PI0015644 (gene) Melon (PI 482460) v1

Overview


Name	PI0015644
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA-binding protein 28
Location	chr01: 5895070 .. 5896175 (-)
RNA-Seq Expression	PI0015644
Synteny	PI0015644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAAAAGAACTTCACAAACTTTGCATTGAAGCTGTTACCTCTCGAGCTACAAAGCAAAAACCCTTGATTCGCCAGGTTTGGCCTTTTCAGAAATGAAGGAAATCTGTTAGATGCTACTGTATTTTCCCCCCTTAACCTTAATTCAAATCTTATTTTGCAGATTAAATTCTTAAAGGATGTTAAGAAAGGAAAGATGCTGACAAAAAATCACTCATGTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATGAGCATGCCCTTGTAGCCTTGCGAGTTCTCAACAACAATCCAGGTAGTAAATTTTCTCATTTGATAATTCTTAATTCTTGACACGCCTGATGAGGCAACCATTATGAACATTGGTACTACCTTCTAGTTTTACTAGGAGCAGAAACATAGTTTGTCCCTTATCCTATTCTAAACGAGTCTCTGGTTTCTTGTAGAAACTTTTGGGCCTATAAATCGCCCAATTGTGGAGTTTGCTATTGACAACGTTCAAACGTTGAAGCTGCGAAAAGCCAAGTTACAAGCTTGGTCGCACGACAATAATACTGCCAATGTTCCCAAAGCAAGGCAGCAAAACGATGATTCTGATACAAATACTAGGGATATCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATAGGCGATAATCGTCCGGTGAAGGCACAGAATCATAACGAAGATGAAAATGACAATCATGTATCTAATGATGTGATGCAAGAAAGTAGAGCTAAAAAAAAGAGGAAAACACGTCCAGATATTGGTAATACAAACGAATCGCAGAAACAAAAACCAGAAGGACGAAGTTCGATGCCTGAAAAATCAAGCAAGAGATCGGCATCCATGGATTCTGAAAAAATAGAAGTTTCCCAGCAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGCAGAAGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGACGGGATATTGTAGATAAACTCGACGTGCTTATCGAACAATATCAGTCCAAGTTTTTGAAGCAAAGGTCAGACCGAGCAGATAGTGAAAAGAAAGGGTCTAAACAGGTTAGAAGATGGTTCCAATCATAA

mRNA sequence

ATGAAAGAAAAAGAACTTCACAAACTTTGCATTGAAGCTGTTACCTCTCGAGCTACAAAGCAAAAACCCTTGATTCGCCAGATTAAATTCTTAAAGGATGTTAAGAAAGGAAAGATGCTGACAAAAAATCACTCATGTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATGAGCATGCCCTTGTAGCCTTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGGCCTATAAATCGCCCAATTGTGGAGTTTGCTATTGACAACGTTCAAACGTTGAAGCTGCGAAAAGCCAAGTTACAAGCTTGGTCGCACGACAATAATACTGCCAATGTTCCCAAAGCAAGGCAGCAAAACGATGATTCTGATACAAATACTAGGGATATCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATAGGCGATAATCGTCCGGTGAAGGCACAGAATCATAACGAAGATGAAAATGACAATCATGTATCTAATGATGTGATGCAAGAAAGTAGAGCTAAAAAAAAGAGGAAAACACGTCCAGATATTGGTAATACAAACGAATCGCAGAAACAAAAACCAGAAGGACGAAGTTCGATGCCTGAAAAATCAAGCAAGAGATCGGCATCCATGGATTCTGAAAAAATAGAAGTTTCCCAGCAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGCAGAAGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGACGGGATATTGTAGATAAACTCGACGTGCTTATCGAACAATATCAGTCCAAGTTTTTGAAGCAAAGGTCAGACCGAGCAGATAGTGAAAAGAAAGGGTCTAAACAGGTTAGAAGATGGTTCCAATCATAA

Coding sequence (CDS)

ATGAAAGAAAAAGAACTTCACAAACTTTGCATTGAAGCTGTTACCTCTCGAGCTACAAAGCAAAAACCCTTGATTCGCCAGATTAAATTCTTAAAGGATGTTAAGAAAGGAAAGATGCTGACAAAAAATCACTCATGTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATGAGCATGCCCTTGTAGCCTTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGGCCTATAAATCGCCCAATTGTGGAGTTTGCTATTGACAACGTTCAAACGTTGAAGCTGCGAAAAGCCAAGTTACAAGCTTGGTCGCACGACAATAATACTGCCAATGTTCCCAAAGCAAGGCAGCAAAACGATGATTCTGATACAAATACTAGGGATATCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATAGGCGATAATCGTCCGGTGAAGGCACAGAATCATAACGAAGATGAAAATGACAATCATGTATCTAATGATGTGATGCAAGAAAGTAGAGCTAAAAAAAAGAGGAAAACACGTCCAGATATTGGTAATACAAACGAATCGCAGAAACAAAAACCAGAAGGACGAAGTTCGATGCCTGAAAAATCAAGCAAGAGATCGGCATCCATGGATTCTGAAAAAATAGAAGTTTCCCAGCAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGCAGAAGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGACGGGATATTGTAGATAAACTCGACGTGCTTATCGAACAATATCAGTCCAAGTTTTTGAAGCAAAGGTCAGACCGAGCAGATAGTGAAAAGAAAGGGTCTAAACAGGTTAGAAGATGGTTCCAATCATAA

Protein sequence

MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDSDTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDIGNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPKKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS

Homology

[Close]

BLAST of PI0015644 vs. ExPASy Swiss-Prot
Match: Q9NW13 (RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-09
Identity = 78/301 (25.91%), Postives = 139/301 (46.18%), Query Frame = 0


Query: 3   EKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHALVA 62
           +K+L KL + A +    ++   I++ + ++D+K      K  S G AF EF EHEHAL A
Sbjct: 500 DKQLRKLLLSATSG---EKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKA 559

Query: 63  LRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDSDT 122
           LR++NNNPE FGP+ RPIVEF++++ + LK+++ ++Q         ++ K R +    + 
Sbjct: 560 LRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQ--------RSLQKMRSKPATGEP 619

Query: 123 NTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDIGN 182
                   K+  +K           AQ+H E            ++S+   ++K +    +
Sbjct: 620 QKGQPEPAKDQQQK----------AAQHHTE------------EQSKVPPEQKRKAGSTS 679

Query: 183 TNESQKQKPEGRSSMPEKSSKRSA----SMDSEKIEVSQQADVQ--HKKKVKHQVEQQQK 242
               Q +    +  +P+   +R      S    KI +  +  V+  H KK K Q+ Q ++
Sbjct: 680 WTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQINQWKQ 739

Query: 243 KRPKKNKEPI------GRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRR--WFQ 290
           ++ + + E +      G     + + L+EQY+ K L           KG+   +R  WF 
Sbjct: 740 EKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLL--------GPSKGAPLAKRSKWFD 759

[Close]

BLAST of PI0015644 vs. ExPASy Swiss-Prot
Match: Q8CGC6 (RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 81/295 (27.46%), Postives = 137/295 (46.44%), Query Frame = 0


Query: 3   EKELHKLCIEAVTSRATKQKPLIRQIKFLKDVK--KGKMLTKNHSCGVAFVEFSEHEHAL 62
           +K+L KL +EA      ++   I++ + ++D+K   GKM  K  S G AF EF +HEHAL
Sbjct: 490 DKQLRKLLLEATRG---EKGVRIKECRVMRDLKGVHGKM--KGQSLGYAFAEFQKHEHAL 549

Query: 63  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANV---PKARQQN 122
            ALR  NNNPE FG   RPIVEF++++ + LK+++ ++Q       +  V   P+  Q+ 
Sbjct: 550 RALRHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKELRIQRSLQKMESKPVTSKPQKEQKE 609

Query: 123 DDSDTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTR 182
              D   + + S   +  + KA G+ +  KA + +          + ++    KK+RK  
Sbjct: 610 VGKDKQQKVVQSATQD--QSKAPGEQKG-KAGSTSWSGFQTKAEVEQVELPDGKKRRKVL 669

Query: 183 PDIGNTNESQKQKPEGR-SSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQK 242
               +     + + +G+  S+P +  K             Q    + KK+      Q  K
Sbjct: 670 ALPSHRGPKIRLRDKGKVKSLPSRKPK------------PQMGQRKQKKQQLASSVQAPK 729

Query: 243 KRPKKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRR--WFQS 290
           ++ K+NK         + + L+EQY+ K L           KG+  ++R  WF S
Sbjct: 730 RKAKENKAEA------RFNQLVEQYKQKLL--------GPSKGAPLMKRSKWFDS 750

[Close]

BLAST of PI0015644 vs. ExPASy TrEMBL
Match: A0A5A7STH1 (RNA-binding protein 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00590 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.4e-135
Identity = 264/289 (91.35%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL
Sbjct: 1   MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DN+TANVPKAR +ND S
Sbjct: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGS 120

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DT  RD+HSNKNNSRKRKAIGDN  VKAQNH EDENDNHVSNDVMQESRA+KKRKTRPDI
Sbjct: 121 DTKARDVHSNKNNSRKRKAIGDNHLVKAQNHIEDENDNHVSNDVMQESRARKKRKTRPDI 180

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPK 240
           GNTNESQKQKPEGR  MP+KSSKR ASMDSEKIEVSQ+AD Q KKKVKHQ+EQQQ+KRP 
Sbjct: 181 GNTNESQKQKPEGRRLMPQKSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPM 240

Query: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR DSEKKGSKQVRRWFQS
Sbjct: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 289

[Close]

BLAST of PI0015644 vs. ExPASy TrEMBL
Match: A0A1S3BIA6 (RNA-binding protein 28 OS=Cucumis melo OX=3656 GN=LOC103490362 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 1.0e-133
Identity = 262/289 (90.66%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL
Sbjct: 679 MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 738

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DN+TANVPKAR +ND S
Sbjct: 739 VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGS 798

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DT  RD+HSNKNNSRKRKAI DN  VKAQNH EDENDNHVSNDVMQESRA+KKRKTRPDI
Sbjct: 799 DTKARDVHSNKNNSRKRKAIDDNHLVKAQNHIEDENDNHVSNDVMQESRARKKRKTRPDI 858

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPK 240
           GNTNESQKQKPEGR  +P+KSSKR ASMDSEKIEVSQ+AD Q KKKVKHQ+EQQQ+KRP 
Sbjct: 859 GNTNESQKQKPEGRRLIPQKSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPM 918

Query: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR DSEKKGSKQVRRWFQS
Sbjct: 919 KNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 967

[Close]

BLAST of PI0015644 vs. ExPASy TrEMBL
Match: A0A0A0K5P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004090 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 8.6e-133
Identity = 262/290 (90.34%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 1    MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
            MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAF+EFSEHEHAL
Sbjct: 777  MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFIEFSEHEHAL 836

Query: 61   VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
            VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DNN AN+PKARQ+ DDS
Sbjct: 837  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNNIANIPKARQRKDDS 896

Query: 121  DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
            DTN RDIHSN+NNSRKRKAIG+N  VKAQN NEDENDNHVSN+VMQ++R +KKRKTRPD 
Sbjct: 897  DTNARDIHSNENNSRKRKAIGNNHLVKAQNRNEDENDNHVSNNVMQDNRDRKKRKTRPDF 956

Query: 181  GNTNESQKQKPEGRSSMPEKSSKRSASMDSE-KIEVSQQADVQHKKKVKHQVEQQQKKRP 240
            GNTNESQKQKP GRSSMPEKSSKR ASMDSE KIEVSQ+ADVQHKKKVKHQVEQQQ+KRP
Sbjct: 957  GNTNESQKQKP-GRSSMPEKSSKRPASMDSEKKIEVSQEADVQHKKKVKHQVEQQQRKRP 1016

Query: 241  KKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
            KKNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR D EKKG+KQVRRWFQS
Sbjct: 1017 KKNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDGEKKGTKQVRRWFQS 1065

[Close]

BLAST of PI0015644 vs. ExPASy TrEMBL
Match: A0A6J1IDH9 (RNA-binding protein 28 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.9e-111
Identity = 230/290 (79.31%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKEL KLCIEAVTSRATKQKP+IRQIKFLKDVKKGK+LTKN+SCGVAFVEFSEH+HAL
Sbjct: 698 MKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHAL 757

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGP+NRPIVEFA+DNVQ LKLRKAKLQA S+ +NTANVPKA  +N  +
Sbjct: 758 VALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQA-SYQDNTANVPKALHRN--A 817

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDV-MQESRAKKKRKTRPD 180
           DTN  DIHSNK NSRKRKA GDNRPVK +N NE++N +HVSND+ M+ESRA+KKRKTRP+
Sbjct: 818 DTNAGDIHSNKTNSRKRKATGDNRPVKEKNRNENKNGDHVSNDMAMEESRARKKRKTRPE 877

Query: 181 IGNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRP 240
            GN NESQKQKPEGR SMPEK SKRSA MD+ K + SQ+ADVQHKKK KHQVEQQQ+KR 
Sbjct: 878 SGNINESQKQKPEGRRSMPEKLSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQQQRKRA 937

Query: 241 KKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KKNK P+G+D VDKLD LIEQY+SKF ++ SD AD EKKGSKQVRRWFQS
Sbjct: 938 KKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDPADGEKKGSKQVRRWFQS 984

[Close]

BLAST of PI0015644 vs. ExPASy TrEMBL
Match: A0A6J1IG31 (RNA-binding protein 28 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 4.6e-110
Identity = 230/291 (79.04%), Postives = 257/291 (88.32%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKEL KLCIEAVTSRATKQKP+IRQIKFLKDVKKGK+LTKN+SCGVAFVEFSEH+HAL
Sbjct: 698 MKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHAL 757

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGP+NRPIVEFA+DNVQ LKLRKAKLQA S+ +NTANVPKA  +N  +
Sbjct: 758 VALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQA-SYQDNTANVPKALHRN--A 817

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDV-MQESRAKKKRKTRPD 180
           DTN  DIHSNK NSRKRKA GDNRPVK +N NE++N +HVSND+ M+ESRA+KKRKTRP+
Sbjct: 818 DTNAGDIHSNKTNSRKRKATGDNRPVKEKNRNENKNGDHVSNDMAMEESRARKKRKTRPE 877

Query: 181 IGNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVE-QQQKKR 240
            GN NESQKQKPEGR SMPEK SKRSA MD+ K + SQ+ADVQHKKK KHQVE QQQ+KR
Sbjct: 878 SGNINESQKQKPEGRRSMPEKLSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQQQQRKR 937

Query: 241 PKKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
            KKNK P+G+D VDKLD LIEQY+SKF ++ SD AD EKKGSKQVRRWFQS
Sbjct: 938 AKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDPADGEKKGSKQVRRWFQS 985

[Close]

BLAST of PI0015644 vs. NCBI nr
Match: KAA0033793.1 (RNA-binding protein 28 [Cucumis melo var. makuwa] >TYK22341.1 RNA-binding protein 28 [Cucumis melo var. makuwa])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 264/289 (91.35%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL
Sbjct: 1   MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DN+TANVPKAR +ND S
Sbjct: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGS 120

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DT  RD+HSNKNNSRKRKAIGDN  VKAQNH EDENDNHVSNDVMQESRA+KKRKTRPDI
Sbjct: 121 DTKARDVHSNKNNSRKRKAIGDNHLVKAQNHIEDENDNHVSNDVMQESRARKKRKTRPDI 180

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPK 240
           GNTNESQKQKPEGR  MP+KSSKR ASMDSEKIEVSQ+AD Q KKKVKHQ+EQQQ+KRP 
Sbjct: 181 GNTNESQKQKPEGRRLMPQKSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPM 240

Query: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR DSEKKGSKQVRRWFQS
Sbjct: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 289

[Close]

BLAST of PI0015644 vs. NCBI nr
Match: XP_008448076.1 (PREDICTED: RNA-binding protein 28 [Cucumis melo])

HSP 1 Score: 486.1 bits (1250), Expect = 2.1e-133
Identity = 262/289 (90.66%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL
Sbjct: 679 MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 738

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DN+TANVPKAR +ND S
Sbjct: 739 VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGS 798

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DT  RD+HSNKNNSRKRKAI DN  VKAQNH EDENDNHVSNDVMQESRA+KKRKTRPDI
Sbjct: 799 DTKARDVHSNKNNSRKRKAIDDNHLVKAQNHIEDENDNHVSNDVMQESRARKKRKTRPDI 858

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPK 240
           GNTNESQKQKPEGR  +P+KSSKR ASMDSEKIEVSQ+AD Q KKKVKHQ+EQQQ+KRP 
Sbjct: 859 GNTNESQKQKPEGRRLIPQKSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPM 918

Query: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR DSEKKGSKQVRRWFQS
Sbjct: 919 KNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 967

[Close]

BLAST of PI0015644 vs. NCBI nr
Match: XP_004148553.1 (RNA-binding protein 28 [Cucumis sativus] >KGN43176.2 hypothetical protein Csa_020310 [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 1.8e-132
Identity = 262/290 (90.34%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKELHKLCIEAVTSRATKQKP+IRQIKFLKDVKKGKMLTKNHSCGVAF+EFSEHEHAL
Sbjct: 678 MKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFIEFSEHEHAL 737

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWS DNN AN+PKARQ+ DDS
Sbjct: 738 VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNNIANIPKARQRKDDS 797

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DTN RDIHSN+NNSRKRKAIG+N  VKAQN NEDENDNHVSN+VMQ++R +KKRKTRPD 
Sbjct: 798 DTNARDIHSNENNSRKRKAIGNNHLVKAQNRNEDENDNHVSNNVMQDNRDRKKRKTRPDF 857

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSE-KIEVSQQADVQHKKKVKHQVEQQQKKRP 240
           GNTNESQKQKP GRSSMPEKSSKR ASMDSE KIEVSQ+ADVQHKKKVKHQVEQQQ+KRP
Sbjct: 858 GNTNESQKQKP-GRSSMPEKSSKRPASMDSEKKIEVSQEADVQHKKKVKHQVEQQQRKRP 917

Query: 241 KKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KKNKEPIGRDIVDKLDVLIEQYQSKFL+QRSDR D EKKG+KQVRRWFQS
Sbjct: 918 KKNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDGEKKGTKQVRRWFQS 966

[Close]

BLAST of PI0015644 vs. NCBI nr
Match: XP_038888249.1 (RNA-binding protein 28 [Benincasa hispida])

HSP 1 Score: 446.4 bits (1147), Expect = 1.8e-121
Identity = 246/289 (85.12%), Postives = 266/289 (92.04%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKEL KLCIEAVTSRATKQKP+IRQIKFLKDVKKGK+LTKNHSCGVAFVEFSEHEHAL
Sbjct: 677 MKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKILTKNHSCGVAFVEFSEHEHAL 736

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGP NRPIVEFAIDN+QTLKLRKAKLQAWS D NTANVPKA+Q N ++
Sbjct: 737 VALRVLNNNPETFGPKNRPIVEFAIDNIQTLKLRKAKLQAWSQD-NTANVPKAQQWNVNT 796

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDVMQESRAKKKRKTRPDI 180
           DTN  DIHSN+ NSRKRKAIGDNRPVKAQNHN+D+NDNHVSNDVM ESRA+KKRKTRP+I
Sbjct: 797 DTNAGDIHSNQKNSRKRKAIGDNRPVKAQNHNKDDNDNHVSNDVMVESRARKKRKTRPEI 856

Query: 181 GNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRPK 240
           GNTNES KQKP G+  MPEKSSKR ASMD  KI+ SQ++DVQH KKVKH+V +QQ+KRPK
Sbjct: 857 GNTNESLKQKP-GQKLMPEKSSKRPASMDPGKIKASQESDVQHIKKVKHEV-KQQRKRPK 916

Query: 241 KNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KNKEPIGRD+VDKLDVLIEQYQSKF +QRSDR D EKKGSKQVRRWFQS
Sbjct: 917 KNKEPIGRDVVDKLDVLIEQYQSKFSQQRSDRTDGEKKGSKQVRRWFQS 962

[Close]

BLAST of PI0015644 vs. NCBI nr
Match: XP_022975201.1 (RNA-binding protein 28 isoform X2 [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-111
Identity = 230/290 (79.31%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
           MKEKEL KLCIEAVTSRATKQKP+IRQIKFLKDVKKGK+LTKN+SCGVAFVEFSEH+HAL
Sbjct: 698 MKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHAL 757

Query: 61  VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
           VALRVLNNNPETFGP+NRPIVEFA+DNVQ LKLRKAKLQA S+ +NTANVPKA  +N  +
Sbjct: 758 VALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQA-SYQDNTANVPKALHRN--A 817

Query: 121 DTNTRDIHSNKNNSRKRKAIGDNRPVKAQNHNEDENDNHVSNDV-MQESRAKKKRKTRPD 180
           DTN  DIHSNK NSRKRKA GDNRPVK +N NE++N +HVSND+ M+ESRA+KKRKTRP+
Sbjct: 818 DTNAGDIHSNKTNSRKRKATGDNRPVKEKNRNENKNGDHVSNDMAMEESRARKKRKTRPE 877

Query: 181 IGNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQQQKKRP 240
            GN NESQKQKPEGR SMPEK SKRSA MD+ K + SQ+ADVQHKKK KHQVEQQQ+KR 
Sbjct: 878 SGNINESQKQKPEGRRSMPEKLSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQQQRKRA 937

Query: 241 KKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
           KKNK P+G+D VDKLD LIEQY+SKF ++ SD AD EKKGSKQVRRWFQS
Sbjct: 938 KKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDPADGEKKGSKQVRRWFQS 984

[Close]

BLAST of PI0015644 vs. TAIR 10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-41
Identity = 120/296 (40.54%), Postives = 180/296 (60.81%), Query Frame = 0


Query: 1    MKEKELHKLCIEAVTSRATKQKPLIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHAL 60
            M  K+L++L ++AVTSRATKQKP IRQIKFL++ KKGK+ TKN+S GVAFVEF+EHEHAL
Sbjct: 724  MNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSRGVAFVEFTEHEHAL 783

Query: 61   VALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSHDNNTANVPKARQQNDDS 120
            VALRVLNNNPETFGP +RP++EFA+DNVQ LK+R+AK Q +          + +    D 
Sbjct: 784  VALRVLNNNPETFGPQHRPVIEFAVDNVQKLKIREAKQQQFQQ--------REKHNESDQ 843

Query: 121  DTNTRDIHSNKNNSRKRKAIGDNRPVKAQN-------HNEDENDNHVSNDVMQESRAKKK 180
                 +  +  N  +++   GDN   + +N         E+  +   SN  ++++ A+KK
Sbjct: 844  QQANGEAQAPDNKYKRKTREGDNTGPRKENAARFKKGPREESKEEAKSNIAVKDNAAEKK 903

Query: 181  RKTRPDIGNTNESQKQKPEGRSSMPEKSSKRSASMDSEKIEVSQQADVQHKKKVKHQVEQ 240
            R  R     T E      +G+    ++++++     S+  ++S+    +  +    +   
Sbjct: 904  RPIR-----TQEKPSSNKKGQLMRQKETTEKPDPKISK--DLSEPRKRKFGEDRGEENRN 963

Query: 241  QQKKRPKKNKEPIGRDIVDKLDVLIEQYQSKFLKQRSDRADSEKKGSKQVRRWFQS 290
             Q+KR K+ +   G ++VDKLD+LIE+Y+SKF  Q S +   +K+ S QVRRWF+S
Sbjct: 964  GQRKRKKQGQGQGGAEVVDKLDLLIEKYRSKF-SQSSAKTGPQKQSSGQVRRWFES 1003

The following BLAST results are available for this feature:

BLAST of PI0015644 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NW13	3.4e-09	25.91	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3	[more]
Q8CGC6	1.3e-05	27.46	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4	[more]

BLAST of PI0015644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STH1	5.4e-135	91.35	RNA-binding protein 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BIA6	1.0e-133	90.66	RNA-binding protein 28 OS=Cucumis melo OX=3656 GN=LOC103490362 PE=4 SV=1	[more]
A0A0A0K5P3	8.6e-133	90.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004090 PE=4 SV=1	[more]
A0A6J1IDH9	1.9e-111	79.31	RNA-binding protein 28 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE...	[more]
A0A6J1IG31	4.6e-110	79.04	RNA-binding protein 28 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE...	[more]

BLAST of PI0015644 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033793.1	1.1e-134	91.35	RNA-binding protein 28 [Cucumis melo var. makuwa] >TYK22341.1 RNA-binding protei...	[more]
XP_008448076.1	2.1e-133	90.66	PREDICTED: RNA-binding protein 28 [Cucumis melo]	[more]
XP_004148553.1	1.8e-132	90.34	RNA-binding protein 28 [Cucumis sativus] >KGN43176.2 hypothetical protein Csa_02...	[more]
XP_038888249.1	1.8e-121	85.12	RNA-binding protein 28 [Benincasa hispida]	[more]
XP_022975201.1	3.8e-111	79.31	RNA-binding protein 28 isoform X2 [Cucurbita maxima]	[more]

BLAST of PI0015644 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21440.1	1.5e-41	40.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..84 e-value: 1.0E-9 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..283
None	No IPR available	PANTHER	PTHR48039:SF2	RNA-BINDING PROTEIN 28	coord: 2..173
None	No IPR available	PANTHER	PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	coord: 2..173
None	No IPR available	CDD	cd12416	RRM4_RBM28_like	coord: 1..87 e-value: 5.28289E-35 score: 120.016
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 24..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015644.1	PI0015644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding