PI0016148 (gene) Melon (PI 482460) v1

Overview


Name	PI0016148
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr11: 14604691 .. 14604960 (+)
RNA-Seq Expression	PI0016148
Synteny	PI0016148

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACATTTGGCCCAGGGTATTATGGTTCAAGGGCCTATATAGGATATTTTGATTCAGGAGTCAATCCATCTTCTTCGTATATGGATGTCAGTCTATCAACTTCATACATGCATGGACACAGACGGAGTCGTGGAGAACAGAACGAATATCTATACTATGAAGCACCTGTAGAGGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGATGAGCCCGAGCAACATAGAGTTCAAAGTCGACAACGACAACCAGTTTGA

mRNA sequence

ATGCCAACATTTGGCCCAGGGTATTATGGTTCAAGGGCCTATATAGGATATTTTGATTCAGGAGTCAATCCATCTTCTTCGTATATGGATGTCAGTCTATCAACTTCATACATGCATGGACACAGACGGAGTCGTGGAGAACAGAACGAATATCTATACTATGAAGCACCTGTAGAGGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGATGAGCCCGAGCAACATAGAGTTCAAAGTCGACAACGACAACCAGTTTGA

Coding sequence (CDS)

ATGCCAACATTTGGCCCAGGGTATTATGGTTCAAGGGCCTATATAGGATATTTTGATTCAGGAGTCAATCCATCTTCTTCGTATATGGATGTCAGTCTATCAACTTCATACATGCATGGACACAGACGGAGTCGTGGAGAACAGAACGAATATCTATACTATGAAGCACCTGTAGAGGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGATGAGCCCGAGCAACATAGAGTTCAAAGTCGACAACGACAACCAGTTTGA

Protein sequence

MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEVSDPQEYQQEPENQDEPEQHRVQSRQRQPV

Homology

[Close]

BLAST of PI0016148 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.0e-25
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTF  GY      IGY+D+GV PSSSY+DVS STSYMHGHRR  GE NEYLY+EAP +V
Sbjct: 111 MPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADV 170

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 171 SDRQEYQQEPENQEDREQHRVQSRRRQP 198

[Close]

BLAST of PI0016148 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.5e-24
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTF  GY      IGY+D+GV PSSSY+DVS STSYMHGH R  GE NEYLY+EAP +V
Sbjct: 123 MPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADV 182

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 183 SDRQEYQQEPENQEDREQHRVQSRRRQP 210

[Close]

BLAST of PI0016148 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTFG GY  S    GY+D+G+ P SSYMDV  S SYMHGH R  GE NEYLY+EAP +V
Sbjct: 52  MPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADV 111

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 112 SDRQEYQQEPENQEDREQHRVQSRRRQP 139

[Close]

BLAST of PI0016148 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTFG GY  S+   GY+D+GV PSSSYMDV  STSYMHGH R  G+ NEYLY+EAP +V
Sbjct: 58  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 117

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQ R RQP
Sbjct: 118 SDRQEYQQEPENQEDREQHRVQDRCRQP 145

[Close]

BLAST of PI0016148 vs. ExPASy TrEMBL
Match: A0A5A7U3Y0 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00710 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
          MPTFG GY  S+   GY+D+GV PSSSYMDV  STSYMHGH R  G+ NEYLY+EAP +V
Sbjct: 4  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 63

Query: 61 SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
          SD QEYQQEPENQ++ EQHRVQ R RQP
Sbjct: 64 SDRQEYQQEPENQEDREQHRVQDRCRQP 91

[Close]

BLAST of PI0016148 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTF  GY      IGY+D+GV PSSSY+DVS STSYMHGHRR  GE NEYLY+EAP +V
Sbjct: 111 MPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADV 170

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 171 SDRQEYQQEPENQEDREQHRVQSRRRQP 198

[Close]

BLAST of PI0016148 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTF  GY      IGY+D+GV PSSSY+DVS STSYMHGH R  GE NEYLY+EAP +V
Sbjct: 123 MPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADV 182

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 183 SDRQEYQQEPENQEDREQHRVQSRRRQP 210

[Close]

BLAST of PI0016148 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTFG GY  S    GY+D+G+ P SSYMDV  S SYMHGH R  GE NEYLY+EAP +V
Sbjct: 52  MPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADV 111

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQSR+RQP
Sbjct: 112 SDRQEYQQEPENQEDREQHRVQSRRRQP 139

[Close]

BLAST of PI0016148 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
           MPTFG GY  S+   GY+D+GV PSSSYMDV  STSYMHGH R  G+ NEYLY+EAP +V
Sbjct: 58  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 117

Query: 61  SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
           SD QEYQQEPENQ++ EQHRVQ R RQP
Sbjct: 118 SDRQEYQQEPENQEDREQHRVQDRCRQP 145

[Close]

BLAST of PI0016148 vs. NCBI nr
Match: KAA0048355.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MPTFGPGYYGSRAYIGYFDSGVNPSSSYMDVSLSTSYMHGHRRSRGEQNEYLYYEAPVEV 60
          MPTFG GY  S+   GY+D+GV PSSSYMDV  STSYMHGH R  G+ NEYLY+EAP +V
Sbjct: 4  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 63

Query: 61 SDPQEYQQEPENQDEPEQHRVQSRQRQP 89
          SD QEYQQEPENQ++ EQHRVQ R RQP
Sbjct: 64 SDRQEYQQEPENQEDREQHRVQDRCRQP 91

The following BLAST results are available for this feature:

BLAST of PI0016148 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016148 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSG8	9.0e-25	72.73	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	4.5e-24	71.59	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CXX3	1.0e-23	69.32	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BMS3	1.0e-23	70.45	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7U3Y0	1.0e-23	70.45	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0016148 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01176.1	1.9e-24	72.73	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	9.3e-24	71.59	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0049532.1	2.1e-23	69.32	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01111.1	2.1e-23	70.45	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0048355.1	2.1e-23	70.45	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0016148 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016148.1	PI0016148.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance