIR 486

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRS 87
           E+  + IS+YD SLDLPIA RK TR+
Sbjct: 487 ENHLENISKYDSSLDLPIAPRKSTRA 512

[Close]

BLAST of PI0016190 vs. ExPASy TrEMBL
Match: A0A5D3C7K7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00090 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTD+IDSHID KM+ESD+SET I ENI EQ +V T VI D +GS+   +V ARV+++  R
Sbjct: 103 MTDSIDSHIDSKMNESDKSETIIPENIDEQGNVNTEVILDGKGSNDENKVSARVMQNEIR 162

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTKAF 92
           EDRS+ +S+ DPSL LPIALRKGTR CTK F
Sbjct: 163 EDRSENLSQLDPSLYLPIALRKGTRFCTKHF 193

[Close]

BLAST of PI0016190 vs. ExPASy TrEMBL
Match: A0A5A7U7D6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00750 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTD+IDSHID KMSES++SET I ENI EQ +V T VI + +GS+   EV ARV+++  R
Sbjct: 78  MTDSIDSHIDSKMSESEKSETIIPENIDEQGNVNTEVILNGKGSNDENEVSARVMQNEIR 137

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTKAF 92
           EDRS+ +S+ DPSL LPIALRKGTR CTK F
Sbjct: 138 EDRSENLSQLDPSLYLPIALRKGTRFCTKHF 168

[Close]

BLAST of PI0016190 vs. ExPASy TrEMBL
Match: A0A5D3CAX0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00170 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 11  IKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTREDRSKKISEY 70
           IKMSESD+SET I        SV+T VISD +GSDG  EVIA+V E+ TREDRSK I++Y
Sbjct: 90  IKMSESDKSETTI-------HSVDTKVISDGKGSDGGNEVIAKVTENETREDRSKNINKY 149

Query: 71  DPSLDLPIALRKGTRSCTKAFD 93
           DP+LDL IALRKGTR+ T + D
Sbjct: 150 DPTLDLSIALRKGTRAFTTSLD 164

[Close]

BLAST of PI0016190 vs. NCBI nr
Match: KAA0065411.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTDTIDSHID K SESDRSET   ENI    SV+TG + D+EGSDG  +VI +V E+N R
Sbjct: 228 MTDTIDSHIDSKQSESDRSETTFPENI---YSVDTGAVLDREGSDGGNKVIEKVTENNIR 287

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTK 90
           EDR + IS+YDP LD PIALRKGTR CT+
Sbjct: 288 EDRLENISKYDPFLDFPIALRKGTRFCTE 313

[Close]

BLAST of PI0016190 vs. NCBI nr
Match: KAA0067418.1 (tRNA modification GTPase MnmE [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.5e-20
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           +TDTIDSHID KMSESD+ ET I ENIGE  +V+TGV+S++EGSDG  EVIA+V E+N R
Sbjct: 427 LTDTIDSHIDNKMSESDKFETTIPENIGEHYNVDTGVLSNREGSDGGNEVIAKVTENNIR 486

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRS 87
           E+  + IS+YD SLDLPIA RK TR+
Sbjct: 487 ENHLENISKYDSSLDLPIAPRKSTRA 512

[Close]

BLAST of PI0016190 vs. NCBI nr
Match: TYK06339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTD+IDSHID KM+ESD+SET I ENI EQ +V T VI D +GS+   +V ARV+++  R
Sbjct: 103 MTDSIDSHIDSKMNESDKSETIIPENIDEQGNVNTEVILDGKGSNDENKVSARVMQNEIR 162

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTKAF 92
           EDRS+ +S+ DPSL LPIALRKGTR CTK F
Sbjct: 163 EDRSENLSQLDPSLYLPIALRKGTRFCTKHF 193

[Close]

BLAST of PI0016190 vs. NCBI nr
Match: KAA0050086.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MTDTIDSHIDIKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTR 60
           MTD+IDSHID KMSES++SET I ENI EQ +V T VI + +GS+   EV ARV+++  R
Sbjct: 78  MTDSIDSHIDSKMSESEKSETIIPENIDEQGNVNTEVILNGKGSNDENEVSARVMQNEIR 137

Query: 61  EDRSKKISEYDPSLDLPIALRKGTRSCTKAF 92
           EDRS+ +S+ DPSL LPIALRKGTR CTK F
Sbjct: 138 EDRSENLSQLDPSLYLPIALRKGTRFCTKHF 168

[Close]

BLAST of PI0016190 vs. NCBI nr
Match: KAA0050862.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK08490.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-15
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 11  IKMSESDRSETAILENIGEQDSVETGVISDKEGSDGAAEVIARVIEDNTREDRSKKISEY 70
           IKMSESD+SET I        SV+T VISD +GSDG  EVIA+V E+ TREDRSK I++Y
Sbjct: 90  IKMSESDKSETTI-------HSVDTKVISDGKGSDGGNEVIAKVTENETREDRSKNINKY 149

Query: 71  DPSLDLPIALRKGTRSCTKAFD 93
           DP+LDL IALRKGTR+ T + D
Sbjct: 150 DPTLDLSIALRKGTRAFTTSLD 164

The following BLAST results are available for this feature:

BLAST of PI0016190 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VI50	1.1e-20	66.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VI58	3.1e-20	66.28	tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C7K7	5.4e-20	63.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A5A7U7D6	9.1e-20	63.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3CAX0	1.0e-15	63.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32...	[more]

BLAST of PI0016190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065411.1	2.2e-20	66.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067418.1	6.5e-20	66.28	tRNA modification GTPase MnmE [Cucumis melo var. makuwa]	[more]
TYK06339.1	1.1e-19	63.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0050086.1	1.9e-19	63.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0050862.1	2.2e-15	63.41	reverse transcriptase [Cucumis melo var. makuwa] >TYK08490.1 reverse transcripta...	[more]

BLAST of PI0016190 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016190.1	PI0016190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups